BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644691|ref|NP_206861.1| hypothetical protein
[Helicobacter pylori 26695]
(189 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206861.1| (NC_000915) hypothetical protein [Helicoba... 382 e-106
ref|NP_222778.1| (NC_000921) putative [Helicobacter pylori ... 325 2e-88
>ref|NP_206861.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64527 hypothetical protein HP0061 - Helicobacter pylori (strain 26695)
gb|AAD07138.1| (AE000528) H. pylori predicted coding region HP0061 [Helicobacter
pylori 26695]
Length = 189
Score = 382 bits (982), Expect = e-106
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MMTKNAYAFVVIEESVMVFKRTKDEGLMPIFEGFVPLKEGFLKSFKERCNLEFLENLDLL 60
MMTKNAYAFVVIEESVMVFKRTKDEGLMPIFEGFVPLKEGFLKSFKERCNLEFLENLDLL
Sbjct: 1 MMTKNAYAFVVIEESVMVFKRTKDEGLMPIFEGFVPLKEGFLKSFKERCNLEFLENLDLL 60
Query: 61 FLYDKPSAHEIFSLCKELKNSIWDRKLVVALVEALEGFKDWNLSLKIEDKRSNSLGNGTK 120
FLYDKPSAHEIFSLCKELKNSIWDRKLVVALVEALEGFKDWNLSLKIEDKRSNSLGNGTK
Sbjct: 61 FLYDKPSAHEIFSLCKELKNSIWDRKLVVALVEALEGFKDWNLSLKIEDKRSNSLGNGTK 120
Query: 121 KLLTNADLGSDYKTIVIDSMKTYHQSQQEKYKRERGETLEVRPTTPPSYGGGSIRISGDK 180
KLLTNADLGSDYKTIVIDSMKTYHQSQQEKYKRERGETLEVRPTTPPSYGGGSIRISGDK
Sbjct: 121 KLLTNADLGSDYKTIVIDSMKTYHQSQQEKYKRERGETLEVRPTTPPSYGGGSIRISGDK 180
Query: 181 KPDFDEENF 189
KPDFDEENF
Sbjct: 181 KPDFDEENF 189
>ref|NP_222778.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71978 hypothetical protein jhp0056 - Helicobacter pylori (strain J99)
gb|AAD05640.1| (AE001445) putative [Helicobacter pylori J99]
Length = 189
Score = 325 bits (833), Expect = 2e-88
Identities = 161/189 (85%), Positives = 174/189 (91%)
Query: 1 MMTKNAYAFVVIEESVMVFKRTKDEGLMPIFEGFVPLKEGFLKSFKERCNLEFLENLDLL 60
MMTKNAYAFVVIE+S+MVFK KD+GL+PI EGFVPLKEGFL+SFKERCNL+FLENLDLL
Sbjct: 1 MMTKNAYAFVVIEKSIMVFKCAKDKGLIPITEGFVPLKEGFLRSFKERCNLDFLENLDLL 60
Query: 61 FLYDKPSAHEIFSLCKELKNSIWDRKLVVALVEALEGFKDWNLSLKIEDKRSNSLGNGTK 120
FLYD E+FSLCK+LKNSIWDRKLVV LVEALEGFK NLSLKIED+ SNSLGNG +
Sbjct: 61 FLYDYQFPSEVFSLCKDLKNSIWDRKLVVVLVEALEGFKGLNLSLKIEDRHSNSLGNGVQ 120
Query: 121 KLLTNADLGSDYKTIVIDSMKTYHQSQQEKYKRERGETLEVRPTTPPSYGGGSIRISGDK 180
KLLTNADLGS++K IVIDSMKTYHQSQQEKYKRERGETLEVRPTTPPSYGGGSIRISGDK
Sbjct: 121 KLLTNADLGSNHKPIVIDSMKTYHQSQQEKYKRERGETLEVRPTTPPSYGGGSIRISGDK 180
Query: 181 KPDFDEENF 189
KPD +EENF
Sbjct: 181 KPDSNEENF 189
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.316 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,756,627
Number of Sequences: 1026957
Number of extensions: 5171421
Number of successful extensions: 13173
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13171
Number of HSP's gapped (non-prelim): 2
length of query: 189
length of database: 324,149,939
effective HSP length: 114
effective length of query: 75
effective length of database: 207,076,841
effective search space: 15530763075
effective search space used: 15530763075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 94 (40.8 bits)