BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645220|ref|NP_207390.1| hypothetical protein
[Helicobacter pylori 26695]
(490 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207390.1| (NC_000915) hypothetical protein [Helicoba... 972 0.0
ref|NP_223260.1| (NC_000921) putative [Helicobacter pylori ... 920 0.0
emb|CAB56502.1| (AJ249744) putative membrane protein CjaE [... 326 3e-88
ref|NP_281239.1| (NC_002163) putative ATP /GTP binding prot... 320 2e-86
ref|NP_456367.1| (NC_003198) putative membrane protein [Sal... 52 2e-05
ref|NP_460820.1| (NC_003197) putative inner membrane protei... 52 2e-05
ref|NP_521760.1| (NC_003296) PROBABLE TRANSMEMBRANE PROTEIN... 45 0.001
>ref|NP_207390.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64594 hypothetical protein HP0595 - Helicobacter pylori (strain 26695)
gb|AAD07664.1| (AE000573) H. pylori predicted coding region HP0595 [Helicobacter
pylori 26695]
Length = 490
Score = 972 bits (2514), Expect = 0.0
Identities = 490/490 (100%), Positives = 490/490 (100%)
Query: 1 MDKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVV 60
MDKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVV
Sbjct: 1 MDKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVV 60
Query: 61 RFGFKPKYIALLLLMASSGLYESFYHTGSHALEDVGQGFALAILGLHTQFWALFVFFSVV 120
RFGFKPKYIALLLLMASSGLYESFYHTGSHALEDVGQGFALAILGLHTQFWALFVFFSVV
Sbjct: 61 RFGFKPKYIALLLLMASSGLYESFYHTGSHALEDVGQGFALAILGLHTQFWALFVFFSVV 120
Query: 121 VLLAVLLFFAPNAQPFKDHSLNALQKIAFYVFFMVVGSNAVQAFISTGPFPYIGQSDPVR 180
VLLAVLLFFAPNAQPFKDHSLNALQKIAFYVFFMVVGSNAVQAFISTGPFPYIGQSDPVR
Sbjct: 121 VLLAVLLFFAPNAQPFKDHSLNALQKIAFYVFFMVVGSNAVQAFISTGPFPYIGQSDPVR 180
Query: 181 FSWNLKESVWSMENWDHLKFPRSVLGRRDVGEPLKLSALPKDNDYERSPLEITKTLKIGK 240
FSWNLKESVWSMENWDHLKFPRSVLGRRDVGEPLKLSALPKDNDYERSPLEITKTLKIGK
Sbjct: 181 FSWNLKESVWSMENWDHLKFPRSVLGRRDVGEPLKLSALPKDNDYERSPLEITKTLKIGK 240
Query: 241 KEELFLKLNGAITDLSFNEDKAILTTENQGLYLVSNDLKTIHSHMVLDSYYSATVGSFVG 300
KEELFLKLNGAITDLSFNEDKAILTTENQGLYLVSNDLKTIHSHMVLDSYYSATVGSFVG
Sbjct: 241 KEELFLKLNGAITDLSFNEDKAILTTENQGLYLVSNDLKTIHSHMVLDSYYSATVGSFVG 300
Query: 301 ADFNEDENIVIMGNNKTSVEITPNKNANMLKNFPYFLEGVNSFDEVERSRLKTSRAKNYY 360
ADFNEDENIVIMGNNKTSVEITPNKNANMLKNFPYFLEGVNSFDEVERSRLKTSRAKNYY
Sbjct: 301 ADFNEDENIVIMGNNKTSVEITPNKNANMLKNFPYFLEGVNSFDEVERSRLKTSRAKNYY 360
Query: 361 VSVARRGAKFTYLISAPNKRYKDLIIISMRNSDKQVHGEFLLELGNAKLKEKRGLGELVI 420
VSVARRGAKFTYLISAPNKRYKDLIIISMRNSDKQVHGEFLLELGNAKLKEKRGLGELVI
