BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645230|ref|NP_207400.1| hypothetical protein
[Helicobacter pylori 26695]
(477 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207400.1| (NC_000915) hypothetical protein [Helicoba... 938 0.0
gb|AAC14432.1| (AF059041) putative outer membrane pore prot... 928 0.0
ref|NP_223270.1| (NC_000921) putative [Helicobacter pylori ... 925 0.0
ref|NP_282181.1| (NC_002163) putative outer membrane compon... 126 6e-28
ref|NP_662234.1| (NC_002932) outer membrane efflux protein,... 65 1e-09
gb|AAL11914.1|AF421372_1 (AF421372) outer membrane protein ... 55 2e-06
ref|NP_661013.1| (NC_002932) outer membrane protein, putati... 54 5e-06
pdb|1EK9|A Chain A, 2.1a X-Ray Structure Of Tolc: An Integr... 52 1e-05
sp|P02930|TOLC_ECOLI Outer membrane protein tolC precursor ... 50 4e-05
ref|NP_417507.1| (NC_000913) outer membrane channel; specif... 50 6e-05
ref|NP_289615.1| (NC_002655) outer membrane channel; specif... 50 6e-05
ref|NP_232066.1| (NC_002505) outer membrane protein TolC [V... 49 1e-04
ref|NP_539946.1| (NC_003317) OUTER MEMBRANE PROTEIN TOLC [B... 49 1e-04
gb|AAD51072.1|AF175719_1 (AF175719) immunoreactive 51kD ant... 49 2e-04
gb|AAC97166.1| (AF027405) SapF [Campylobacter fetus] >gi|40... 48 2e-04
pir||S30782 integrin homolog - yeast (Saccharomyces cerevis... 45 0.001
gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae] 45 0.001
ref|NP_213478.1| (NC_000918) hypothetical protein [Aquifex ... 45 0.001
ref|NP_010225.1| (NC_001136) involved intracellular protein... 45 0.002
sp|P25386|USO1_YEAST Intracellular protein transport protei... 45 0.002
pir||T18296 myosin heavy chain - Entamoeba histolytica >gi|... 45 0.002
emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevis... 45 0.002
ref|NP_223965.1| (NC_000921) putative [Helicobacter pylori ... 44 0.003
gb|AAC33452.1| (AF064762) ZapD [Proteus mirabilis] 44 0.003
sp|Q54001|TOLC_SALEN OUTER MEMBRANE PROTEIN TOLC PRECURSOR ... 44 0.004
ref|NP_604170.1| (NC_003454) Outer membrane protein tolC [F... 44 0.004
ref|NP_309892.1| (NC_002695) putative outer membrane channe... 44 0.005
ref|NP_385620.1| (NC_003047) PUTATIVE OUTER MEMBRANE SECRET... 43 0.007
ref|NP_208119.1| (NC_000915) hypothetical protein [Helicoba... 43 0.009
>ref|NP_207400.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64595 hypothetical protein HP0605 - Helicobacter pylori (strain 26695)
gb|AAD07673.1| (AE000574) H. pylori predicted coding region HP0605 [Helicobacter
pylori 26695]
Length = 477
Score = 938 bits (2425), Expect = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%)
Query: 1 MNTIIRYASLWGLCAALTLAQTPSKTPDEIKQILNNYSHKNLKLIDPPTSSLEATPSFLS 60
MNTIIRYASLWGLCAALTLAQTPSKTPDEIKQILNNYSHKNLKLIDPPTSSLEATPSFLS
Sbjct: 1 MNTIIRYASLWGLCAALTLAQTPSKTPDEIKQILNNYSHKNLKLIDPPTSSLEATPSFLS 60
Query: 61 SPKETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAM 120
SPKETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAM
Sbjct: 61 SPKETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAM 120
Query: 121 FLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVAN 180
FLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVAN
Sbjct: 121 FLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVAN 180
Query: 181 LEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSL 240
LEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSL
Sbjct: 181 LEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSL 240
Query: 241 KAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQ 300
KAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQ
Sbjct: 241 KAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQ 300
Query: 301 ISAIRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQNTAGVTATLNIFDDI 360
ISAIRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQNTAGVTATLNIFDDI
Sbjct: 301 ISAIRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQNTAGVTATLNIFDDI 360
Query: 361 GLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFA 420
GLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFA
Sbjct: 361 GLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFA 420
Query: 421 NIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH 477
NIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH
Sbjct: 421 NIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH 477
>gb|AAC14432.1| (AF059041) putative outer membrane pore protein [Helicobacter
pylori]
Length = 477
Score = 928 bits (2399), Expect = 0.0
Identities = 472/477 (98%), Positives = 475/477 (98%)
Query: 1 MNTIIRYASLWGLCAALTLAQTPSKTPDEIKQILNNYSHKNLKLIDPPTSSLEATPSFLS 60
MNTIIRYASLWGLCAALTLAQTPSKTPDEIKQI+NNYSHKNL LIDPPTSSLEATPSFLS
Sbjct: 1 MNTIIRYASLWGLCAALTLAQTPSKTPDEIKQIVNNYSHKNLILIDPPTSSLEATPSFLS 60
Query: 61 SPKETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAM 120
S KETATT+NQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAM
Sbjct: 61 SHKETATTVNQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAM 120
Query: 121 FLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVAN 180
FLPTLNASYNFKNEARDTPEYKHY+TQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVAN
Sbjct: 121 FLPTLNASYNFKNEARDTPEYKHYDTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVAN 180
Query: 181 LEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSL 240
LEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSL
Sbjct: 181 LEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSL 240
Query: 241 KAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQ 300
KAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQ
Sbjct: 241 KAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQ 300
