BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645228|ref|NP_207398.1| hypothetical protein
[Helicobacter pylori 26695]
(189 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207398.1| (NC_000915) hypothetical protein [Helicoba... 388 e-107
ref|NP_223268.1| (NC_000921) putative [Helicobacter pylori ... 374 e-103
>ref|NP_207398.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64595 hypothetical protein HP0603 - Helicobacter pylori (strain 26695)
gb|AAD07672.1| (AE000574) H. pylori predicted coding region HP0603 [Helicobacter
pylori 26695]
Length = 189
Score = 388 bits (997), Expect = e-107
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MAKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKTYHDASLGF 60
MAKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKTYHDASLGF
Sbjct: 1 MAKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKTYHDASLGF 60
Query: 61 QVGFVLKKKALLGGYLDAGMGDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDK 120
QVGFVLKKKALLGGYLDAGMGDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDK
Sbjct: 61 QVGFVLKKKALLGGYLDAGMGDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDK 120
Query: 121 YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSRFSKAFGTPRLNIYSVGITFT 180
YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSRFSKAFGTPRLNIYSVGITFT
Sbjct: 121 YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSRFSKAFGTPRLNIYSVGITFT 180
Query: 181 FYDFTRFLG 189
FYDFTRFLG
Sbjct: 181 FYDFTRFLG 189
>ref|NP_223268.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71918 hypothetical protein jhp0550 - Helicobacter pylori (strain J99)
gb|AAD06122.1| (AE001487) putative [Helicobacter pylori J99]
Length = 205
Score = 374 bits (960), Expect = e-103
Identities = 181/189 (95%), Positives = 184/189 (96%)
Query: 1 MAKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKTYHDASLGF 60
+AKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKR PIRPKNRPPILMDK YHDASLGF
Sbjct: 17 LAKKDWNFFKPLEPTKKYFGSFKIGYLYQHAETTKRFPIRPKNRPPILMDKIYHDASLGF 76
Query: 61 QVGFVLKKKALLGGYLDAGMGDSYFMSAGFMAGVRLFKGWVIPKIALGYQLQILGAKIDK 120
G+VLKKKALLGGYLDAGMGDSYFMSAG +AGVRLFKGWVIPKIALGYQLQILGAKIDK
Sbjct: 77 DAGYVLKKKALLGGYLDAGMGDSYFMSAGLVAGVRLFKGWVIPKIALGYQLQILGAKIDK 136
Query: 121 YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSRFSKAFGTPRLNIYSVGITFT 180
YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSRFSKAFGTPRLNIYSVGITFT
Sbjct: 137 YQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSRFSKAFGTPRLNIYSVGITFT 196
Query: 181 FYDFTRFLG 189
FYDFTRFLG
Sbjct: 197 FYDFTRFLG 205
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.326 0.145 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,693,471
Number of Sequences: 1026957
Number of extensions: 5129848
Number of successful extensions: 10933
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10931
Number of HSP's gapped (non-prelim): 2
length of query: 189
length of database: 324,149,939
effective HSP length: 114
effective length of query: 75
effective length of database: 207,076,841
effective search space: 15530763075
effective search space used: 15530763075
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 94 (40.8 bits)