BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645189|ref|NP_207359.1| hypothetical protein
[Helicobacter pylori 26695]
         (56 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207359.1|  (NC_000915) hypothetical protein [Helicoba...   113  4e-25
pir||D64590  hypothetical protein HP0564 - Helicobacter pylo...   112  1e-24
ref|NP_223229.1|  (NC_000921) putative [Helicobacter pylori ...   110  4e-24

>ref|NP_207359.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 gb|AAD07634.1| (AE000570) H. pylori predicted coding region HP0564 [Helicobacter
          pylori 26695]
          Length = 56

 Score =  113 bits (283), Expect = 4e-25
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MTFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL 56
          MTFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL
Sbjct: 1  MTFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL 56



>pir||D64590 hypothetical protein HP0564 - Helicobacter pylori (strain 26695)
          Length = 78

 Score =  112 bits (279), Expect = 1e-24
 Identities = 55/56 (98%), Positives = 56/56 (99%)

Query: 1  MTFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL 56
          +TFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL
Sbjct: 23 VTFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL 78



>ref|NP_223229.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71923 hypothetical protein jhp0511 - Helicobacter pylori (strain J99)
 gb|AAD06087.1| (AE001484) putative [Helicobacter pylori J99]
          Length = 81

 Score =  110 bits (275), Expect = 4e-24
 Identities = 54/56 (96%), Positives = 56/56 (99%)

Query: 1  MTFYLSKDEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL 56
          +TFYLSK+EHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL
Sbjct: 26 VTFYLSKEEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL 81



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.316    0.131    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,155,383
Number of Sequences: 1026957
Number of extensions: 842892
Number of successful extensions: 2675
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2672
Number of HSP's gapped (non-prelim): 3
length of query: 56
length of database: 324,149,939
effective HSP length: 32
effective length of query: 24
effective length of database: 291,287,315
effective search space: 6990895560
effective search space used: 6990895560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 91 (39.7 bits)