BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645198|ref|NP_207368.1| hypothetical protein
[Helicobacter pylori 26695]
(110 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207368.1| (NC_000915) hypothetical protein [Helicoba... 212 6e-55
ref|NP_223238.1| (NC_000921) putative [Helicobacter pylori ... 211 2e-54
ref|NP_282078.1| (NC_002163) putative membrane protein [Cam... 115 1e-25
>ref|NP_207368.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64591 hypothetical protein HP0573 - Helicobacter pylori (strain 26695)
gb|AAD07649.1| (AE000571) H. pylori predicted coding region HP0573 [Helicobacter
pylori 26695]
Length = 110
Score = 212 bits (540), Expect = 6e-55
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MFTQWFILTIAIVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRA 60
MFTQWFILTIAIVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRA
Sbjct: 1 MFTQWFILTIAIVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRA 60
Query: 61 LGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEALL 110
LGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEALL
Sbjct: 61 LGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEALL 110
>ref|NP_223238.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71921 hypothetical protein jhp0520 - Helicobacter pylori (strain J99)
gb|AAD06101.1| (AE001485) putative [Helicobacter pylori J99]
Length = 110
Score = 211 bits (536), Expect = 2e-54
Identities = 108/110 (98%), Positives = 110/110 (99%)
Query: 1 MFTQWFILTIAIVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRA 60
MFTQWFILTIA+VFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRA
Sbjct: 1 MFTQWFILTIAVVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRA 60
Query: 61 LGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEALL 110
LGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIK+LEQKIEALL
Sbjct: 61 LGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKQLEQKIEALL 110
>ref|NP_282078.1| (NC_002163) putative membrane protein [Campylobacter jejuni]
pir||E81366 probable membrane protein Cj0926 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73183.1| (AL139076) putative membrane protein [Campylobacter jejuni]
Length = 110
Score = 115 bits (287), Expect = 1e-25
Identities = 55/110 (50%), Positives = 82/110 (74%)
Query: 1 MFTQWFILTIAIVFILYMGVRTFFFKTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRA 60
MFT W +LTI I +Y+ V F++KT+ +++ + +K L + EI+I+K Q+QLQR+
Sbjct: 1 MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLDDTEIVIRKLQIQLQRS 60
Query: 61 LGNIDILTQEMSSLKTELKALKQRNSEYKGESDKYKNRIKELEQKIEALL 110
LGNIDILT+E++ +K +L +L+ RNS+Y+ E+DK + RIKELE KIEALL
Sbjct: 61 LGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKELEAKIEALL 110
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.134 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,878,475
Number of Sequences: 1026957
Number of extensions: 1598212
Number of successful extensions: 18194
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18191
Number of HSP's gapped (non-prelim): 3
length of query: 110
length of database: 324,149,939
effective HSP length: 86
effective length of query: 24
effective length of database: 235,831,637
effective search space: 5659959288
effective search space used: 5659959288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 90 (39.3 bits)