BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645193|ref|NP_207363.1| hypothetical protein
[Helicobacter pylori 26695]
(255 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207363.1| (NC_000915) hypothetical protein [Helicoba... 518 e-146
ref|NP_223233.1| (NC_000921) putative [Helicobacter pylori ... 483 e-136
ref|NP_282746.1| (NC_002163) hypothetical protein Cj1618c [... 137 1e-31
ref|NP_653925.1| (NC_003995) MoaA_NifB_PqqE, moaA / nifB / ... 109 3e-23
>ref|NP_207363.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64590 hypothetical protein HP0568 - Helicobacter pylori (strain 26695)
gb|AAD07630.1| (AE000570) H. pylori predicted coding region HP0568 [Helicobacter
pylori 26695]
Length = 255
Score = 518 bits (1335), Expect = e-146
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MPLELFEKVCKEVAPLTQMITLHVLGDPCKLKNLNHYLSTARRFSLKVDLVTSGVYLHDF 60
MPLELFEKVCKEVAPLTQMITLHVLGDPCKLKNLNHYLSTARRFSLKVDLVTSGVYLHDF
Sbjct: 1 MPLELFEKVCKEVAPLTQMITLHVLGDPCKLKNLNHYLSTARRFSLKVDLVTSGVYLHDF 60
Query: 61 ETLLQDVIYQISISLDAGLDHRNKLNQHRYIQKILEFCRYKCEKNSEVFLNLRIQDSTLD 120
ETLLQDVIYQISISLDAGLDHRNKLNQHRYIQKILEFCRYKCEKNSEVFLNLRIQDSTLD
Sbjct: 61 ETLLQDVIYQISISLDAGLDHRNKLNQHRYIQKILEFCRYKCEKNSEVFLNLRIQDSTLD 120
Query: 121 KHQNLIKPFLESFECVSLEGLKTQGRARLFKKSFLNIQKTFKWPSLNAQNPLNQKSKIPY 180
KHQNLIKPFLESFECVSLEGLKTQGRARLFKKSFLNIQKTFKWPSLNAQNPLNQKSKIPY
Sbjct: 121 KHQNLIKPFLESFECVSLEGLKTQGRARLFKKSFLNIQKTFKWPSLNAQNPLNQKSKIPY 180
Query: 181 CYGLIKQIAILSNGVVVPCCMDTQANISLGDLNHTPLKDVLKSQKAMAIKTHFLKGEALE 240
CYGLIKQIAILSNGVVVPCCMDTQANISLGDLNHTPLKDVLKSQKAMAIKTHFLKGEALE
Sbjct: 181 CYGLIKQIAILSNGVVVPCCMDTQANISLGDLNHTPLKDVLKSQKAMAIKTHFLKGEALE 240
Query: 241 LLCQNCSYPLIRYKK 255
LLCQNCSYPLIRYKK
Sbjct: 241 LLCQNCSYPLIRYKK 255
>ref|NP_223233.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71924 hypothetical protein jhp0515 - Helicobacter pylori (strain J99)
gb|AAD06091.1| (AE001484) putative [Helicobacter pylori J99]
Length = 255
Score = 483 bits (1244), Expect = e-136
Identities = 235/255 (92%), Positives = 245/255 (95%)
Query: 1 MPLELFEKVCKEVAPLTQMITLHVLGDPCKLKNLNHYLSTARRFSLKVDLVTSGVYLHDF 60
MPLELFEKVCKE PLT MITLHVLGDPCKLKNLN YL+ A+RFSLKVDLVTSG YLH+F
Sbjct: 1 MPLELFEKVCKEAVPLTPMITLHVLGDPCKLKNLNRYLNAAKRFSLKVDLVTSGAYLHNF 60
Query: 61 ETLLQDVIYQISISLDAGLDHRNKLNQHRYIQKILEFCRYKCEKNSEVFLNLRIQDSTLD 120
ETLLQD IYQISISLDAGLD+ NKLNQHRYIQKILEFCRYKCEKNSEVFLNLRIQDSTLD
Sbjct: 61 ETLLQDAIYQISISLDAGLDNHNKLNQHRYIQKILEFCRYKCEKNSEVFLNLRIQDSTLD 120
Query: 121 KHQNLIKPFLESFECVSLEGLKTQGRARLFKKSFLNIQKTFKWPSLNAQNPLNQKSKIPY 180
KHQNLIKPFLESFECVSLE LK+QGRARLFKKSFLNIQKTFKWP+LNAQNPLNQ+SKIPY
Sbjct: 121 KHQNLIKPFLESFECVSLETLKSQGRARLFKKSFLNIQKTFKWPNLNAQNPLNQESKIPY 180
Query: 181 CYGLIKQIAILSNGVVVPCCMDTQANISLGDLNHTPLKDVLKSQKAMAIKTHFLKGEALE 240
CYGLIKQIAILSNGVVVPCCMDTQA+I+LGDLNHTPLKD+L SQKAMAIKTHFLKGEALE
Sbjct: 181 CYGLIKQIAILSNGVVVPCCMDTQAHINLGDLNHTPLKDILNSQKAMAIKTHFLKGEALE 240
Query: 241 LLCQNCSYPLIRYKK 255
LLCQNCSYPLIRYKK
Sbjct: 241 LLCQNCSYPLIRYKK 255
