BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645208|ref|NP_207378.1| hypothetical protein
[Helicobacter pylori 26695]
(293 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207378.1| (NC_000915) hypothetical protein [Helicoba... 567 e-161
ref|NP_223248.1| (NC_000921) putative [Helicobacter pylori ... 508 e-143
ref|NP_281543.1| (NC_002163) putative transmembrane protein... 44 0.002
emb|CAA04058.1| (AJ000400) hypothetical protein [Campylobac... 43 0.005
>ref|NP_207378.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64592 hypothetical protein HP0583 - Helicobacter pylori (strain 26695)
gb|AAD07648.1| (AE000571) H. pylori predicted coding region HP0583 [Helicobacter
pylori 26695]
Length = 293
Score = 567 bits (1461), Expect = e-161
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MRLLFLLLSAAFMLLAEEKISLNDDAPIKLVHWQNALKEVQPDSNAPATPPIKAVQTTLT 60
MRLLFLLLSAAFMLLAEEKISLNDDAPIKLVHWQNALKEVQPDSNAPATPPIKAVQTTLT
Sbjct: 1 MRLLFLLLSAAFMLLAEEKISLNDDAPIKLVHWQNALKEVQPDSNAPATPPIKAVQTTLT 60
Query: 61 FETPFNKTPKIMEVEGQKVIVLKNAKLDSKKTMDFKEASLNALEMFSYQNDIYLLSKKAK 120
FETPFNKTPKIMEVEGQKVIVLKNAKLDSKKTMDFKEASLNALEMFSYQNDIYLLSKKAK
Sbjct: 61 FETPFNKTPKIMEVEGQKVIVLKNAKLDSKKTMDFKEASLNALEMFSYQNDIYLLSKKAK 120
Query: 121 VELEIQASNSKDKKRLRFLFLPKGFHLAPPPNLKEKSQQTNLAQKDTNEQPQSPLNTLEL 180
VELEIQASNSKDKKRLRFLFLPKGFHLAPPPNLKEKSQQTNLAQKDTNEQPQSPLNTLEL
Sbjct: 121 VELEIQASNSKDKKRLRFLFLPKGFHLAPPPNLKEKSQQTNLAQKDTNEQPQSPLNTLEL 180
Query: 181 KPPLNLSHAYKALAVIAALLLILYVIKKKIVPTQGSFSAKDFKLEISVLGRVDANHKIIS 240
KPPLNLSHAYKALAVIAALLLILYVIKKKIVPTQGSFSAKDFKLEISVLGRVDANHKIIS
Sbjct: 181 KPPLNLSHAYKALAVIAALLLILYVIKKKIVPTQGSFSAKDFKLEISVLGRVDANHKIIS 240
Query: 241 IETNKERYLVLLSDKYGLLLDKISPKTSKEELIKEAENNIKNSKLGNLYAGKF 293
IETNKERYLVLLSDKYGLLLDKISPKTSKEELIKEAENNIKNSKLGNLYAGKF
Sbjct: 241 IETNKERYLVLLSDKYGLLLDKISPKTSKEELIKEAENNIKNSKLGNLYAGKF 293
>ref|NP_223248.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71922 hypothetical protein jhp0530 - Helicobacter pylori (strain J99)
gb|AAD06096.1| (AE001485) putative [Helicobacter pylori J99]
Length = 293
Score = 508 bits (1309), Expect = e-143
Identities = 263/293 (89%), Positives = 273/293 (92%)
Query: 1 MRLLFLLLSAAFMLLAEEKISLNDDAPIKLVHWQNALKEVQPDSNAPATPPIKAVQTTLT 60
MRLLFLLLSA MLLAEEKI L+DDAPIKLVHWQNALKEVQPDSNAPATPPIKAVQTTLT
Sbjct: 1 MRLLFLLLSATLMLLAEEKIPLSDDAPIKLVHWQNALKEVQPDSNAPATPPIKAVQTTLT 60
Query: 61 FETPFNKTPKIMEVEGQKVIVLKNAKLDSKKTMDFKEASLNALEMFSYQNDIYLLSKKAK 120
FETPFNKTPKIMEVEGQKVIVLKNA+LDSKKTMDFKEASLNALEMFSYQNDIYLLSKKAK
Sbjct: 61 FETPFNKTPKIMEVEGQKVIVLKNAQLDSKKTMDFKEASLNALEMFSYQNDIYLLSKKAK 120
Query: 121 VELEIQASNSKDKKRLRFLFLPKGFHLAPPPNLKEKSQQTNLAQKDTNEQPQSPLNTLEL 180
LEIQAS+SKDKK+LRFLFLPKGFHLAPPP+LKEKSQ NLA +D E+ +SP N LEL
Sbjct: 121 AGLEIQASSSKDKKQLRFLFLPKGFHLAPPPSLKEKSQHANLASQDEKERAKSPSNALEL 180
Query: 181 KPPLNLSHAYKALAVIAALLLILYVIKKKIVPTQGSFSAKDFKLEISVLGRVDANHKIIS 240
KPPL+LSHAYK LAVIA LLLILYVIKKKIVPT GSF KD KL+ISVLGRVDANHKIIS
