BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644688|ref|NP_206858.1| hypothetical protein
[Helicobacter pylori 26695]
         (69 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206858.1|  (NC_000915) hypothetical protein [Helicoba...   147  3e-35
ref|NP_222771.1|  (NC_000921) putative [Helicobacter pylori ...   139  9e-33
gb|AAD27692.1|AF125214_2  (AF125214) urease-enhancing factor...    48  2e-05

>ref|NP_206858.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64527 hypothetical protein HP0057 - Helicobacter pylori (strain 26695)
 gb|AAD07135.1| (AE000528) H. pylori predicted coding region HP0057 [Helicobacter
          pylori 26695]
          Length = 69

 Score =  147 bits (371), Expect = 3e-35
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MKTIKNGMMIGTLGALLLSGCSSFDAQRFACIPKDHSLKDASTKKEVQYTPKGFFDPYSS 60
          MKTIKNGMMIGTLGALLLSGCSSFDAQRFACIPKDHSLKDASTKKEVQYTPKGFFDPYSS
Sbjct: 1  MKTIKNGMMIGTLGALLLSGCSSFDAQRFACIPKDHSLKDASTKKEVQYTPKGFFDPYSS 60

Query: 61 NLNHWDSTF 69
          NLNHWDSTF
Sbjct: 61 NLNHWDSTF 69



>ref|NP_222771.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71980 hypothetical protein jhp0049 - Helicobacter pylori (strain J99)
 gb|AAD05633.1| (AE001444) putative [Helicobacter pylori J99]
          Length = 69

 Score =  139 bits (349), Expect = 9e-33
 Identities = 64/69 (92%), Positives = 66/69 (94%)

Query: 1  MKTIKNGMMIGTLGALLLSGCSSFDAQRFACIPKDHSLKDASTKKEVQYTPKGFFDPYSS 60
          MKTIKNG+MIGTLGALLLSGCSSFDAQRFAC+PKDHS KDASTKKE QY PKGFFDPYSS
Sbjct: 1  MKTIKNGIMIGTLGALLLSGCSSFDAQRFACLPKDHSSKDASTKKEAQYIPKGFFDPYSS 60

Query: 61 NLNHWDSTF 69
          NLNHWDSTF
Sbjct: 61 NLNHWDSTF 69



>gb|AAD27692.1|AF125214_2 (AF125214) urease-enhancing factor Lpp [Helicobacter pylori]
          Length = 62

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 32/65 (49%), Positives = 37/65 (56%), Gaps = 13/65 (20%)

Query: 1  MKTIKNGMMIGTLGALLLSGCSS----FDAQRFACIPKDHSLKDASTKKEVQYTPKGFFD 56
          MKTI+N M IG   A LL GC+S    FDA R AC+      KDA  +KE  +TPK F  
Sbjct: 1  MKTIRNSMFIG---ASLLGGCASVETRFDALRVACV------KDAVIEKESHHTPKDFGS 51

Query: 57 PYSSN 61
           Y SN
Sbjct: 52 FYFSN 56



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,957,063
Number of Sequences: 1026957
Number of extensions: 1391905
Number of successful extensions: 2752
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2749
Number of HSP's gapped (non-prelim): 3
length of query: 69
length of database: 324,149,939
effective HSP length: 45
effective length of query: 24
effective length of database: 277,936,874
effective search space: 6670484976
effective search space used: 6670484976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 91 (39.7 bits)