BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645205|ref|NP_207375.1| hypothetical protein
[Helicobacter pylori 26695]
(372 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207375.1| (NC_000915) hypothetical protein [Helicoba... 749 0.0
ref|NP_223245.1| (NC_000921) putative [Helicobacter pylori ... 705 0.0
gb|AAM61202.1| (AY084639) unknown [Arabidopsis thaliana] 61 2e-08
ref|NP_568864.1| (NM_125153) putative protein [Arabidopsis ... 60 3e-08
dbj|BAB09588.1| (AB018118) gene_id:MRI1.6~pir||D64592~simil... 55 2e-06
ref|NP_460219.1| (NC_003197) putative cytoplasmic protein [... 50 5e-05
ref|NP_456258.1| (NC_003198) hypothetical protein [Salmonel... 48 2e-04
>ref|NP_207375.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64592 hypothetical protein HP0580 - Helicobacter pylori (strain 26695)
gb|AAD07646.1| (AE000571) H. pylori predicted coding region HP0580 [Helicobacter
pylori 26695]
Length = 372
Score = 749 bits (1935), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MEPSRNRLKHAAFFVGLFIVLFLIIMKRQTPPYAFMRNQTLVTQTPPYFTQLTIPKPNDA 60
MEPSRNRLKHAAFFVGLFIVLFLIIMKRQTPPYAFMRNQTLVTQTPPYFTQLTIPKPNDA
Sbjct: 1 MEPSRNRLKHAAFFVGLFIVLFLIIMKRQTPPYAFMRNQTLVTQTPPYFTQLTIPKPNDA 60
Query: 61 LSVHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAFIILTKEELSHY 120
LSVHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAFIILTKEELSHY
Sbjct: 61 LSVHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAFIILTKEELSHY 120
Query: 121 SHEYIKKLGNPLLFLHDDKILLFVVGVSMGGWATSKIYQLESALEPIRFKFARKLSLSPF 180
SHEYIKKLGNPLLFLHDDKILLFVVGVSMGGWATSKIYQLESALEPIRFKFARKLSLSPF
Sbjct: 121 SHEYIKKLGNPLLFLHDDKILLFVVGVSMGGWATSKIYQLESALEPIRFKFARKLSLSPF 180
Query: 181 LNLSHLIRNKPLSTTDGGFMLPLYHELATQYPLLLKFDQQNNPRELLRPNALNHQLQPSL 240
LNLSHLIRNKPLSTTDGGFMLPLYHELATQYPLLLKFDQQNNPRELLRPNALNHQLQPSL
Sbjct: 181 LNLSHLIRNKPLSTTDGGFMLPLYHELATQYPLLLKFDQQNNPRELLRPNALNHQLQPSL 240
Query: 241 TPFKDCAIMAFRNHSFKDSLMLETCKTPTAWQKPMLTNLKNLNDALNLINLNEELYLIHN 300
TPFKDCAIMAFRNHSFKDSLMLETCKTPTAWQKPMLTNLKNLNDALNLINLNEELYLIHN
Sbjct: 241 TPFKDCAIMAFRNHSFKDSLMLETCKTPTAWQKPMLTNLKNLNDALNLINLNEELYLIHN 300
Query: 301 PSDSSLRRKELWLSKLENSNSFKTLKVLDKANEVSYPSYSLNPHFIDIVYTYNRSHIKHI 360
PSDSSLRRKELWLSKLENSNSFKTLKVLDKANEVSYPSYSLNPHFIDIVYTYNRSHIKHI
Sbjct: 301 PSDSSLRRKELWLSKLENSNSFKTLKVLDKANEVSYPSYSLNPHFIDIVYTYNRSHIKHI 360
Query: 361 RFNMAYLKSLLK 372
RFNMAYLKSLLK
Sbjct: 361 RFNMAYLKSLLK 372