Sbjct: 361 VSVARRGAKFTYLISAPNKRYKDLIIISMRNSDKQVHGEFLLELGNAKLKEKRGLGELVI 420
Query: 421 STLALKDNKLYAFSKEFNTLLVIDPTKEEILEVYGLPKEIKNISAGGFRNDELVLVSYEN 480
STLALKDNKLYAFSKEFNTLLVIDPTKEEILEVYGLPKEIKNISAGGFRNDELVLVSYEN
Sbjct: 421 STLALKDNKLYAFSKEFNTLLVIDPTKEEILEVYGLPKEIKNISAGGFRNDELVLVSYEN 480
Query: 481 NKNILYTLNF 490
NKNILYTLNF
Sbjct: 481 NKNILYTLNF 490
>ref|NP_223260.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71920 hypothetical protein jhp0542 - Helicobacter pylori (strain J99)
gb|AAD06114.1| (AE001486) putative [Helicobacter pylori J99]
Length = 490
Score = 920 bits (2379), Expect = 0.0
Identities = 460/490 (93%), Positives = 472/490 (95%)
Query: 1 MDKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVV 60
M+KETRFYNLFSLA+LGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVV
Sbjct: 1 MNKETRFYNLFSLAVLGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVV 60
Query: 61 RFGFKPKYIALLLLMASSGLYESFYHTGSHALEDVGQGFALAILGLHTQFWALFVFFSVV 120
RFGFKPKYIALLLLMASSGLYESFYHTGSHALEDVGQGFALAILGLHTQFWALFVFFSVV
Sbjct: 61 RFGFKPKYIALLLLMASSGLYESFYHTGSHALEDVGQGFALAILGLHTQFWALFVFFSVV 120
Query: 121 VLLAVLLFFAPNAQPFKDHSLNALQKIAFYVFFMVVGSNAVQAFISTGPFPYIGQSDPVR 180
LLAVLLFFAPNAQPFKD LN LQK AFYVFF+VVGSNAVQAF+STGPFPYIGQSDPVR
Sbjct: 121 ALLAVLLFFAPNAQPFKDRLLNTLQKSAFYVFFIVVGSNAVQAFVSTGPFPYIGQSDPVR 180
Query: 181 FSWNLKESVWSMENWDHLKFPRSVLGRRDVGEPLKLSALPKDNDYERSPLEITKTLKIGK 240
FSWNLKESVWSMENWDHLKFPRSVLGRRDVGEPLKLSALPKDNDYE SPLEI K LKIGK
Sbjct: 181 FSWNLKESVWSMENWDHLKFPRSVLGRRDVGEPLKLSALPKDNDYEHSPLEIAKILKIGK 240
Query: 241 KEELFLKLNGAITDLSFNEDKAILTTENQGLYLVSNDLKTIHSHMVLDSYYSATVGSFVG 300
KEEL LKLNGAITDL+FNEDKAILTTENQGLYLV NDLKTIHS+MVLDSYYSATVG+FVG
Sbjct: 241 KEELPLKLNGAITDLNFNEDKAILTTENQGLYLVGNDLKTIHSYMVLDSYYSATVGAFVG 300
Query: 301 ADFNEDENIVIMGNNKTSVEITPNKNANMLKNFPYFLEGVNSFDEVERSRLKTSRAKNYY 360
ADFNEDENIVIMGNNKTSVEITPNKNAN LKNFPYFLEG +SFDEVERSRLKTSRAKNYY
Sbjct: 301 ADFNEDENIVIMGNNKTSVEITPNKNANALKNFPYFLEGADSFDEVERSRLKTSRAKNYY 360
Query: 361 VSVARRGAKFTYLISAPNKRYKDLIIISMRNSDKQVHGEFLLELGNAKLKEKRGLGELVI 420
+S ARRG KFTYLI+APNK YKDL+IISM NSDKQVHGEFLLELGNAKLKEKRGLGELVI
Sbjct: 361 ISAARRGTKFTYLITAPNKHYKDLMIISMLNSDKQVHGEFLLELGNAKLKEKRGLGELVI 420
Query: 421 STLALKDNKLYAFSKEFNTLLVIDPTKEEILEVYGLPKEIKNISAGGFRNDELVLVSYEN 480
S L LKDNKLYAFSKEFNTLLVIDPTKEEILEVYGLPKEIKNISAGGF+NDELVLVSYEN
Sbjct: 421 SALVLKDNKLYAFSKEFNTLLVIDPTKEEILEVYGLPKEIKNISAGGFKNDELVLVSYEN 480
Query: 481 NKNILYTLNF 490
