BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645221|ref|NP_207391.1| hypothetical protein
[Helicobacter pylori 26695]
(192 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207391.1| (NC_000915) hypothetical protein [Helicoba... 379 e-105
ref|NP_223261.1| (NC_000921) putative [Helicobacter pylori ... 362 1e-99
>ref|NP_207391.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64594 hypothetical protein HP0596 - Helicobacter pylori (strain 26695)
gb|AAD07665.1| (AE000573) H. pylori predicted coding region HP0596 [Helicobacter
pylori 26695]
Length = 192
Score = 379 bits (974), Expect = e-105
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MLEKSFLKSKQLFLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSH 60
MLEKSFLKSKQLFLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSH
Sbjct: 1 MLEKSFLKSKQLFLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSH 60
Query: 61 IVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMFIQMTQPIYDS 120
IVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMFIQMTQPIYDS
Sbjct: 61 IVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMFIQMTQPIYDS 120
Query: 121 LMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDS 180
LMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDS
Sbjct: 121 LMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDS 180
Query: 181 VNYGDVKVPIAM 192
VNYGDVKVPIAM
Sbjct: 181 VNYGDVKVPIAM 192
>ref|NP_223261.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71917 hypothetical protein jhp0543 - Helicobacter pylori (strain J99)
gb|AAD06128.1| (AE001487) putative [Helicobacter pylori J99]
Length = 192
Score = 362 bits (929), Expect = 1e-99
Identities = 181/192 (94%), Positives = 189/192 (98%)
Query: 1 MLEKSFLKSKQLFLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSEYITQGVDSSH 60
MLEKSFLKSKQL LCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRS+Y+TQGVDSSH
Sbjct: 1 MLEKSFLKSKQLVLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSQYLTQGVDSSH 60
Query: 61 IVDGKKTEEIEKIATKRATIRVAQNIVHKLKEAYLSKTNRIKQKITNEMFIQMTQPIYDS 120
IVDGK TEEIEKIATKRATIRVAQNIVHKLKEAYLSK+NRIKQKITNEMFIQMT+PI+DS
Sbjct: 61 IVDGKATEEIEKIATKRATIRVAQNIVHKLKEAYLSKSNRIKQKITNEMFIQMTKPIFDS 120
Query: 121 LMNVDRLGIYINPNNEEVFALVRARGFDKDALSEGLHKMSLDNQAVSILVAKVEEIFKDS 180
LMNVDRLGIYINPNNEEVFALVRAR FDKDALSEGLHKMSLD+QAVSILV+KVEEIFKDS
Sbjct: 121 LMNVDRLGIYINPNNEEVFALVRARSFDKDALSEGLHKMSLDDQAVSILVSKVEEIFKDS 180
Query: 181 VNYGDVKVPIAM 192
+NYGDVKVPIAM
Sbjct: 181 INYGDVKVPIAM 192
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,541,937
Number of Sequences: 1026957
Number of extensions: 3897194
Number of successful extensions: 11835
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11833
Number of HSP's gapped (non-prelim): 2
length of query: 192
length of database: 324,149,939
effective HSP length: 114
effective length of query: 78
effective length of database: 207,076,841
effective search space: 16151993598
effective search space used: 16151993598
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)