Query: 301 ISAIRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQNTAGVTATLNIFDDI 360
ISAIRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQNTAGVTATLNIFDDI
Sbjct: 301 ISAIRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQNTAGVTATLNIFDDI 360
Query: 361 GLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFA 420
GLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFA
Sbjct: 361 GLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFA 420
Query: 421 NIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH 477
NIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH
Sbjct: 421 NIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH 477
>ref|NP_223270.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71918 hypothetical protein jhp0552 - Helicobacter pylori (strain J99)
gb|AAD06124.1| (AE001487) putative [Helicobacter pylori J99]
Length = 477
Score = 925 bits (2390), Expect = 0.0
Identities = 469/477 (98%), Positives = 472/477 (98%)
Query: 1 MNTIIRYASLWGLCAALTLAQTPSKTPDEIKQILNNYSHKNLKLIDPPTSSLEATPSFLS 60
MNTIIRYASLWGLC LTLAQTPSKTPDEIKQILNNYSHKNLKLIDPPTSSLEATP FL
Sbjct: 1 MNTIIRYASLWGLCITLTLAQTPSKTPDEIKQILNNYSHKNLKLIDPPTSSLEATPGFLP 60
Query: 61 SPKETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAM 120
SPKETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAM
Sbjct: 61 SPKETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAM 120
Query: 121 FLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVAN 180
FLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFS+VNNVKEKSATYRS VAN
Sbjct: 121 FLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSNVNNVKEKSATYRSTVAN 180
Query: 181 LEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSL 240
LEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQI+TDIKRVTKLYDKGLTTIDDLQSL
Sbjct: 181 LEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIQTDIKRVTKLYDKGLTTIDDLQSL 240
Query: 241 KAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQ 300
KAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQ
Sbjct: 241 KAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQ 300
Query: 301 ISAIRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQNTAGVTATLNIFDDI 360
ISA+RYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQNTAGVTATLNIFDDI
Sbjct: 301 ISALRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQNTAGVTATLNIFDDI 360
Query: 361 GLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFA 420
GLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFA
Sbjct: 361 GLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFA 420
Query: 421 NIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH 477
NIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH
Sbjct: 421 NIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH 477
>ref|NP_282181.1| (NC_002163) putative outer membrane component of efflux system
[Campylobacter jejuni]
pir||D81305 probable outer membrane component of efflux system Cj1031
[imported] - Campylobacter jejuni (strain NCTC 11168)
emb|CAB73287.1| (AL139077) putative outer membrane component of efflux system
[Campylobacter jejuni]
Length = 424
Score = 126 bits (316), Expect = 6e-28
Identities = 100/408 (24%), Positives = 206/408 (49%), Gaps = 21/408 (5%)
Query: 84 ALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTL--NASYNFKNEARDTPEY 141
A L+E + + N S +++ +QA + A +LP+L N++Y N+ R +
Sbjct: 21 ASNLHEFIALSQNNESYLIKQMQSEQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDP 80
Query: 142 KHYNTQQLQAQVTLN--VFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEY 199
+ + L A+V+LN +F+G + N++ + + ++ + E ++ + L + Y+
Sbjct: 81 Q----ESLFAKVSLNFLLFDGGAREANLRALESREKLSLLDKEQNKNYLALNAITLYFNT 136
Query: 200 FNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALE 259
+ ++A Q+K+ +K+ +R+ K YD GL+ D+L+S+KA+ +LS ++ + L
Sbjct: 137 LSLEKILLANQQKVSFLKSTFERLQKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLA 196
Query: 260 QNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQISAIRYQNK--QLNYYPKI 317
+ ++ L++ K ++ P + + +++ +EQI+ + + Y+PK
Sbjct: 197 NIQKEIKILSDTDFKVQGNAFLENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKF 256
Query: 318 DVFDSWLFWIQK-----PA----YATGRFGNFYPGQQNTAGVTATLNIFDDIGLSLQKQS 368
+ D++ F+ PA A + G Q G+ + F+ ++K+
Sbjct: 257 YIQDNFNFYKNNYNPKVPAPFANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKER 316
Query: 369 IMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFANIKRKYDA 428
+ + Q+AN N + + + +++ KSL + + +I + SL+AANL+F ++ +KY A
Sbjct: 317 LNV-QIANA-NARFSERKNKEELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQA 374
Query: 429 NLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYV 476
LV + YL+ L +F A+ LA N +E+ KANY FN+G ++ V
Sbjct: 375 GLVSYVEYLQALEVKFKAQSDLELAKNEFEITKANYYFNAGIDLNSKV 422
>ref|NP_662234.1| (NC_002932) outer membrane efflux protein, putative [Chlorobium
tepidum TLS]
gb|AAM72576.1| (AE012893) outer membrane efflux protein, putative [Chlorobium
tepidum TLS]
Length = 473
Score = 65.5 bits (158), Expect = 1e-09
Identities = 77/366 (21%), Positives = 153/366 (41%), Gaps = 43/366 (11%)
Query: 145 NTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLA 204
+T + +LN+FNG SD ++ ++ L+ +++++ V Q YY+ +
Sbjct: 108 STVDMSLTASLNLFNGLSDYAALQAALDRKKAAGFTLQRAKETIAYDVTQHYYQVLLDKE 167
Query: 205 RMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQNRL- 263
+ ++ L+ + + + ++ GL +I DL +A+ + S +++ + L +++L
Sbjct: 168 LLDIARENLKTSRDLLTLTERQFNIGLKSITDLYQQQAEASNSNLAVINAENQLRRSKLE 227
Query: 264 -------------TLEYLTNLSVKNLKKTTIDAPNLQ---LRERQDLVSLREQISAIRYQ 307
LE + +++ L +D L L++R DL + + A R
Sbjct: 228 LVRRLRIDPAEEIALEPVDTAAIEKLSPE-VDIAALSAASLQQRADLKAQGLERDAARQD 286