>ref|NP_223245.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71921 hypothetical protein jhp0527 - Helicobacter pylori (strain J99)
gb|AAD06108.1| (AE001485) putative [Helicobacter pylori J99]
Length = 372
Score = 705 bits (1820), Expect = 0.0
Identities = 347/372 (93%), Positives = 357/372 (95%)
Query: 1 MEPSRNRLKHAAFFVGLFIVLFLIIMKRQTPPYAFMRNQTLVTQTPPYFTQLTIPKPNDA 60
MEPSRNRLKHAAFFVGLFIVLFLIIMK QT PYAF NQ LVTQTPPYFTQLTIPKPNDA
Sbjct: 1 MEPSRNRLKHAAFFVGLFIVLFLIIMKHQTSPYAFTHNQALVTQTPPYFTQLTIPKPNDA 60
Query: 61 LSVHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAFIILTKEELSHY 120
LS HASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAFI+LTKEELSH+
Sbjct: 61 LSAHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAFILLTKEELSHH 120
Query: 121 SHEYIKKLGNPLLFLHDDKILLFVVGVSMGGWATSKIYQLESALEPIRFKFARKLSLSPF 180
SHEYIKKLGNPLLFLHD+KILLFVVGVSMGGWATSKIYQ ESALEPI FKFARKLSLSPF
Sbjct: 121 SHEYIKKLGNPLLFLHDNKILLFVVGVSMGGWATSKIYQFESALEPIHFKFARKLSLSPF 180
Query: 181 LNLSHLIRNKPLSTTDGGFMLPLYHELATQYPLLLKFDQQNNPRELLRPNALNHQLQPSL 240
LNLSHL+RNKPL+TTDGGFMLPLYHELATQYPLLLKFDQQNNPRELLRPN LNHQLQPSL
Sbjct: 181 LNLSHLVRNKPLNTTDGGFMLPLYHELATQYPLLLKFDQQNNPRELLRPNTLNHQLQPSL 240
Query: 241 TPFKDCAIMAFRNHSFKDSLMLETCKTPTAWQKPMLTNLKNLNDALNLINLNEELYLIHN 300
TPFKDCA+MAFRNHSFKDSLMLETCKTPT WQKP+ TNLKNL+D+LNL+NLN LYLIHN
Sbjct: 241 TPFKDCAVMAFRNHSFKDSLMLETCKTPTDWQKPISTNLKNLDDSLNLLNLNGILYLIHN 300
Query: 301 PSDSSLRRKELWLSKLENSNSFKTLKVLDKANEVSYPSYSLNPHFIDIVYTYNRSHIKHI 360
PSD SLRRKELWLSKLENSNSFKTLKVLDKANEVSYPSYSLNPHFIDIVYTYNRSHIKHI
Sbjct: 301 PSDLSLRRKELWLSKLENSNSFKTLKVLDKANEVSYPSYSLNPHFIDIVYTYNRSHIKHI 360
Query: 361 RFNMAYLKSLLK 372
RFNMAYL SLLK
Sbjct: 361 RFNMAYLNSLLK 372
>gb|AAM61202.1| (AY084639) unknown [Arabidopsis thaliana]
Length = 347
Score = 60.8 bits (146), Expect = 2e-08
Identities = 74/313 (23%), Positives = 135/313 (42%), Gaps = 36/313 (11%)
Query: 62 SVHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAFIILTKEELSHYS 121
S HAS+++ + D+ L+AYF GT+EGA DVKI F K +W I+ + + Y
Sbjct: 24 SCHASTIVEVVKDHFLAAYFGGTREGAPDVKIWLQHF--KDGQWDSPVIVDEEPGVPMY- 80
Query: 122 HEYIKKLGNPLLF-LHDDKILLFV-VGVSMGGWATSKIYQLESALEPIRFKFARKLSLSP 179
NP+LF L ++LLF +G + W+ + + + + L P
Sbjct: 81 --------NPVLFKLPSHELLLFYKIGQEVQKWSGCMKRSYDKGI-----TWTEREQLPP 127
Query: 180 FLNLSHLIRNKPLSTTDGGFMLPLYHELATQYPLLLKFD-------QQNNPRELLRPNAL 232
+ I+NKP+ DG + E + ++ ++ P + +
Sbjct: 128 --GILGPIKNKPILLEDGTLLCGSSVESWNSWGAWMEVTSDAGRTWRKKGPIYIQGKSLS 185
