BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644692|ref|NP_206862.1| hypothetical protein
[Helicobacter pylori 26695]
(86 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206862.1| (NC_000915) hypothetical protein [Helicoba... 175 8e-44
ref|NP_222779.1| (NC_000921) putative [Helicobacter pylori ... 165 1e-40
sp|P42636|TPM1_BIOGL TROPOMYOSIN 1 (TMI) (BG39) >gi|102691|... 40 0.007
ref|XP_122071.1| (XM_122071) similar to ribosomal protein S... 39 0.009
sp|P48680|LAM3_MOUSE Lamin B3 >gi|321271|pir||S28419 lamin ... 39 0.009
>ref|NP_206862.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64527 hypothetical protein HP0062 - Helicobacter pylori (strain 26695)
gb|AAD07139.1| (AE000528) H. pylori predicted coding region HP0062 [Helicobacter
pylori 26695]
Length = 86
Score = 175 bits (444), Expect = 8e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MSRVQMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKST 60
MSRVQMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKST
Sbjct: 1 MSRVQMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKST 60
Query: 61 FNEFDEAAQEQIAWLKERIRVLEEDY 86
FNEFDEAAQEQIAWLKERIRVLEEDY
Sbjct: 61 FNEFDEAAQEQIAWLKERIRVLEEDY 86
>ref|NP_222779.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71978 hypothetical protein jhp0057 - Helicobacter pylori (strain J99)
gb|AAD05641.1| (AE001445) putative [Helicobacter pylori J99]
Length = 86
Score = 165 bits (417), Expect = 1e-40
Identities = 80/86 (93%), Positives = 83/86 (96%)
Query: 1 MSRVQMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKST 60
MSRVQMDTEEVREFVGHLERFKELL EEVNSL+ HFHNLESW+DARRDKFSEVLDNLK T
Sbjct: 1 MSRVQMDTEEVREFVGHLERFKELLNEEVNSLNGHFHNLESWQDARRDKFSEVLDNLKGT 60
Query: 61 FNEFDEAAQEQIAWLKERIRVLEEDY 86
FNEF+EAAQEQIAWLKERIRVLEEDY
Sbjct: 61 FNEFNEAAQEQIAWLKERIRVLEEDY 86
>sp|P42636|TPM1_BIOGL TROPOMYOSIN 1 (TMI) (BG39)
pir||A33085 tropomyosin - bloodfluke planorb
gb|AAA27817.1| (M85199) tropomyosin [Biomphalaria glabrata]
Length = 284
Score = 39.7 bits (91), Expect = 0.007
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 9 EEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAA 68
E++ + + +E K L EE N+L N F NL++ D + +E L+++ E
Sbjct: 23 EQMEQKLRDVEETKNKLEEEFNNLQNKFSNLQNDFDTANEGLTEAQTKLEASEKHVAE-L 81
Query: 69 QEQIAWLKERIRVLEED 85
+ A L RI++LEED
Sbjct: 82 ESDTAGLNRRIQLLEED 98
>ref|XP_122071.1| (XM_122071) similar to ribosomal protein S15 - mouse [Mus musculus]
Length = 415
Score = 39.3 bits (90), Expect = 0.009
Identities = 18/57 (31%), Positives = 32/57 (55%)
Query: 25 LREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRV 81
L+++ ++ NH H LE RDKF ++LD + E +A Q+Q+A +E + +
Sbjct: 121 LQKQASAAENHIHELEEALAGERDKFRKMLDAKEQEMTEVRDAMQQQLAEYQELLDI 177
>sp|P48680|LAM3_MOUSE Lamin B3
pir||S28419 lamin B-3 - mouse
dbj|BAA02708.1| (D13455) lamin B3 [Mus musculus]
Length = 474
Score = 39.3 bits (90), Expect = 0.009
Identities = 18/57 (31%), Positives = 32/57 (55%)
Query: 25 LREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRV 81
L+++ ++ NH H LE RDKF ++LD + E +A Q+Q+A +E + +
Sbjct: 180 LQKQASAAENHIHELEEALAGERDKFRKMLDAKEQEMTEVRDAMQQQLAEYQELLDI 236
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,445,728
Number of Sequences: 1026957
Number of extensions: 1710565
Number of successful extensions: 10198
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10192
Number of HSP's gapped (non-prelim): 7
length of query: 86
length of database: 324,149,939
effective HSP length: 62
effective length of query: 24
effective length of database: 260,478,605
effective search space: 6251486520
effective search space used: 6251486520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)