NKNILYTLNF
Sbjct: 481 NKNILYTLNF 490
>emb|CAB56502.1| (AJ249744) putative membrane protein CjaE [Campylobacter jejuni]
Length = 505
Score = 326 bits (836), Expect = 3e-88
Identities = 196/510 (38%), Positives = 287/510 (55%), Gaps = 29/510 (5%)
Query: 1 MDKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVV 60
++K FY L LA I++ PVG+ANF FGY+L DSPC CW QR MI IG +AL +V
Sbjct: 4 INKTKNFYTLMCLAGFLIILLPVGIANFVFGYMLGDSPCTLCWGQREAMIFIGVIALFIV 63
Query: 61 RFGFKPKYIALLLLMASSGLYESFYHTGSHALEDVGQGFALAILGLHTQFWALFVFFSVV 120
R+G K KY+A LL+M + GLY+SF H G+HA D+ QGF LA+ G+HT FWA VF++VV
Sbjct: 64 RYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGFGLAVFGIHTYFWAEVVFWAVV 123
Query: 121 VLLAVLLFFAPNAQPFKDHSLNA-----LQKIAF---YVFFMVVGSNAVQAFISTGPFPY 172
+LL V+ FAP F D LN K +F + ++V SN QAF+STG PY
Sbjct: 124 LLLGVMFAFAPKFGSF-DKELNGEKFRKFTKFSFAAVLISTLIVASNVFQAFVSTGIPPY 182
Query: 173 IGQSDPVRFSWNLKESVWSMENWDHLKFPRSVLGRRDVGEP-------LKLSALPKDNDY 225
+GQ DPVRFS N K +WS E W+ L S LG+RDV P + + DN+
Sbjct: 183 VGQGDPVRFSLNPKYIIWSTEGWNGLWQNISFLGKRDVKAPDYAFAPASEKLGIKFDNNT 242
Query: 226 ERSPL-EITKTLKIGKKEELFLKLNGAITDLSFNEDKAILTTENQGLYLVSNDLKTIHSH 284
SP EI LKI E + + AI L + D+ + +++ +L +N ++
Sbjct: 243 NNSPFAEIDDELKI--INEQTINFDKAINTLDYINDEFVASSKWDVAFLDNN--FSVKEG 298
Query: 285 MVLDSYYSATVGSFVGADFNEDENIVIMGNNKTSVEITPNKNANMLKNFPYFLEGVNSFD 344
LD Y+SAT+ +G ++ ++MG+NK+ + N NA+ + F++G + F+
Sbjct: 299 FELDPYFSATIDPIIGIIPYKENKFLLMGSNKSFLRFAKNPNADETLQYADFIKGNDKFE 358
Query: 345 ----EVERSRLKTSRAKNYYVSVARRGAKFTYLISAP-NKRYKDLIIISMRNSDKQVHGE 399
++ R RL T RAK +V+ + YL + P NK K +I + D + E
Sbjct: 359 GQGKDLGRGRLDTVRAKFNHVASMTTDDHYLYLATVPNNKNSKSFVISKISLKDLVLSAE 418
Query: 400 FLLELGNAKLKEKRGLGELVISTLALKDNKLYAFSKEFNTLLVIDPTKEEILEVYGLPKE 459
F A+LKE + LG+L I+++ KD ++YA SK N + VIDP KEE+++ P
Sbjct: 419 F---TPKAELKEGKTLGDLYITSMTFKDGEIYALSKNHNVIAVIDPVKEEVVKTIAFPSS 475
Query: 460 IKNISAGGFRNDELVLVSYENNKNILYTLN 489
I N + F++ ++ ++SY++ N LYTLN
Sbjct: 476 ITNARSIFFKDGKINILSYQDGANKLYTLN 505
>ref|NP_281239.1| (NC_002163) putative ATP /GTP binding protein [Campylobacter
jejuni]
pir||D81417 probable ATP /GTP binding protein Cj0017c [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB72510.1| (AL139074) putative ATP /GTP binding protein [Campylobacter jejuni]
Length = 508
Score = 320 bits (820), Expect = 2e-86
Identities = 190/512 (37%), Positives = 284/512 (55%), Gaps = 30/512 (5%)
Query: 1 MDKETRFYNLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVV 60