Query: 308 NKQL--NYYPKIDVFDSWLFWIQKPA---YATGRFGNFYP------------GQQNTAGV 350
+Q+ + P++D+ F + A Y T G Y G + +
Sbjct: 287 VRQVAGSRLPRLDL----AFTMSSGAIDSYKTTMLGQTYDYAYPSVSKQLKNGIDHAVSL 342
Query: 351 TATLNIFDDIGLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARA--KIESS 408
+ IFD +S + ++ + L Y++L+ + L + + D A +IES+
Sbjct: 343 NLSWTIFDGFSTRYNVESAKV--VSRNRQLDYEELKDGIEIDLKQVAGDYQAAFTRIESA 400
Query: 409 KASLDAANLSFANIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNS 468
K SL A+ + I RKYD +F F A A+ N +QKA + S
Sbjct: 401 KKSLKASESAAQGITRKYDLGASNFVELSSARAALFSARSTLTQAIYNLALQKALLDYTS 460
Query: 469 GHKIDD 474
G I++
Sbjct: 461 GVGIEE 466
>gb|AAL11914.1|AF421372_1 (AF421372) outer membrane protein [Pectobacterium chrysanthemi]
[Erwinia chrysanthemi]
Length = 472
Score = 54.7 bits (130), Expect = 2e-06
Identities = 81/405 (20%), Positives = 167/405 (41%), Gaps = 37/405 (9%)
Query: 85 LGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLN--ASYNFKNEARDTPEYK 142
L +Y+ K TTN L++ + A + A++ LP L A Y + + RD +
Sbjct: 28 LQVYQQAK--TTNPDLRSAAATRDAAFEKINEARSSLLPQLGLGADYTYNSGYRDRKDIN 85
Query: 143 HYNTQQLQAQVTLNVFN-GFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFN 201
N Q+T ++FN ++EK A + + + S+Q++ L Y+
Sbjct: 86 S-NATSASLQLTQSIFNMSLWRALTLQEKQAGIQD--VSYQTSQQTLLLNTATAYFNVLR 142
Query: 202 NLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQN 261
+ + + + + I ++ + T+ ++ GL I D+Q+ +AQ + + + L+
Sbjct: 143 AIDSLSYVSAQKQSIYRELDQTTQRFNVGLVAITDVQNARAQYDNVLASEVTARNNLDNT 202
Query: 262 RLTLEYLT--------NLSVKNLKKTTIDAPNLQLRERQD----LVSLR--EQISAIRYQ 307
TL +T L++ DA N L+E ++ L+S R + ++ + +
Sbjct: 203 METLRQVTGQFYPQLAGLNIDRFAPQKPDAVNSLLKEAENRNLSLLSARLSQDLAREQIR 262
Query: 308 NKQLNYYPKIDVFDSWLFWIQKPAYA-----TGRFGNFYPGQQNTAGVTATLNIFDDIGL 362
+ + + P +++ S + Y+ F + Y G QN G++ +L ++ G
Sbjct: 263 SAESGHMPTLNLTAS--TGVTNTNYSGSNAVGNNFNDTYVG-QNQVGLSFSLPMYSGGGT 319
Query: 363 SLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFANI 422
S + Q +A+ +N+ E + ++L A I SS +S++A + +
Sbjct: 320 SSRVQQAQHSFVASSENM-------ESAHRSVIQTLRSAHNNISSSISSVNAYKQAVVSA 372
Query: 423 KRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFN 467
+ DA + R + DA A + +Y+ N
Sbjct: 373 QSSLDAMEAGYQVGTRTIVDVLDATTTLYNAKQQLSGARYDYLIN 417
>ref|NP_661013.1| (NC_002932) outer membrane protein, putative [Chlorobium tepidum
TLS]
gb|AAM71355.1| (AE012789) outer membrane protein, putative [Chlorobium tepidum
TLS]
Length = 428
Score = 53.5 bits (127), Expect = 5e-06
Identities = 82/363 (22%), Positives = 145/363 (39%), Gaps = 49/363 (13%)
Query: 121 FLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVAN 180
F+P N +YN AR T E Y+ + + V D+ SA R ++
Sbjct: 87 FMP--NNNYN----ARFTAEMMLYDFGRTASTV---------DLAKAARNSARLRQDMTL 131
Query: 181 LEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSL 240
+ S L VQ +Y + QK++ ++T++ + K YD+G T DL +
Sbjct: 132 RDLS-----LATVQAFYSVLFLQEAVRVQQKEVAALQTNLDHMQKRYDQGAATRFDLLTT 186
Query: 241 KAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVK---------NLKKTTIDAPNL---QL 288
+ + + +D Q L +TL L L K ++ +DA L L
Sbjct: 187 QVRLAGAANREIDYQNQLRNQEITLRRLCGLDEKAPLSLKGSFDITAADMDADKLAASAL 246
Query: 289 RERQDLVSLREQISAIRYQNK--QLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQN 346
R +++ RE A Y+ + PKI SW G + + N
Sbjct: 247 DHRPEVMLARENFKAASYKKNLATREFLPKIVGSASW-------GSTNGYVPDLDKMRTN 299
Query: 347 TA-GVTATLNIFDDIGLSLQ-KQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAK 404
A GV + IFD S +++ + + A ++ L +++ Q + Q L + K
Sbjct: 300 VAVGVELQVPIFDGFRKSAALREATAMKRSAEQQQLDAEQVSQAEVRQSV-NDLKSSAEK 358
Query: 405 IESSKASLDAANLSFANIKRKYDANLVDFTTYLRGLTTRFDAEVA-----YNLALNNYEV 459
I++++ + A+L+ + + +YD L L +AE+A Y +N Y V
Sbjct: 359 IQTTRLQVSQADLAAKHARIRYDNGLATTLDLLDAEAALAEAELANLQARYEYVMNAYSV 418
Query: 460 QKA 462
++A
Sbjct: 419 RRA 421
>pdb|1EK9|A Chain A, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|B Chain B, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|C Chain C, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
Length = 428
Score = 52.4 bits (124), Expect = 1e-05
Identities = 87/386 (22%), Positives = 156/386 (39%), Gaps = 56/386 (14%)
Query: 117 AKAMFLPTLN--ASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFS-DVNNVKEKSAT 173
A++ LP L A Y + N RD N Q+T ++F+ ++EK+A
Sbjct: 34 ARSPLLPQLGLGADYTYSNGYRDANGINS-NATSASLQLTQSIFDXSKWRALTLQEKAAG 92
Query: 174 YRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTT 233
+ + +Q++ L Y+ N + + Q + E I + + T+ ++ GL
Sbjct: 93 IQD--VTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVA 150
Query: 234 IDDLQSLKAQ------GNLSEYDILDMQFALEQNR-LTLEYLTNLSVKNLKKTTIDAPN- 285
I D+Q+ +AQ L+ + LD A+EQ R +T Y L+ N++ D P
Sbjct: 151 ITDVQNARAQYDTVLANELTARNNLDN--AVEQLRQITGNYYPELAALNVENFKTDKPQP 208
Query: 286 ---------------LQLRERQDLVSLREQISAIRYQNKQLNYYPKIDVFDSWLFWIQKP 330
LQ R QDL REQI + Q + P +D+ S I
Sbjct: 209 VNALLKEAEKRNLSLLQARLSQDLA--REQI-----RQAQDGHLPTLDLTAS--TGISDT 259
Query: 331 AYA----TGRFGNFYPGQ---QNTAGVTATLNIFDDIGLSLQKQSIMLGQLANEKNL--A 381
+Y+ G G Y QN G++ +L I+ ++ Q + + + L A
Sbjct: 260 SYSGSKTRGAAGTQYDDSNXGQNKVGLSFSLPIYQGGXVNSQVKQAQYNFVGASEQLESA 319
Query: 382 YKKLEQEKDEQLYR-----KSLDIARAKIESSKASLDAANLSFANIKRKYDANLVDFTTY 436
++ + Q S++ + + S+++SLDA + ++ + +++D TT
Sbjct: 320 HRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAXEAGY-SVGTRTIVDVLDATTT 378
Query: 437 LRGLTTRFDAEVAYNLALNNYEVQKA 462
L A YN +N ++ A
Sbjct: 379 LYNAKQEL-ANARYNYLINQLNIKSA 403
>sp|P02930|TOLC_ECOLI Outer membrane protein tolC precursor
emb|CAA37982.1| (X54049) outer membrane protein [Escherichia coli]
Length = 495
Score = 50.4 bits (119), Expect = 4e-05
Identities = 87/386 (22%), Positives = 156/386 (39%), Gaps = 56/386 (14%)