Query: 233 NHQLQPSLTPFKDCAIMAFRNHSFKDSLML-ETCKTPTAWQKPMLTNLKNLNDALNLINL 291
Q P T + I+ R+ + D + + E+ W + T L N N ++ + L
Sbjct: 186 VIQPVPYQTAAGNLRIL-LRSFTGIDKICISESLDGGENWSFAVPTVLPNPNSGIDGVKL 244
Query: 292 NE-ELYLIHNPSDSSLRRKELWLSKLENSNSFKTLKVLDKA--NEVSYPS-YSLNPHFID 347
+ L L +N + + + L++ +S+ + L+++ E SYP+ +
Sbjct: 245 KDGRLVLAYNTDSRGVLKLGV---SLDDGDSWTDILTLEESPGMEYSYPAVIQAGDGNVH 301
Query: 348 IVYTYNRSHIKHI 360
+ YTYNR+ IKH+
Sbjct: 302 VTYTYNRTQIKHV 314
>ref|NP_568864.1| (NM_125153) putative protein [Arabidopsis thaliana]
Length = 352
Score = 60.5 bits (145), Expect = 3e-08
Identities = 74/313 (23%), Positives = 135/313 (42%), Gaps = 36/313 (11%)
Query: 62 SVHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAFIILTKEELSHYS 121
S HAS+++ + D+ L+AYF GT+EGA DVKI F K +W I+ + + Y
Sbjct: 29 SCHASTIVEVVKDHFLAAYFGGTREGAPDVKIWLQHF--KDGQWDSPVIVDEEPGVPMY- 85
Query: 122 HEYIKKLGNPLLF-LHDDKILLFV-VGVSMGGWATSKIYQLESALEPIRFKFARKLSLSP 179
NP+LF L ++LLF +G + W+ + + + + L P
Sbjct: 86 --------NPVLFKLPSHELLLFYKIGQEVQKWSGCMKRSYDKGI-----TWTEREQLPP 132
Query: 180 FLNLSHLIRNKPLSTTDGGFMLPLYHELATQYPLLLKFD-------QQNNPRELLRPNAL 232
+ I+NKP+ DG + E + ++ ++ P + +
Sbjct: 133 --GILGPIKNKPILLEDGTLLCGSSVESWNSWGAWMEVTSDAGRTWRKKGPIYIQGKSLS 190
Query: 233 NHQLQPSLTPFKDCAIMAFRNHSFKDSLML-ETCKTPTAWQKPMLTNLKNLNDALNLINL 291
Q P T + I+ R+ + D + + E+ W + T L N N ++ + L
Sbjct: 191 VIQPVPYQTAAGNLRIL-LRSFTGIDRICISESLDGGENWSFAVPTVLPNPNSGIDGVKL 249
Query: 292 NE-ELYLIHNPSDSSLRRKELWLSKLENSNSFKTLKVLDKA--NEVSYPS-YSLNPHFID 347
+ L L +N + + + L++ +S+ + L+++ E SYP+ +
Sbjct: 250 KDGRLVLAYNTDSRGVLKLGV---SLDDGDSWTDILTLEESPGMEYSYPAVIQAGDGNVH 306
Query: 348 IVYTYNRSHIKHI 360
+ YTYNR+ IKH+
Sbjct: 307 VTYTYNRTQIKHV 319
>dbj|BAB09588.1| (AB018118) gene_id:MRI1.6~pir||D64592~similar to unknown protein
[Arabidopsis thaliana]
Length = 371
Score = 54.7 bits (130), Expect = 2e-06
Identities = 78/330 (23%), Positives = 137/330 (40%), Gaps = 51/330 (15%)
Query: 62 SVHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAFIILTKEELSHYS 121
S HAS+++ + D+ L+AYF GT+EGA DVKI F K +W I+ + + Y
Sbjct: 29 SCHASTIVEVVKDHFLAAYFGGTREGAPDVKIWLQHF--KDGQWDSPVIVDEEPGVPMY- 85
Query: 122 HEYIKKLGNPLLF-LHDDKILLFV-VGVSMGGWA-------------TSKIYQLESALEP 166
NP+LF L ++LLF +G + W+ T + L P
Sbjct: 86 --------NPVLFKLPSHELLLFYKIGQEVQKWSGCMKRSYDKGITWTEREQLPPGILGP 137
Query: 167 IRFKFARKLSLSPFLNLSHLIRNK----PLSTTDGGFMLPLYHELATQYPLLLKFD---- 218
I+ K L L + I+ K P+ DG + E + ++