>ref|NP_282746.1| (NC_002163) hypothetical protein Cj1618c [Campylobacter jejuni]
pir||H81257 hypothetical protein Cj1618c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73606.1| (AL139079) hypothetical protein Cj1618c [Campylobacter jejuni]
Length = 305
Score = 137 bits (345), Expect = 1e-31
Identities = 87/255 (34%), Positives = 146/255 (57%), Gaps = 14/255 (5%)
Query: 1 MPLELFEKVCKEVAPLTQMITLHVLGDPCKLKNLNHYLSTARRFSLKVDLVTSGVYLHDF 60
M E F+ + E++ ++ T H+LGDP L NL +YL A+ ++K+++ TSG YL+
Sbjct: 51 MSEEKFQNLAYEISNKAELFTFHLLGDPLLLPNLENYLKIAKDEAMKLEITTSGFYLNSK 110
Query: 61 ETLL---QDVIYQISISLDAGLDHRNKLNQHRYIQKILEFCRYKCEKNSEVFLNLRIQDS 117
L + I+QI+ISL + L ++K++ +Y + ILE C+ E+ S F+NLR+ +
Sbjct: 111 NQALLLGYENIHQINISLMSFLS-QSKISLEQYFKPILELCKKHLEQKSLSFINLRLWN- 168
Query: 118 TLDKHQNLIKPFLESFECVSLEGLK----TQGRARLFKKSFLNIQKTFKWPSLNAQNPLN 173
LD + K L+ +E ++ E + RL + L+ K FKWP+L + PL
Sbjct: 169 -LDANFKAPKSNLKIYEFLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDE-PLY 226
Query: 174 QKSKIPYCYGLIKQIAILSNGVVVPCCMDTQANISLGDLNHTPLKDVLKSQKAMAIKTHF 233
+K K C+ L +QI ILS+G +VPCC+DT+A+I+LG++ + +S + +K F
Sbjct: 227 KKGK---CHALKEQIGILSDGSLVPCCLDTKADINLGNVFENNFDKLFRSPRIKMMKKAF 283
Query: 234 LKGEALELLCQNCSY 248
+ + +E LCQ C +
Sbjct: 284 EEDKRIEKLCQTCEF 298
>ref|NP_653925.1| (NC_003995) MoaA_NifB_PqqE, moaA / nifB / pqqE family [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 292
Score = 109 bits (272), Expect = 3e-23
Identities = 69/258 (26%), Positives = 132/258 (50%), Gaps = 17/258 (6%)
Query: 3 LELFEKVCKEVAPLTQMITLHVLGDPCKLKNLNHYLSTARRFSLKVDLVTSGVYLHD--F 60
+E F K ++ P T I LHV G+P ++ L + KV++ T+G ++
Sbjct: 34 VEDFAKRLDQIKPHTDYIYLHVKGEPLLHPKIDQLLDLSHEKGFKVNITTNGTLINKRRH 93
Query: 61 ETLLQDVIYQISISLDAGLDHRNKLNQHRYIQKILEFCRYKCEKNSEVFLNLRIQDSTLD 120
L + + Q++ SL + H ++ Y++ IL F R + S++ ++LR+ + T D
Sbjct: 94 RLLNKPALRQMNFSLHSFDGHPGSQDKEGYVRSILSFIR-EATSQSDLIVSLRLWNLTQD 152
Query: 121 --------KHQNLIKPFLESFEC-VSLEGLKTQGRA-RLFKKSFLNIQKTFKWPSLNAQN 170
K++ L+ F+ +E T G+ ++ ++ F+N F+WP+L+ +
Sbjct: 153 NKTNAEIQKNRELLSIIENEFDLSYQIEEKLTPGKGIKIAERVFINQDYEFQWPALHEEE 212
Query: 171 PLNQKSKIPYCYGLIKQIAILSNGVVVPCCMDTQANISLGDLNHTPLKDVLKSQKAMAIK 230
+ +C+GL Q IL+NG V+PCC+D + I+LG++N+ ++++ ++A I
Sbjct: 213 DDGKG----FCHGLRNQAGILANGTVIPCCLDGEGIINLGNINNDSFSNIIEGERATNIV 268
Query: 231 THFLKGEALELLCQNCSY 248
F + A+E LC+ C Y
Sbjct: 269 DGFSRRVAVEELCRKCGY 286
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,296,776
Number of Sequences: 1026957
Number of extensions: 5583167
Number of successful extensions: 12083
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12074
Number of HSP's gapped (non-prelim): 4
length of query: 255
length of database: 324,149,939
effective HSP length: 118
effective length of query: 137
effective length of database: 202,969,013
effective search space: 27806754781
effective search space used: 27806754781
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 96 (41.6 bits)