Query: 117 AKAMFLPTLN--ASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFS-DVNNVKEKSAT 173
A++ LP L A Y + N RD N Q+T ++F+ ++EK+A
Sbjct: 58 ARSPLLPQLGLGADYTYSNGYRDANGINS-NATSASLQLTQSIFDMSKWRALTLQEKAAG 116
Query: 174 YRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTT 233
+ + +Q++ L Y+ N + + Q + E I + + T+ ++ GL
Sbjct: 117 IQD--VTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVA 174
Query: 234 IDDLQSLKAQ------GNLSEYDILDMQFALEQNR-LTLEYLTNLSVKNLKKTTIDAPN- 285
I D+Q+ +AQ L+ + LD A+EQ R +T Y L+ N++ D P
Sbjct: 175 ITDVQNARAQYDTVLANELTARNNLDN--AVEQLRQITGNYYPELAALNVENFKTDKPQP 232
Query: 286 ---------------LQLRERQDLVSLREQISAIRYQNKQLNYYPKIDVFDSWLFWIQKP 330
LQ R QDL REQI + Q + P +D+ S I
Sbjct: 233 VNALLKEAEKRNLSLLQARLSQDLA--REQI-----RQAQDGHLPTLDLTAS--TGISDT 283
Query: 331 AYA----TGRFGNFYPGQ---QNTAGVTATLNIFDDIGLSLQKQSIMLGQLANEKNL--A 381
+Y+ G G Y QN G++ +L I+ ++ Q + + + L A
Sbjct: 284 SYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLESA 343
Query: 382 YKKLEQEKDEQLYR-----KSLDIARAKIESSKASLDAANLSFANIKRKYDANLVDFTTY 436
++ + Q S++ + + S+++SLDA + ++ + +++D TT
Sbjct: 344 HRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGY-SVGTRTIVDVLDATTT 402
Query: 437 LRGLTTRFDAEVAYNLALNNYEVQKA 462
L A YN +N ++ A
Sbjct: 403 LYNAKQEL-ANARYNYLINQLNIKSA 427
>ref|NP_417507.1| (NC_000913) outer membrane channel; specific tolerance to colicin
E1; segregation of daughter chromosomes [Escherichia
coli K12]
pir||MMECTC export system outer membrane protein tolC precursor [validated] -
Escherichia coli (strain K-12)
gb|AAA69203.1| (U28377) CG Site No. 97; alternate names colE1-i, mtcB, refI, tol-8
[Escherichia coli]
gb|AAC76071.1| (AE000385) outer membrane channel; specific tolerance to colicin
E1; segregation of daughter chromosomes [Escherichia
coli K12]
Length = 495
Score = 50.1 bits (118), Expect = 6e-05
Identities = 86/389 (22%), Positives = 156/389 (39%), Gaps = 62/389 (15%)
Query: 117 AKAMFLPTLN--ASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFS-DVNNVKEKSAT 173
A++ LP L A Y + N RD N Q+T ++F+ ++EK+A
Sbjct: 58 ARSPLLPQLGLGADYTYSNGYRDANGINS-NATSASLQLTQSIFDMSKWRALTLQEKAAG 116
Query: 174 YRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTT 233
+ + +Q++ L Y+ N + + Q + E I + + T+ ++ GL
Sbjct: 117 IQD--VTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVA 174
Query: 234 IDDLQSLKAQGNLSEYDIL---------DMQFALEQNR-LTLEYLTNLSVKNLKKTTIDA 283
I D+Q+ +AQ YD + ++ A+EQ R +T Y L+ N++ D
Sbjct: 175 ITDVQNARAQ-----YDTVLANEVTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDK 229
Query: 284 PN----------------LQLRERQDLVSLREQISAIRYQNKQLNYYPKIDVFDSWLFWI 327
P LQ R QDL REQI + Q + P +D+ S I
Sbjct: 230 PQPVNALLKEAEKRNLSLLQARLSQDLA--REQI-----RQAQDGHLPTLDLTAS--TGI 280
Query: 328 QKPAYA----TGRFGNFYPGQ---QNTAGVTATLNIFDDIGLSLQKQSIMLGQLANEKNL 380
+Y+ G G Y QN G++ +L I+ ++ Q + + + L
Sbjct: 281 SDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQL 340
Query: 381 --AYKKLEQEKDEQLYR-----KSLDIARAKIESSKASLDAANLSFANIKRKYDANLVDF 433
A++ + Q S++ + + S+++SLDA + ++ + +++D
Sbjct: 341 ESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGY-SVGTRTIVDVLDA 399
Query: 434 TTYLRGLTTRFDAEVAYNLALNNYEVQKA 462
TT L A YN +N ++ A
Sbjct: 400 TTTLYNAKQEL-ANARYNYLINQLNIKSA 427
>ref|NP_289615.1| (NC_002655) outer membrane channel; specific tolerance to colicin
E1; segregation of daughter chromosomes [Escherichia
coli O157:H7 EDL933]
ref|NP_311950.1| (NC_002695) outer membrane channel TolC [Escherichia coli O157:H7]
gb|AAG58174.1|AE005533_7 (AE005533) outer membrane channel; specific tolerance to colicin
E1; segregation of daughter chromosomes [Escherichia
coli O157:H7 EDL933]
dbj|BAB37346.1| (AP002564) outer membrane channel TolC [Escherichia coli O157:H7]
Length = 495
Score = 50.1 bits (118), Expect = 6e-05
Identities = 86/389 (22%), Positives = 156/389 (39%), Gaps = 62/389 (15%)
Query: 117 AKAMFLPTLN--ASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFS-DVNNVKEKSAT 173
A++ LP L A Y + N RD N Q+T ++F+ ++EK+A
Sbjct: 58 ARSPLLPQLGLGADYTYSNGYRDANGINS-NATSASLQLTQSIFDMSKWRALTLQEKAAG 116
Query: 174 YRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTT 233
+ + +Q++ L Y+ N + + Q + E I + + T+ ++ GL
Sbjct: 117 IQD--VTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVA 174
Query: 234 IDDLQSLKAQGNLSEYDIL---------DMQFALEQNR-LTLEYLTNLSVKNLKKTTIDA 283
I D+Q+ +AQ YD + ++ A+EQ R +T Y L+ N++ D
Sbjct: 175 ITDVQNARAQ-----YDTVLANEVTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDK 229
Query: 284 PN----------------LQLRERQDLVSLREQISAIRYQNKQLNYYPKIDVFDSWLFWI 327
P LQ R QDL REQI + Q + P +D+ S I
Sbjct: 230 PQPVNALLKEAEKRNLSLLQARLSQDLA--REQI-----RQAQDGHLPTLDLTAS--SGI 280
Query: 328 QKPAYA----TGRFGNFYPGQ---QNTAGVTATLNIFDDIGLSLQKQSIMLGQLANEKNL 380
+Y+ G G Y QN G++ +L I+ ++ Q + + + L
Sbjct: 281 SDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQL 340
Query: 381 --AYKKLEQEKDEQLYR-----KSLDIARAKIESSKASLDAANLSFANIKRKYDANLVDF 433
A++ + Q S++ + + S+++SLDA + ++ + +++D
Sbjct: 341 ESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGY-SVGTRTIVDVLDA 399
Query: 434 TTYLRGLTTRFDAEVAYNLALNNYEVQKA 462
TT L A YN +N ++ A
Sbjct: 400 TTTLYNAKQEL-ANARYNYLINQLNIKSA 427
>ref|NP_232066.1| (NC_002505) outer membrane protein TolC [Vibrio cholerae]
sp|Q9K2Y1|TOLC_VIBCH Outer membrane protein tolC precursor
pir||B82077 outer membrane protein TolC VC2436 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF91468.1| (AF282892) outer membrane protein TolC [Vibrio cholerae]
gb|AAF95579.1| (AE004313) outer membrane protein TolC [Vibrio cholerae]
Length = 438
Score = 49.3 bits (116), Expect = 1e-04
Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 39/203 (19%)