Sbjct: 181 KPPLDLSHAYKGLAVIAVLLLILYVIKKKIVPTPGSFLKKDLKLDISVLGRVDANHKIIS 240
Query: 241 IETNKERYLVLLSDKYGLLLDKISPKTSKEELIKEAENNIKNSKLGNLYAGKF 293
IETNKERYLVLLSDKYGLLLDKISPKTSKEELIKEAEN IKNSKLGNLYAGKF
Sbjct: 241 IETNKERYLVLLSDKYGLLLDKISPKTSKEELIKEAENKIKNSKLGNLYAGKF 293
>ref|NP_281543.1| (NC_002163) putative transmembrane protein [Campylobacter jejuni]
pir||G81377 probable transmembrane protein Cj0352 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB74189.1| (AL139075) putative transmembrane protein [Campylobacter jejuni]
Length = 265
Score = 43.9 bits (102), Expect = 0.002
Identities = 44/229 (19%), Positives = 96/229 (41%), Gaps = 19/229 (8%)
Query: 55 VQTTLTFETPFNKTPKIMEVEGQKVIVLKNAKLDSKKTMDFKEASLNALEMFSYQNDIYL 114
V L+F+ +N + + ++ + + + ++ + + S N+ Y+
Sbjct: 30 VDLMLSFDNAYNGKISQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYI 89
Query: 115 -LSKKAKVELEIQASNSKDKKRLRFLFLPKGFHLAPPPNLKEKSQQTNLAQKDTNEQPQS 173
L K + LE+ + N K R+R + K + P SQ+ K T+ +
Sbjct: 90 MLQNKQNINLELSSINDKFGVRIRAIEQGKANIESAPTTTANNSQELMPKPKSTSLEGYD 149
Query: 174 PLNTLELKPPLNLSHAYKALAVIAALLLILYVIKKKIVPTQGSFSAKDFKLEISVLGRVD 233
N + + ++ LL++L+ KK +V + S +DF + +D
Sbjct: 150 YTNYI------------LVMLILVILLIVLWWFKKTMVYKNNNVS-RDFTMIFQRF--LD 194
Query: 234 ANHKIISIETNKERYLVLLSDKYGLLLDKISPKTSKEELIKEAENNIKN 282
N++++ + +RY +++ + +LL+ I + +E+ IK E KN
Sbjct: 195 KNNQLVVFDHANKRYTMIIGNS-NVLLESI--EIPEEQTIKHTEKTEKN 240
>emb|CAA04058.1| (AJ000400) hypothetical protein [Campylobacter jejuni]
Length = 265
Score = 42.7 bits (99), Expect = 0.005
Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 19/229 (8%)
Query: 55 VQTTLTFETPFNKTPKIMEVEGQKVIVLKNAKLDSKKTMDFKEASLNALEMFSYQNDIYL 114
V L+F+ +N + + ++ + + + ++ + + S N+ Y+
Sbjct: 30 VDLMLSFDNAYNGKISQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYI 89
Query: 115 -LSKKAKVELEIQASNSKDKKRLRFLFLPKGFHLAPPPNLKEKSQQTNLAQKDTNEQPQS 173
L K + LE+ + N K R+R + K + P SQ+ K T+ +
Sbjct: 90 MLQNKQNINLELSSINDKFGVRIRAIEQGKANIESAPTTTANNSQELMPKPKSTSLEGYD 149
Query: 174 PLNTLELKPPLNLSHAYKALAVIAALLLILYVIKKKIVPTQGSFSAKDFKLEISVLGRVD 233
N + + ++ LL++L+ KK +V + S +DF + +D
Sbjct: 150 YTNYI------------LVMLILVILLIVLWWFKKTMVYKNNNVS-RDFTMIFQRF--LD 194
Query: 234 ANHKIISIETNKERYLVLLSDKYGLLLDKISPKTSKEELIKEAENNIKN 282
N++++ + +RY +++ + +LL I + +E+ IK E KN
Sbjct: 195 KNNQLVVFDHANKRYTMIIGNS-NVLLGSI--EIPEEQTIKHTEKTEKN 240
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.132 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,956,761
Number of Sequences: 1026957
Number of extensions: 7204724
Number of successful extensions: 18306
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18304
Number of HSP's gapped (non-prelim): 4
length of query: 293
length of database: 324,149,939
effective HSP length: 120
effective length of query: 173
effective length of database: 200,915,099
effective search space: 34758312127
effective search space used: 34758312127
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 97 (42.0 bits)