++K FY L LA I++ PVG+AN FGY+L DSPC CW QR MI IG +AL +V
Sbjct: 4 INKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTLCWGQREAMIFIGVMALFIV 63
Query: 61 RFGFKPKYIALLLLMASSGLYESFYHTGSHALEDVGQGFALAILGLHTQFWALFVFFSVV 120
R+G K KY+A LL+M + GLY+SF H G+HA D+ QGF LA+ G+HT FWA VF++VV
Sbjct: 64 RYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGFGLAVFGIHTYFWAEVVFWAVV 123
Query: 121 VLLAVLLFFAPNAQPF-------KDHSLNALQKIAFYVFFMVVGSNAVQAFISTGPFPYI 173
+LL V+ FAP F K A + ++V SN QAF+STG PY+
Sbjct: 124 LLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVLISAIIVASNVFQAFVSTGIPPYV 183
Query: 174 GQSDPVRFSWNLKESVWSMENWDHLKFPRSVLGRRDVGEP-------LKLSALPKDNDYE 226
GQ DPVRFS N K +WS E W+ L S LG+RDV P + + DND
Sbjct: 184 GQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKRDVKAPDYAFAPASEKLGIKFDNDIN 243
Query: 227 RSPL-EITKTLKIGKKEELFLKLNGAITDLSFNEDKAILTTENQGLYLVSNDLKTIHSHM 285
+P +I LKI E + + AI L + ++ + +++ +L +N ++
Sbjct: 244 NAPFAKINDELKI--TNEQTINFDKAINTLDYINNEFVASSKWDVAFLDNN--FSVKEGF 299
Query: 286 VLDSYYSATVGSFVGADFNEDENIVIMGNNKTSVEITPNKNA---NMLKNFPYFLEGVNS 342
LD Y+SA++ +G ++ ++MG+NK+ + N NA ++ K + F++G +
Sbjct: 300 ELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLRFAKNPNASEEDIAKQYADFVKGNDK 359
Query: 343 F----DEVERSRLKTSRAKNYYVSVARRGAKFTYLISAP-NKRYKDLIIISMRNSDKQVH 397
F + + R RL T RAK +V+ + YL + P NK K +I + D+ +
Sbjct: 360 FKGQGESLGRGRLDTVRAKFNHVASMTTDGNYLYLATVPNNKDAKTFVISKVSLKDRVLS 419
Query: 398 GEFLLELGNAKLKEKRGLGELVISTLALKDNKLYAFSKEFNTLLVIDPTKEEILEVYGLP 457
GEF A LKE + LG+L ++++ KD ++YA SK N + VIDP KEE+++ P
Sbjct: 420 GEF---TPKANLKEGKTLGDLYVTSMTFKDGEIYALSKNHNVIAVIDPVKEEVVKTIAFP 476
Query: 458 KEIKNISAGGFRNDELVLVSYENNKNILYTLN 489
I N + F++ ++ ++SY++ N LYTLN
Sbjct: 477 SSITNARSIFFKDGKINILSYQDGANKLYTLN 508
>ref|NP_456367.1| (NC_003198) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD05546.1| (AL627272) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 204
Score = 52.0 bits (123), Expect = 2e-05
Identities = 39/166 (23%), Positives = 75/166 (44%), Gaps = 5/166 (3%)
Query: 5 TRFYNLFS-LAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVVRFG 63
T F +L + + +LGI + V FY+ V + PC C QR +I+ G L + FG
Sbjct: 8 TTFVHLINQIGLLGICVALV--VAFYYQLVRHELPCPICLLQRAGLIIAGFGFLFNLCFG 65
Query: 64 FKPKYIALLLLMASSGLYESFYHTGSHALEDVGQGFALAILGLHTQFWALFVFFSVVVLL 123
+ + ++++ + + H + G+ A GLH W L +++ +
Sbjct: 66 LRGIHYGMVIIGSILTGVMASRQICLHIMPG-DTGYGSAFFGLHFYTWTLITSILIIIAV 124