Query: 92 KGATTNLSLQAQELSVKQAMKNHTIAKAMFLP--TLNASYNFKNEARDTPEY---KHYNT 146
K NLSL A +S A N ++A + LP TL+ YN+ N + D + + YN
Sbjct: 236 KAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYND 295
Query: 147 QQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLARM 206
++ + + ++ G + + K+ Y + +LE + Y VV+ Y NN+
Sbjct: 296 FKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLE----AAYRSVVKDVRAYNNNINAS 351
Query: 207 IALQKKLEQ----IKTDIKRVTKLYDKGLTTIDD-------------------------- 236
I + EQ K+ ++ +D G TI D
Sbjct: 352 IGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSV 411
Query: 237 LQSLKAQGNLSEYDILDMQFALE 259
LQ +A G LSE D++D+ L+
Sbjct: 412 LQLRQAIGTLSEQDVMDVNAGLK 434
>ref|NP_539946.1| (NC_003317) OUTER MEMBRANE PROTEIN TOLC [Brucella melitensis]
gb|AAL52210.1| (AE009543) OUTER MEMBRANE PROTEIN TOLC [Brucella melitensis]
Length = 456
Score = 48.9 bits (115), Expect = 1e-04
Identities = 76/349 (21%), Positives = 134/349 (37%), Gaps = 29/349 (8%)
Query: 90 LLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEYKHYNTQQL 149
L+K N L + V+ +N IAK+ + P + SYN +Y+ T +
Sbjct: 38 LVKAYKNNAPLNSSRAGVRIQDENVAIAKSAYRPQITGSYNISRGKTPATDYRTTGTVGI 97
Query: 150 QAQVTLNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIAL 209
Q L F+GF NNV + NL Q+ Q V Y + + L ++ AL
Sbjct: 98 QLNQML--FDGFQTRNNVAAAETQVFAQRENLRNDEQNTLYQAVAAYMDVY-QLRQIAAL 154
Query: 210 -QKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQG-------NLSEYDILDMQFALEQN 261
+K L + ++ D G T D+ +A N + D+ + Q
Sbjct: 155 REKNLAAMNEQVRAARARLDVGEGTRTDVAQAEASRSTAIAALNAARADVKTAEATYMQV 214
Query: 262 RLTL-EYLTNLS-VKNLKKTTIDAPNLQLRERQDLVSLREQISAIRY--QNKQLNYYPKI 317
+L + LT S ++L ++ A L +++ + ++A Y + K+ P I
Sbjct: 215 VGSLPDKLTPASAARHLPQSPSQAYASALASHPGILATKYAVNAAGYNVKAKEGALLPTI 274
Query: 318 DVFDSWLFWIQKPAYATGRFGNFYPGQQNTA--GVTATLNIFDD--IGLSLQKQSIMLGQ 373
+ S A G NTA GV ++ I+ +++ LGQ
Sbjct: 275 GLTAS--------ASQLDTIAGTDMGDGNTASIGVGVSIPIYTGGRTSAQIRQSKEQLGQ 326
Query: 374 LANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFANI 422
E ++ K+ Q L+ ARA + +++ + AA L+ +
Sbjct: 327 ARIEVDVVQDKVRQAISSAW--SQLEAARASVAANRDGIAAAQLALDGV 373
>gb|AAD51072.1|AF175719_1 (AF175719) immunoreactive 51kD antigen PG52 [Porphyromonas
gingivalis]
Length = 455
Score = 48.5 bits (114), Expect = 2e-04
Identities = 45/208 (21%), Positives = 95/208 (45%), Gaps = 10/208 (4%)
Query: 97 NLSLQAQELSVKQAMKNHTIAKAMFLPTLNA----SYNF---KNEARDTPEYKHYNTQQL 149
NL+L+ QE+ + + + A+ FLP++NA +Y+F K++ T + NT L
Sbjct: 48 NLNLRRQEIEQENRIISLDAARHSFLPSVNAGIGHNYSFGRSKDKTGVTVDRSSMNTN-L 106
Query: 150 QAQVTLNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIAL 209
++ VF+G ++++K++ +A L+ +R+ LQ+ Y
Sbjct: 107 SIGASVEVFSGTRRLHDLKQQKYNVEDGIARLQKAREDPSLQIAALYINLLFRQEMTRTA 166
Query: 210 QKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQNRLTLEYLT 269
+ +L I+ R ++ G L + AQ +++ + L +Q+ E+ L+
Sbjct: 167 ETQLALIREQRNRTAEMVRVGKWAEGKLLDINAQ--MAKDEQLLVQYRSEEELARLDLGQ 224
Query: 270 NLSVKNLKKTTIDAPNLQLRERQDLVSL 297
L +++ + + AP+ + + L SL
Sbjct: 225 ALELEHPESIAVKAPDTDVLVAERLGSL 252
>gb|AAC97166.1| (AF027405) SapF [Campylobacter fetus]
gb|AAC97199.1| (AF071883) SapF [Campylobacter fetus]
Length = 433
Score = 48.1 bits (113), Expect = 2e-04
Identities = 40/184 (21%), Positives = 83/184 (44%), Gaps = 3/184 (1%)
Query: 97 NLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKN-EARDTPEY-KHYNTQQLQAQVT 154
NL + E+S + A + LPT++ S F N + +D + N + + T
Sbjct: 242 NLDYKQSEISTQIATEEKNKRMTGVLPTVDFSVGFSNSDYKDDARFGDEDNKVETMIRFT 301
Query: 155 LNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLE 214
+ +F + ++E S+++ ++ V ++ Q ++ N L ++ LE
Sbjct: 302 MPLFKSGLTIERIQEGELLKMSSMSKQLDMQKKVAIEQKQAISDFRNYLQEANIVRNSLE 361
Query: 215 QIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQNRLTLEYLT-NLSV 273
+ + + + Y++GL I DL +A+ ++ D L+ + L L LEYL N+S+
Sbjct: 362 HARVYEQAIERGYEEGLKNIVDLLDARARVYKTKADALNAGYQLILGYLNLEYLIGNISI 421
Query: 274 KNLK 277
++
Sbjct: 422 DTIR 425
>pir||S30782 integrin homolog - yeast (Saccharomyces cerevisiae)
Length = 1726
Score = 45.4 bits (106), Expect = 0.001
Identities = 67/295 (22%), Positives = 121/295 (40%), Gaps = 64/295 (21%)
Query: 25 KTPDEIKQILNNYSHKNLKLIDPPTSS---LEATPSFLSSPKETATTINQEIAKYHEKSD 81
K +++K+ +++ ++I SS E+ S L ETATT N E
Sbjct: 952 KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNK----- 1006
Query: 82 KAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEY 141
+ EL K T L+A EL+ + +KN K L S E ++ E+
Sbjct: 1007 -----ISELTK---TREELEA-ELAAYKNLKNELETK------LETSEKALKEVKENEEH 1051
Query: 142 KHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFN 201
QL+ + T K++ + R+N+ +LE + + Q+ ++Y E
Sbjct: 1052 LKEEKIQLEKEAT-----------ETKQQLNSLRANLESLEKEHEDLAAQL-KKYEEQIA 1099
Query: 202 NLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQN 261
N R + +++L D+ +T + +S+K + + E ++ M+ E+
Sbjct: 1100 NKERQYN------------EEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQ 1147
Query: 262 RLTLEYLTNLSVKNLKKTTIDAPNLQLRE-----RQDLVSLREQISAIRYQNKQL 311
NLKK+ IDA NLQ++E + SL E I +I + ++
Sbjct: 1148 ------------SNLKKSEIDALNLQIKELKKKNETNEASLLESIKSIESETVKI 1190
>gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae]
Length = 1015
Score = 45.4 bits (106), Expect = 0.001
Identities = 67/295 (22%), Positives = 121/295 (40%), Gaps = 64/295 (21%)
Query: 25 KTPDEIKQILNNYSHKNLKLIDPPTSS---LEATPSFLSSPKETATTINQEIAKYHEKSD 81
K +++K+ +++ ++I SS E+ S L ETATT N E
Sbjct: 241 KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNK----- 295
Query: 82 KAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEY 141
+ EL K T L+A EL+ + +KN K L S E ++ E+
Sbjct: 296 -----ISELTK---TREELEA-ELAAYKNLKNELETK------LETSEKALKEVKENEEH 340
