BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645219|ref|NP_207389.1| hypothetical protein
[Helicobacter pylori 26695]
         (54 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207389.1|  (NC_000915) hypothetical protein [Helicoba...   107  2e-23
ref|NP_223259.1|  (NC_000921) putative [Helicobacter pylori ...   106  7e-23
ref|NP_281240.1|  (NC_002163) small hydrophobic protein [Cam...    57  4e-08

>ref|NP_207389.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64594 hypothetical protein HP0594 - Helicobacter pylori (strain 26695)
 gb|AAD07666.1| (AE000573) H. pylori predicted coding region HP0594 [Helicobacter
          pylori 26695]
          Length = 54

 Score =  107 bits (268), Expect = 2e-23
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1  MEFLGLILSLAAILIAFKKPEKENWAFGILMVVWLVELIIFIAHSSSVLPNMNL 54
          MEFLGLILSLAAILIAFKKPEKENWAFGILMVVWLVELIIFIAHSSSVLPNMNL
Sbjct: 1  MEFLGLILSLAAILIAFKKPEKENWAFGILMVVWLVELIIFIAHSSSVLPNMNL 54



>ref|NP_223259.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71920 hypothetical protein jhp0541 - Helicobacter pylori (strain J99)
 gb|AAD06113.1| (AE001486) putative [Helicobacter pylori J99]
          Length = 54

 Score =  106 bits (264), Expect = 7e-23
 Identities = 53/54 (98%), Positives = 54/54 (99%)

Query: 1  MEFLGLILSLAAILIAFKKPEKENWAFGILMVVWLVELIIFIAHSSSVLPNMNL 54
          MEFLGLILSLAAILIAFKKPEKENWAFGIL+VVWLVELIIFIAHSSSVLPNMNL
Sbjct: 1  MEFLGLILSLAAILIAFKKPEKENWAFGILIVVWLVELIIFIAHSSSVLPNMNL 54



>ref|NP_281240.1| (NC_002163) small hydrophobic protein [Campylobacter jejuni]
 pir||E81417 small hydrophobic protein Cj0018c [imported] - Campylobacter
          jejuni (strain NCTC 11168)
 emb|CAB72511.1| (AL139074) small hydrophobic protein [Campylobacter jejuni]
          Length = 55

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 1  MEFLGLILSLAAILIAFKKPEKENWAFGILMVVWLVELIIFIAH-SSSVLPNMNL 54
          MEFL L+L L A+++  KKPEKEN AFG++MV WL+ +  ++ H + ++L  MNL
Sbjct: 1  MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGHKTGALLTIMNL 55



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.330    0.143    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,994,924
Number of Sequences: 1026957
Number of extensions: 810495
Number of successful extensions: 2439
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2436
Number of HSP's gapped (non-prelim): 3
length of query: 54
length of database: 324,149,939
effective HSP length: 30
effective length of query: 24
effective length of database: 293,341,229
effective search space: 7040189496
effective search space used: 7040189496
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 91 (39.7 bits)