BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645204|ref|NP_207374.1| hypothetical protein
[Helicobacter pylori 26695]
(184 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207374.1| (NC_000915) hypothetical protein [Helicoba... 352 9e-97
ref|NP_223244.1| (NC_000921) putative [Helicobacter pylori ... 333 6e-91
ref|NP_010726.1| (NC_001136) Hypothetical ORF; Ydr438wp [Sa... 41 0.007
gb|AAF31681.1|AF178679_8 (AF178679) NADH dehydrogenase subu... 41 0.007
>ref|NP_207374.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64592 hypothetical protein HP0579 - Helicobacter pylori (strain 26695)
gb|AAD07645.1| (AE000571) H. pylori predicted coding region HP0579 [Helicobacter
pylori 26695]
Length = 184
Score = 352 bits (904), Expect = 9e-97
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MLISSSYTLSFIWLFLIFFFFKNKPLGLRFSLSFISVILSNIALKDSLSLNEFLSSFTAP 60
MLISSSYTLSFIWLFLIFFFFKNKPLGLRFSLSFISVILSNIALKDSLSLNEFLSSFTAP
Sbjct: 1 MLISSSYTLSFIWLFLIFFFFKNKPLGLRFSLSFISVILSNIALKDSLSLNEFLSSFTAP 60
Query: 61 LSPFSCLLILAYALFSCRLLQKPPLETLQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMAS 120
LSPFSCLLILAYALFSCRLLQKPPLETLQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMAS
Sbjct: 61 LSPFSCLLILAYALFSCRLLQKPPLETLQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMAS 120
Query: 121 LIFSALFCSSLFLSSPLLGVIALVALSSSLLMRSNFQILDSLLDFPLLLFVFFKTLSLVK 180
LIFSALFCSSLFLSSPLLGVIALVALSSSLLMRSNFQILDSLLDFPLLLFVFFKTLSLVK
Sbjct: 121 LIFSALFCSSLFLSSPLLGVIALVALSSSLLMRSNFQILDSLLDFPLLLFVFFKTLSLVK 180
Query: 181 KRLY 184
KRLY
Sbjct: 181 KRLY 184
>ref|NP_223244.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71921 hypothetical protein jhp0526 - Helicobacter pylori (strain J99)
gb|AAD06107.1| (AE001485) putative [Helicobacter pylori J99]
Length = 183
Score = 333 bits (854), Expect = 6e-91
Identities = 172/183 (93%), Positives = 176/183 (95%)
Query: 1 MLISSSYTLSFIWLFLIFFFFKNKPLGLRFSLSFISVILSNIALKDSLSLNEFLSSFTAP 60
M ISSSYTLSF+WLFLIFFFFKNKPLGLRFSLS ISVILSNIALKDSLSLNEFLSSFTAP
Sbjct: 1 MFISSSYTLSFVWLFLIFFFFKNKPLGLRFSLSLISVILSNIALKDSLSLNEFLSSFTAP 60
Query: 61 LSPFSCLLILAYALFSCRLLQKPPLETLQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMAS 120
LSPFSCLLILAYA FSC +L+KPPLETLQSYSVMLFFNLLLLTD+LGFLPFSIYHHFMAS
Sbjct: 61 LSPFSCLLILAYASFSCHILKKPPLETLQSYSVMLFFNLLLLTDILGFLPFSIYHHFMAS 120
Query: 121 LIFSALFCSSLFLSSPLLGVIALVALSSSLLMRSNFQILDSLLDFPLLLFVFFKTLSLVK 180
LIFSALFCSSLFLSSPLLGVIALVALSSSLLMRSNFQILDSLLDFPL LFVFFKTL L K
Sbjct: 121 LIFSALFCSSLFLSSPLLGVIALVALSSSLLMRSNFQILDSLLDFPLFLFVFFKTLYLAK 180
Query: 181 KRL 183
KRL
Sbjct: 181 KRL 183
>ref|NP_010726.1| (NC_001136) Hypothetical ORF; Ydr438wp [Saccharomyces cerevisiae]
pir||S69718 hypothetical protein YDR438w - yeast (Saccharomyces cerevisiae)
gb|AAB64860.1| (U33007) Ydr438wp; CAI: 0.11 [Saccharomyces cerevisiae]
Length = 370
Score = 40.8 bits (94), Expect = 0.007
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 22/160 (13%)
Query: 6 SYTLSFIWLFL-----IFFFFKNKPLGLRFSL-SFISVILSNIALKDSLSLNEFLSSFTA 59
S T SF LFL I F K LGL SL I +++ + +DS+S + FL T
Sbjct: 151 SSTSSFFTLFLATSLGIETFSTKKLLGLFVSLFGIILIVMQSSKQQDSVSASSFLVGNTL 210
Query: 60 PL------SPFSCLLILAYALFSCRLLQKPPLETLQSYSVMLFFNLLLLTDVLGFLPFSI 113
L S ++ LL + RL + L + ++ +LF+ +L++ D+ F +
Sbjct: 211 ALLGSLGYSVYTTLLKYEISSKGLRLDIQMFLGYVGIFTFLLFWPILIILDITHMETFEL 270
Query: 114 YHHFMAS--------LIFSA--LFCSSLFLSSPLLGVIAL 143
+F S +IF + +C +L L+SPL+ +AL
Sbjct: 271 PSNFHISFLVMLNCIIIFVSDYFWCKALILTSPLVVTVAL 310
>gb|AAF31681.1|AF178679_8 (AF178679) NADH dehydrogenase subunit 6 [Galathealinum brachiosum]
Length = 155
Score = 40.8 bits (94), Expect = 0.007
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 39/178 (21%)
Query: 9 LSFIWLFLIFFFFKNKPLGLRFSLSFISVILSNIALKDSLSLNEFLSSFTAPLS--PFSC 66
+S + FL+ F F P+ L + +S I S I F SS+ A L +S
Sbjct: 6 MSLLMSFLLSFLFIFNPMSLALHILMLSFISSIII--------SFYSSWMAILMFLIYSS 57
Query: 67 LLILAYALFSCRLLQKPPLETLQSYSVMLFFNLLLLTDVLGFLPFSIYHHFMASLIFSAL 126
+++ + FS + K LE S ++LF+NLL F F +Y+ I+
Sbjct: 58 GMLIMFIYFSAISMNK-KLEFFNSIPLILFYNLLF------FFSFKMYN------IYPIY 104
Query: 127 FCSSLFLSSPLLGVIALVALSSSLLMRSNFQILDSLLDFPLLLFVFFKTLSLVKKRLY 184
SSL + S ++ LL++SN +L L+LF+F + +VK LY
Sbjct: 105 KFSSLQMPSMIM-----------LLIKSNMNML-----IFLILFLFISLIIVVKISLY 146
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.335 0.147 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,626,148
Number of Sequences: 1026957
Number of extensions: 3620370
Number of successful extensions: 20879
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20876
Number of HSP's gapped (non-prelim): 4
length of query: 184
length of database: 324,149,939
effective HSP length: 114
effective length of query: 70
effective length of database: 207,076,841
effective search space: 14495378870
effective search space used: 14495378870
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 93 (40.4 bits)