Query: 142 KHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFN 201
QL+ + T K++ + R+N+ +LE + + Q+ ++Y E
Sbjct: 341 LKEEKIQLEKEAT-----------ETKQQLNSLRANLESLEKEHEDLAAQL-KKYEEQIA 388
Query: 202 NLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQN 261
N R + +++L D+ +T + +S+K + + E ++ M+ E+
Sbjct: 389 NKERQYN------------EEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQ 436
Query: 262 RLTLEYLTNLSVKNLKKTTIDAPNLQLRE-----RQDLVSLREQISAIRYQNKQL 311
NLKK+ IDA NLQ++E + SL E I +I + ++
Sbjct: 437 ------------SNLKKSEIDALNLQIKELKKKNETNEASLLESIKSIESETVKI 479
>ref|NP_213478.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||B70361 conserved hypothetical protein aq_699 - Aquifex aeolicus
gb|AAC06879.1| (AE000702) hypothetical protein [Aquifex aeolicus]
Length = 437
Score = 45.4 bits (106), Expect = 0.001
Identities = 84/426 (19%), Positives = 168/426 (38%), Gaps = 51/426 (11%)
Query: 83 AALGLYELLKGAT-TNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEY 141
A L L +K A NL L +Q VK + + + + PT+ + D Y
Sbjct: 16 AELPLKVFIKDALQNNLELSSQRREVKASEYEYKSVRGLLFPTVKLEETYTKT--DISSY 73
Query: 142 KHYNTQQLQAQVTLNVF-----NGFSDVNNVKEKSA------------TYRSNVANLEYS 184
+ T+ Q ++TL F N + N + K +++ N
Sbjct: 74 YLF-TKLNQERITLQDFTPSKLNDPGSIQNFETKLTLEIPIWMGGKLRAFKNMAKNKWKG 132
Query: 185 RQSVY----LQVVQQYYEYFNN--LAR--MIALQKKLEQIKTDIKRVTKLYDKGLTTIDD 236
+++Y +V+ + YE + N LA+ + ++ ++ + ++ K Y G+ D
Sbjct: 133 DKTIYGRKEEEVILKVYEAYANAVLAKNAVEVAKQAVKDAEEHVRLAEKAYKTGVALFAD 192
Query: 237 LQSLKAQGNLSEYDILDMQFALEQNRLTLEYLTN-----LSVKNLKKT-TIDAPNLQ--- 287
+ K + ++ ++ Q E + LE LTN VK+ K ++ L+
Sbjct: 193 VLRAKVYLSKAKEKLVQAQNNYEVAKKALELLTNKNYGEFDVKDFSKCPSVKVEELKSKA 252
Query: 288 LRERQDLVSLREQISAIRYQNKQL--NYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQ 345
L R+D ++L+ I +++ K + P++ F ++ + + + + G+
Sbjct: 253 LNHREDYLALKYYIKSLKEGQKSALGDILPQVFAFANYSMYDENTPFGS-------QGEG 305
Query: 346 NTAGVTATLNIFDDIGLSLQKQSIMLGQLA--NEKNLAYKKLEQEKDEQLYRKSLDIARA 403
GV N + +K+S +LA ++ L K + E D+ + A
Sbjct: 306 YMLGVGLKWNFNTGLSPIYKKKSFKEKELALKRKRELLAKAIMFEIDKAF--AEYENALK 363
Query: 404 KIESSKASLDAANLSFANIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKAN 463
+ES+K+ + A I+++Y+ + L T A Y AL + V A
Sbjct: 364 TLESAKSRKEEAKEVLRVIEKRYEVGMARMVDLLDAQTQLDMARFEYAKALRDCNVAYAK 423
Query: 464 YIFNSG 469
+F++G
Sbjct: 424 ALFSAG 429
>ref|NP_010225.1| (NC_001136) involved intracellular protein transport, coiled-coil
protein necessary for protein transport from ER to Golgi;
Uso1p [Saccharomyces cerevisiae]
pir||S67593 transport protein USO1 - yeast (Saccharomyces cerevisiae)
emb|CAA98621.1| (Z74106) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1790
Score = 45.1 bits (105), Expect = 0.002
Identities = 66/295 (22%), Positives = 121/295 (40%), Gaps = 64/295 (21%)
Query: 25 KTPDEIKQILNNYSHKNLKLIDPPTSS---LEATPSFLSSPKETATTINQEIAKYHEKSD 81
K +++K+ +++ ++I SS E+ S L ETATT N E
Sbjct: 1022 KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNK----- 1076
Query: 82 KAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEY 141
+ EL K T L+A EL+ + +KN K L S E ++ E+
Sbjct: 1077 -----ISELTK---TREELEA-ELAAYKNLKNELETK------LETSEKALKEVKENEEH 1121
Query: 142 KHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFN 201
QL+ + T K++ + R+N+ +LE + + Q+ ++Y E
Sbjct: 1122 LKEEKIQLEKEAT-----------ETKQQLNSLRANLESLEKEHEDLAAQL-KKYEEQIA 1169
Query: 202 NLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQN 261
N R + +++L D+ +T + +S+K + + E ++ M+ E+
Sbjct: 1170 NKERQYN------------EEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQ 1217
Query: 262 RLTLEYLTNLSVKNLKKTTIDAPNLQLRE-----RQDLVSLREQISAIRYQNKQL 311
NLKK+ IDA NLQ++E + SL E I ++ + ++
Sbjct: 1218 ------------SNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKI 1260
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1
emb|CAA38253.1| (X54378) Uso1 protein [Saccharomyces cerevisiae]
Length = 1790
Score = 45.1 bits (105), Expect = 0.002
Identities = 66/295 (22%), Positives = 121/295 (40%), Gaps = 64/295 (21%)
Query: 25 KTPDEIKQILNNYSHKNLKLIDPPTSS---LEATPSFLSSPKETATTINQEIAKYHEKSD 81
K +++K+ +++ ++I SS E+ S L ETATT N E
Sbjct: 1022 KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNK----- 1076
Query: 82 KAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEY 141
+ EL K T L+A EL+ + +KN K L S E ++ E+
Sbjct: 1077 -----ISELTK---TREELEA-ELAAYKNLKNELETK------LETSEKALKEVKENEEH 1121
Query: 142 KHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFN 201
QL+ + T K++ + R+N+ +LE + + Q+ ++Y E
Sbjct: 1122 LKEEKIQLEKEAT-----------ETKQQLNSLRANLESLEKEHEDLAAQL-KKYEEQIA 1169
Query: 202 NLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQN 261
N R + +++L D+ +T + +S+K + + E ++ M+ E+
Sbjct: 1170 NKERQYN------------EEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQ 1217
Query: 262 RLTLEYLTNLSVKNLKKTTIDAPNLQLRE-----RQDLVSLREQISAIRYQNKQL 311
NLKK+ IDA NLQ++E + SL E I ++ + ++
Sbjct: 1218 ------------SNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKI 1260
>pir||T18296 myosin heavy chain - Entamoeba histolytica
gb|AAB48065.1| (L03534) myosin heavy chain [Entamoeba histolytica]
Length = 2139
Score = 45.1 bits (105), Expect = 0.002
Identities = 95/457 (20%), Positives = 192/457 (41%), Gaps = 63/457 (13%)
Query: 29 EIKQILNNY---SHKNLKLIDPP-TSSLEATPSFLSSPKETATTINQEIAKYHEKSDKAA 84
E+K + NN ++K LK D TS +E T + + + + Q+ +++DKA
Sbjct: 1582 EMKGVQNNQLQATNKELKAKDNDLTSKIEITENEMKKLENAKKRLEQD----KDEADKAV 1637
Query: 85 L-------GLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARD 137
GL E +K TT + +++ ++ + + + E R
Sbjct: 1638 SEQTIKRKGLEEEVKKLTTEIQALKFQINAPSSVAQEEEKQRLESDIAELKEQLEQE-RT 1696