Query: 124 AVLLFFAPNAQPFKDHSLNA-LQKIAFYVFFMVVGSNAVQAFISTG 168
AV+L + F+ ++N L I +VF +++ +N + + G
Sbjct: 125 AVVLAISSMNAAFRSLNINPNLFSIVGWVFLLLITANLISTVLECG 170
>ref|NP_460820.1| (NC_003197) putative inner membrane protein [Salmonella typhimurium
LT2]
gb|AAL20779.1| (AE008783) putative inner membrane protein [Salmonella typhimurium
LT2]
Length = 204
Score = 51.6 bits (122), Expect = 2e-05
Identities = 39/166 (23%), Positives = 75/166 (44%), Gaps = 5/166 (3%)
Query: 5 TRFYNLFS-LAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRINMILIGAVALLVVRFG 63
T F +L + + +LGI + V FY+ V + PC C QR +I+ G L + FG
Sbjct: 8 TTFVHLINQVGLLGICVALV--VAFYYQLVRHELPCPICLLQRAGLIIAGFGFLFNLCFG 65
Query: 64 FKPKYIALLLLMASSGLYESFYHTGSHALEDVGQGFALAILGLHTQFWALFVFFSVVVLL 123
+ + ++++ + + H + G+ A GLH W L +++ +
Sbjct: 66 LRGIHYGMVIIGSILTGVMASRQICLHIMPG-DTGYGSAFFGLHFYTWTLITSILIIIAV 124
Query: 124 AVLLFFAPNAQPFKDHSLNA-LQKIAFYVFFMVVGSNAVQAFISTG 168
AV+L + F+ ++N L I +VF +++ +N + + G
Sbjct: 125 AVILAISSMNVAFRSLNINPDLFSIVGWVFLLLITANLISTVLECG 170
>ref|NP_521760.1| (NC_003296) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
emb|CAD17350.1| (AL646077) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
Length = 184
Score = 45.4 bits (106), Expect = 0.001
Identities = 39/145 (26%), Positives = 61/145 (41%), Gaps = 5/145 (3%)
Query: 28 FYFGYVLKDSPCIFCWAQRINMILIGAVALLVVRFGFKPKYIALLLLMASSGLYESFYHT 87
F VL D PC C QR I G L +RFG +P + AL++L + +G +
Sbjct: 25 FVHQIVLHDLPCPLCLLQRGCFIAAGVGLALNLRFGARPAHYALMILASLAGAAIAGRQI 84
Query: 88 GSHALEDVGQGFALAILGLHTQFWALFVFFSVVVLLAVLLFF--APNAQ--PFKDHSLNA 143
H + G + A+ GLH A F ++ A+LL +P A P K ++
Sbjct: 85 LLHIVPGTGT-YGEALWGLHLYTLAFIAFAVMIAGTAILLLLERSPEADEGPAKRAPMSR 143
Query: 144 LQKIAFYVFFMVVGSNAVQAFISTG 168
A + ++ N + F+ G
Sbjct: 144 AALAAVALLTVLTLGNVLGTFLECG 168
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.140 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,126,584
Number of Sequences: 1026957
Number of extensions: 13446822
Number of successful extensions: 32524
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 32510
Number of HSP's gapped (non-prelim): 7
length of query: 490
length of database: 324,149,939
effective HSP length: 125
effective length of query: 365
effective length of database: 195,780,314
effective search space: 71459814610
effective search space used: 71459814610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 99 (42.7 bits)