Sbjct: 138 IKNKV-----LVALRRLDYSIKTKPFVLPILLEDGTLLCGSSVESWNSWGAWMEVTSDAG 192
Query: 219 ---QQNNPRELLRPNALNHQLQPSLTPFKDCAIMAFRNHSFKDSLML-ETCKTPTAWQKP 274
++ P + + Q P T + I+ R+ + D + + E+ W
Sbjct: 193 RTWRKKGPIYIQGKSLSVIQPVPYQTAAGNLRIL-LRSFTGIDRICISESLDGGENWSFA 251
Query: 275 MLTNLKNLNDALNLINLNE-ELYLIHNPSDSSLRRKELWLSKLENSNSFKTLKVLDKA-- 331
+ T L N N ++ + L + L L +N + + + L++ +S+ + L+++
Sbjct: 252 VPTVLPNPNSGIDGVKLKDGRLVLAYNTDSRGVLKLGV---SLDDGDSWTDILTLEESPG 308
Query: 332 NEVSYPS-YSLNPHFIDIVYTYNRSHIKHI 360
E SYP+ + + YTYNR+ IKH+
Sbjct: 309 MEYSYPAVIQAGDGNVHVTYTYNRTQIKHV 338
>ref|NP_460219.1| (NC_003197) putative cytoplasmic protein [Salmonella typhimurium
LT2]
gb|AAL20178.1| (AE008754) putative cytoplasmic protein [Salmonella typhimurium
LT2]
Length = 347
Score = 49.7 bits (117), Expect = 5e-05
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 51 QLTIPKPN-DALSVHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAF 109
Q+ +P+ ++ HAS+L+ LP L++A+F+G +EG+ D I + ++ N W+
Sbjct: 9 QVILPESGTESFQCHASTLVRLPCGTLVAAWFAGLREGSEDTAIWLSRYEH--NIWTTPQ 66
Query: 110 IILTKEELSHYSHEYIKKLGNPLLFLHDDKILLFV-VGVSMGGWAT 154
+ +E +H+ NP+LF DK+ LF VG + W T
Sbjct: 67 RVAAREGEAHW---------NPVLFYPSDKLWLFYKVGSDVHVWKT 103
>ref|NP_456258.1| (NC_003198) hypothetical protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD02102.1| (AL627271) hypothetical protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 347
Score = 47.8 bits (112), Expect = 2e-04
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 51 QLTIPKPN-DALSVHASSLISLPNDNLLSAYFSGTKEGARDVKISANLFDSKTNRWSEAF 109
Q+ +P+ ++ HAS+L+ LP L++A+F+G EG+ D I + ++ N W+
Sbjct: 9 QVILPESGTESFQCHASTLVRLPCGTLVAAWFAGLCEGSEDTAIWLSRYEH--NIWTTPQ 66
Query: 110 IILTKEELSHYSHEYIKKLGNPLLFLHDDKILLFV-VGVSMGGWAT 154
+ +E +H+ NP+LF DK+ LF VG + W T
Sbjct: 67 RVAAREGEAHW---------NPVLFYPSDKLWLFYKVGSGVHVWKT 103
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242,364,863
Number of Sequences: 1026957
Number of extensions: 10043719
Number of successful extensions: 23282
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23270
Number of HSP's gapped (non-prelim): 12
length of query: 372
length of database: 324,149,939
effective HSP length: 123
effective length of query: 249
effective length of database: 197,834,228
effective search space: 49260722772
effective search space used: 49260722772
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 98 (42.4 bits)