Query: 138 TPEYKHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRS-NVANLEYSRQS--VYLQVVQ 194
T +++QA++ FN DV N +EK S N A ++ ++ ++
Sbjct: 1697 TAANAEAERKKIQAELDEVKFN-LEDVTNQREKLVAKNSENDAEIDSLKEEKKALEDEIE 1755
Query: 195 QYYEYFNNLARMI-ALQKK----LEQIKTDIKRVTKLYDKGLTTIDDLQS--------LK 241
+ + N L+ I +L +K L+ +D+ K D+ T D L++ ++
Sbjct: 1756 KITDDNNKLSEEIDSLDRKYNALLDSKDSDVSMKEKFQDELKVTKDALETEKKNHAETMR 1815
Query: 242 AQGNLSEYDILDMQFALE------------QNRLTLEY-LTNLSVKNLKKTTIDAPNLQL 288
+G L E + ++Q LE + + T +Y + +K+L D +
Sbjct: 1816 LKGRL-EKEAAEVQVRLEALQKNLDLAQQEKAKATKDYRAADGELKSLMNELDDVKDQLD 1874
Query: 289 RERQDLVSLREQISAIRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNFYPGQQNTA 348
+ + DL ++++ + + K L + VFDS + +Q+ + G +Q A
Sbjct: 1875 KAQDDLADKEDELATLDQKYKTL--VKQKSVFDSRIQEMQEQLDLE-KAGRAKAQKQKQA 1931
Query: 349 ------GVTATLNIFDDIGLSLQKQSIMLGQLANEKNLAYKKLEQEK----DEQLYRKSL 398
+ N F++ + K+ + L+ +K+ K+LE+E+ D + + L
Sbjct: 1932 YEKKLQELQENDNDFEEYKETADKR---INTLSAQKDDLQKELEKERGLKQDSEKEVQRL 1988
Query: 399 DIARAKIESSKASLDAANLSFANIKRKYDANLVDFTT 435
+ ++E+ A + AN+S A +K KY+A + + TT
Sbjct: 1989 RVKCQELETKVAEVGGANVSIAKVKAKYEAEIEELTT 2025
>emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1268
Score = 45.1 bits (105), Expect = 0.002
Identities = 66/295 (22%), Positives = 121/295 (40%), Gaps = 64/295 (21%)
Query: 25 KTPDEIKQILNNYSHKNLKLIDPPTSS---LEATPSFLSSPKETATTINQEIAKYHEKSD 81
K +++K+ +++ ++I SS E+ S L ETATT N E
Sbjct: 500 KNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDENVNK----- 554
Query: 82 KAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEY 141
+ EL K T L+A EL+ + +KN K L S E ++ E+
Sbjct: 555 -----ISELTK---TREELEA-ELAAYKNLKNELETK------LETSEKALKEVKENEEH 599
Query: 142 KHYNTQQLQAQVTLNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFN 201
QL+ + T K++ + R+N+ +LE + + Q+ ++Y E
Sbjct: 600 LKEEKIQLEKEAT-----------ETKQQLNSLRANLESLEKEHEDLAAQL-KKYEEQIA 647
Query: 202 NLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQN 261
N R + +++L D+ +T + +S+K + + E ++ M+ E+
Sbjct: 648 NKERQYN------------EEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQ 695
Query: 262 RLTLEYLTNLSVKNLKKTTIDAPNLQLRE-----RQDLVSLREQISAIRYQNKQL 311
NLKK+ IDA NLQ++E + SL E I ++ + ++
Sbjct: 696 ------------SNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKI 738
>ref|NP_223965.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71831 hypothetical protein jhp1247 - Helicobacter pylori (strain J99)
gb|AAD06820.1| (AE001548) putative [Helicobacter pylori J99]
Length = 412
Score = 44.3 bits (103), Expect = 0.003
Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 32/198 (16%)
Query: 89 ELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNAS--YNFKNEARDTPEYKHYNT 146
EL + TN + L ++A K+ T+AK FL +N + Y F+++ +Y +Y+
Sbjct: 235 ELHNISATNYDIAIARLDEEKAQKDITLAKKSFLEDINVTGVYYFRSK-----QYYNYDM 289
Query: 147 QQLQAQVTLNVFNGFSD-VNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLAR 205
+ + L ++ + V K++S ++S V N + + + L++ L +
Sbjct: 290 FSVALSIPLPLYGKQAKLVEQKKKESLAFKSEVENAKNKTRHLALKL----------LKK 339
Query: 206 MIALQKKLEQIKTDIK---RVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQNR 262
+ LQK LE I IK ++ ++Y L T D + Y+ L+ + ++ +
Sbjct: 340 LETLQKNLESINKIIKQNEKIAQIYALDLKTNGDYNAY--------YNALNDKITIQITQ 391
Query: 263 L-TLEYLTN--LSVKNLK 277
L TL L + LS++NLK
Sbjct: 392 LETLSALNSAYLSLQNLK 409
>gb|AAC33452.1| (AF064762) ZapD [Proteus mirabilis]
Length = 449
Score = 44.3 bits (103), Expect = 0.003
Identities = 34/184 (18%), Positives = 83/184 (44%), Gaps = 3/184 (1%)
Query: 97 NLSLQAQELSVKQAMKNHTIAKAMFLPTLN--ASYNFKNEARDTPEYKHYNTQQLQAQVT 154
NL +Q+ + A + + F PT+ A+Y+ N + + + Y + + V+
Sbjct: 259 NLKIQSARHEMAIAKQEIEKNRGEFFPTVQFYAAYSSSNSSSNNTINQKYQSANVGFYVS 318
Query: 155 LNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLE 214
+ +FNG ++++ +A Y+ + + Q++ ++ QY + +++A ++ +
Sbjct: 319 MPLFNGGKTTASMRQSTAKYQMSAFERDAIIQNIMQELRYQYQICSTSHIKLMAFEQAVS 378
Query: 215 QIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQNRLTLEYLTN-LSV 273
K + K Y G T+ D+ + + ++ D++ ++ Q L TN L +
Sbjct: 379 SAKLQLNATRKSYIGGQRTMVDVLNAEELLYRAQQDLIKAKYDYIQAWALLHQYTNTLDI 438
Query: 274 KNLK 277
+ +K
Sbjct: 439 EKIK 442
>sp|Q54001|TOLC_SALEN OUTER MEMBRANE PROTEIN TOLC PRECURSOR
pir||S70190 tolC protein - Salmonella enteritidis
gb|AAC43973.1| (U25178) TolC [Salmonella enteritidis]
Length = 491
Score = 43.9 bits (102), Expect = 0.004
Identities = 80/388 (20%), Positives = 150/388 (38%), Gaps = 54/388 (13%)
Query: 117 AKAMFLPTLN--ASYNFKNEARDTPEYKHYNTQ-QLQAQVTLNVFNGFSDVNNVKEKSAT 173
A++ LP L A Y + N RD T LQ TL + + + ++EK+A
Sbjct: 58 ARSPLLPQLGLGADYTYSNGYRDANGINSNETSASLQLTQTLFDMSKWRGLT-LQEKAAG 116
Query: 174 YRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIKTDIKRVTKLYDKGLTT 233
+ + +Q++ L Y++ N + + Q + E I + + T+ ++ GL
Sbjct: 117 IQD--VTYQTDQQTLILNTANAYFKVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVA 174
Query: 234 IDDLQSLKAQGNLSEYDIL---------DMQFALEQNR-LTLEY---LTNLSVKNLKKTT 280
I D+Q+ +AQ YD + ++ A+E+ R +T Y L +L+V++ K
Sbjct: 175 ITDVQNARAQ-----YDTVLANEVTVRNNLDNAVEELRQVTGNYYPELASLNVEHFKTDK 229
Query: 281 IDAPNLQLRERQD------LVSLREQISAIRYQNKQLNYYPKIDVFDSWLFWIQKPAYAT 334
A N L+E ++ L + ++ + + Q + P +++ S T
Sbjct: 230 PKAVNALLKEAENRNLSLLQARLSQDLAREQIRQAQDGHLPTLNLTPS-----------T 278
Query: 335 GRFGNFYPGQQNTAGVTATLNIFDD-IGLSLQKQSIMLGQLANEKNLAYKKL--EQEKDE 391
G Y G + A N+ + IGL+ G + ++ A E+ E
Sbjct: 279 GISDTSYSGSKTNAAQYDDSNMGQNKIGLNFSLPLYQGGMVNSQVKQAQYNFVGASEQLE 338
Query: 392 QLYRKSLDIARAKIESSKASLDAANL----------SFANIKRKYDANLVDFTTYLRGLT 441
+R + R+ + AS+ + N S ++ Y L T
Sbjct: 339 SAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATT 398
Query: 442 TRFDAEVAYNLALNNYEVQKANYIFNSG 469
T +DA+ A Y + + N + G
Sbjct: 399 TLYDAKQQLANARYTYLINQLNIKYALG 426
>ref|NP_604170.1| (NC_003454) Outer membrane protein tolC [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL95469.1| (AE010633) Outer membrane protein tolC [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 413
Score = 43.9 bits (102), Expect = 0.004
Identities = 67/322 (20%), Positives = 130/322 (39%), Gaps = 41/322 (12%)
Query: 144 YNTQQLQAQVTLNVFNGFSDVNNVKE--KSATYRSNVANLEYSRQSVYLQVVQQYYEYFN 201
Y+ Q + + L+ FSD+ N + ++ +Y + Y +Q L++
Sbjct: 113 YSFLQSKIKNRLDTIKIFSDIINAQRNLEALSYSEGILLKRYQKQEEQLKL------RLI 166
Query: 202 NLARMIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDM-QFALEQ 260
++ + +E IK + + + D +++ L + +S+ + L++ F +
Sbjct: 167 TKTDVLQTEYSIEDIKAQMINIKNIIDT------NMEKLYIRTGISKSEPLNLVPFDIPN 220
Query: 261 NRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQISAIRYQNKQLNYYPKIDVF 320
N NL +LK+ ++ + ++ E Q V+ +++A+ + P++ F
Sbjct: 221 N---FSEKINLD-SDLKQAINESISAKIAEEQVKVASATKMAAVG------DLLPQVSAF 270
Query: 321 DSWLFWIQKPAYATGR---FGNFYPGQQNTAGVTATLNIFDDIGLSLQKQSIMLGQLANE 377
S Y TG F Y + T GV + +F G L + Q E
Sbjct: 271 AS---------YGTGERTTFERSYKDSEWTGGVQVSWKVFS-FGSDLDNYRVAKLQEEQE 320
Query: 378 --KNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFANIKRKYDANLVDFTT 435
K + K+ + Y L + + +I S +L+ A ++F + KYDA L+
Sbjct: 321 ELKETSTKENIEINVRSAYLNVLSLEK-QIASQGKTLEVAKVNFELNQEKYDAGLISTVD 379
Query: 436 YLRGLTTRFDAEVAYNLALNNY 457
YL T A +AYN L +Y
Sbjct: 380 YLDFENTYRQARIAYNKVLLDY 401
>ref|NP_309892.1| (NC_002695) putative outer membrane channel protein [Escherichia
coli O157:H7]
dbj|BAB35288.1| (AP002556) putative outer membrane channel protein [Escherichia
coli O157:H7]
Length = 457
Score = 43.5 bits (101), Expect = 0.005
Identities = 47/175 (26%), Positives = 77/175 (43%), Gaps = 16/175 (9%)
Query: 100 LQAQELSVKQAMKNHTIAKAMFLPT--LNASYNFKNEARDTPEYKHYNTQQLQAQVTLNV 157
+Q E ++K A + A+A F PT L AS ++A + VTL +
Sbjct: 278 IQEAEHNLKSANADIGAARANFFPTISLTASAGVGSDALSSLFSHGMQIWSFTPSVTLPL 337
Query: 158 FNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIK 217
F G S++ ++ A R +A E + Q + V N LAR L+++L+ +
Sbjct: 338 FTGGSNLAQLRYAEAQKRGLIATYEKTVQRAFKDVA-------NALARRTTLEEQLDAQR 390
Query: 218 TDIKRVTKLYDKGLTTI-----DDLQSLKAQGNL--SEYDILDMQFALEQNRLTL 265
+K + D GL D L L AQ +L ++ ++L +Q NR+TL
Sbjct: 391 QYVKAEQQTVDVGLRRYQTGVGDYLTVLTAQRSLWSAQQELLALQLTDFTNRITL 445
>ref|NP_385620.1| (NC_003047) PUTATIVE OUTER MEMBRANE SECRETION PROTEIN
[Sinorhizobium meliloti]
emb|CAC46093.1| (AL591787) PUTATIVE OUTER MEMBRANE SECRETION PROTEIN [Sinorhizobium
meliloti]
Length = 456
Score = 43.1 bits (100), Expect = 0.007
Identities = 62/348 (17%), Positives = 131/348 (36%), Gaps = 23/348 (6%)
Query: 90 LLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEY--KHYNTQ 147
+ K N L A ++ + IAKA + P ++AS D + +++
Sbjct: 34 MAKAYANNPDLNAARAGLRATDEGVPIAKAGYRPQISASATGTLSRVDAERTGTRDFHSG 93
Query: 148 QLQAQVTLNVFNGFSDVNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLARMI 207
Q+ +T +F+GF +NNV+ A S+ L+ + + L Q Y + +
Sbjct: 94 QVGISITQTIFDGFQTLNNVRAAQADVFSSRETLKANEIQILLSAAQSYANIARDQQVVS 153
Query: 208 ALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQNRLTLEY 267
++ L ++ + + G T D+ +A+ ++ ++ L+Q+
Sbjct: 154 IRRQNLAFLREQLSAAQARLEVGEGTRTDVSQAEAELANAQSLLVAAIAQLKQSEAVYVQ 213
Query: 268 LTNL----------SVKNLKKTTIDAPNLQLRERQDLVSLREQISAIRYQNKQLNYYPKI 317
+ + K + ++ A LRE +++ + + + YQ K
Sbjct: 214 IVGAAPTGIRQPGPATKAMPRSLDQAVATGLRENPQILAAQYAVDSAGYQVKSAE----- 268
Query: 318 DVFDSWLFWIQKPAYATGRFGNFYPG-QQNTAGVTATLNIFDDIGLSLQKQSIMLGQLAN 376
+ L + + GN G TA VTA L + G + Q ++
Sbjct: 269 ---GTMLPGVVLQGAVSRNTGNAGQGLDDTTASVTARLEVPIYQGGAEYGQIRQAKEILG 325
Query: 377 EKNLAYKKLEQEKDEQLY--RKSLDIARAKIESSKASLDAANLSFANI 422
++ + + + L+ A A+I +S++ + AANL+ +
Sbjct: 326 QQRILVDSARASVQQTVVSAHAQLESALARIRASRSQIAAANLALEGV 373
>ref|NP_208119.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64685 hypothetical protein HP1327 - Helicobacter pylori (strain 26695)
gb|AAD08377.1| (AE000634) H. pylori predicted coding region HP1327 [Helicobacter
pylori 26695]
Length = 412
Score = 42.7 bits (99), Expect = 0.009
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 28/196 (14%)
Query: 89 ELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNAS--YNFKNEARDTPEYKHYNT 146
EL + TN + L +++ K+ T+AK FL +N + Y F+++ +Y +Y+
Sbjct: 235 ELHNISATNYDIAIARLDEEKSQKDITLAKKSFLEDVNVTGVYYFRSK-----QYYNYDM 289
Query: 147 QQLQAQVTLNVFNGFSD-VNNVKEKSATYRSNVANLEYSRQSVYLQVVQQYYEYFNNLAR 205
+ + L ++ + V K++S ++S V N + + L++ L +
Sbjct: 290 FSIALSIPLPIYGKQAKLVEQKKKESLVFKSEVENTKNKTHHLALKL----------LKK 339
Query: 206 MIALQKKLEQIKTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSE-YDILDMQFALEQNRL- 263
+ LQK LE I IK+ K+ + +D LK+ G+ + Y+ + + ++ +L
Sbjct: 340 LETLQKNLESINKIIKQNEKIAQ--IYALD----LKSNGDYNAYYNAFNDKITIQITQLE 393
Query: 264 TLEYL--TNLSVKNLK 277
TL L T LS++NLK
Sbjct: 394 TLSALNSTYLSLQNLK 409
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.130 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,899,703
Number of Sequences: 1026957
Number of extensions: 10400398
Number of successful extensions: 38539
Number of sequences better than 1.0e-02: 29
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 38505
Number of HSP's gapped (non-prelim): 43
length of query: 477
length of database: 324,149,939
effective HSP length: 125
effective length of query: 352
effective length of database: 195,780,314
effective search space: 68914670528
effective search space used: 68914670528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 99 (42.7 bits)