BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645233|ref|NP_207403.1| hypothetical protein
[Helicobacter pylori 26695]
(160 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207403.1| (NC_000915) hypothetical protein [Helicoba... 329 6e-90
ref|NP_223273.1| (NC_000921) putative [Helicobacter pylori ... 322 7e-88
ref|NP_207847.1| (NC_000915) hypothetical protein [Helicoba... 59 2e-08
ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori ... 58 3e-08
ref|NP_207846.1| (NC_000915) hypothetical protein [Helicoba... 49 2e-05
ref|NP_223089.1| (NC_000921) putative [Helicobacter pylori ... 48 3e-05
ref|NP_208258.1| (NC_000915) hypothetical protein [Helicoba... 44 8e-04
ref|NP_224078.1| (NC_000921) putative Outer membrane protei... 40 0.007
>ref|NP_207403.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64595 hypothetical protein HP0608 - Helicobacter pylori (strain 26695)
gb|AAD07674.1| (AE000574) H. pylori predicted coding region HP0608 [Helicobacter
pylori 26695]
Length = 160
Score = 329 bits (844), Expect = 6e-90
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MVGLAPIKITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINT 60
MVGLAPIKITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINT
Sbjct: 1 MVGLAPIKITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINT 60
Query: 61 SLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTI 120
SLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTI
Sbjct: 61 SLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTI 120
Query: 121 DRHHRIELGAKIPFSKTRNSFKNPYFLESVFIHATYSYMF 160
DRHHRIELGAKIPFSKTRNSFKNPYFLESVFIHATYSYMF
Sbjct: 121 DRHHRIELGAKIPFSKTRNSFKNPYFLESVFIHATYSYMF 160
>ref|NP_223273.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71919 hypothetical protein jhp0555 - Helicobacter pylori (strain J99)
gb|AAD06127.1| (AE001487) putative [Helicobacter pylori J99]
Length = 189
Score = 322 bits (826), Expect = 7e-88
Identities = 155/160 (96%), Positives = 158/160 (97%)
Query: 1 MVGLAPIKITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINT 60
MVGLAP+KITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINT
Sbjct: 30 MVGLAPVKITPKPASDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINT 89
Query: 61 SLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTI 120
SLLSLN+DVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTI
Sbjct: 90 SLLSLNMDVLSDFYTYKKYSFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGLFNVGLGSTI 149
Query: 121 DRHHRIELGAKIPFSKTRNSFKNPYFLESVFIHATYSYMF 160
DRHHR+ELGAKIPFSKTRNSFKN YFLESVFIHA YSYMF
Sbjct: 150 DRHHRVELGAKIPFSKTRNSFKNSYFLESVFIHAAYSYMF 189
>ref|NP_207847.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64651 hypothetical protein HP1056 - Helicobacter pylori (strain 26695)
gb|AAD08108.1| (AE000613) H. pylori predicted coding region HP1056 [Helicobacter
pylori 26695]
Length = 284
Score = 58.5 bits (140), Expect = 2e-08
Identities = 44/154 (28%), Positives = 76/154 (48%), Gaps = 11/154 (7%)
Query: 15 SDSSYTAFLWGAKGGYQFAF---FKALALRGEF--SYLMAIKPTALHTINTSLLSLNIDV 69
S+ + L+G + GYQ F AL GE+ + K +L + T+ SLNID+
Sbjct: 132 SNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASYQTA--SLNIDL 189
Query: 70 LSD--FYTYKKYSFGVYGGLGIGY--FYQSNHLGMKNSSFMGYNGLFNVGLGSTIDRHHR 125
L D K+++ G++GG+G+G+ YQ+ S + + N+G+ T++ HR
Sbjct: 190 LMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEVKGYSQPNAFGLVLNLGVSMTLNLKHR 249
Query: 126 IELGAKIPFSKTRNSFKNPYFLESVFIHATYSYM 159
EL K+P K + YF + + +Y+Y+
Sbjct: 250 FELALKMPPLKETSQTFLYYFKSTNIYYISYNYL 283
>ref|NP_223088.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71939 hypothetical protein jhp0369 - Helicobacter pylori (strain J99)
gb|AAD05956.1| (AE001472) putative [Helicobacter pylori J99]
Length = 289
Score = 58.2 bits (139), Expect = 3e-08
Identities = 44/154 (28%), Positives = 76/154 (48%), Gaps = 11/154 (7%)
Query: 15 SDSSYTAFLWGAKGGYQFAF---FKALALRGEF--SYLMAIKPTALHTINTSLLSLNIDV 69
S+ + L+G + GYQ F AL GE+ + K +L + T+ SLNID+
Sbjct: 137 SNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASYQTA--SLNIDL 194
Query: 70 LSD--FYTYKKYSFGVYGGLGIGY--FYQSNHLGMKNSSFMGYNGLFNVGLGSTIDRHHR 125
L D K+++ G++GG+G+G+ YQ+ S + + N+G+ T++ HR
Sbjct: 195 LMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIRGYSQPNAFGLVLNLGVSMTLNLKHR 254
Query: 126 IELGAKIPFSKTRNSFKNPYFLESVFIHATYSYM 159
EL K+P K + YF + + +Y+Y+
Sbjct: 255 FELALKMPPLKETSQTFLYYFKSTNIYYISYNYL 288
>ref|NP_207846.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64651 hypothetical protein HP1055 - Helicobacter pylori (strain 26695)
gb|AAD08107.1| (AE000613) H. pylori predicted coding region HP1055 [Helicobacter
pylori 26695]
Length = 314
Score = 48.9 bits (115), Expect = 2e-05
Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 39/140 (27%)
Query: 55 LHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIG---YFYQSNHLGMKNSSFMGYNG- 110
L +NT LL D+ DF T KK+ GVY G GIG Y + N G +N GY+
Sbjct: 180 LGAVNTDLL---FDMPLDFKT-KKHFLGVYAGFGIGLMLYQDRPNQNG-RNLVVGGYSSP 234
Query: 111 ------------LFNVGLGSTIDRHHRIELGAKIPFSKTRNSFK---------------- 142
FNVG+ T+ R HR+E+G K+P S R +
Sbjct: 235 NFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYQNKEDDERLLV 294
Query: 143 --NPYFLESVFIHATYSYMF 160
N F S F+ Y+++F
Sbjct: 295 SANNQFKRSSFLLVNYAFIF 314
>ref|NP_223089.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71939 hypothetical protein jhp0370 - Helicobacter pylori (strain J99)
gb|AAD05955.1| (AE001472) putative [Helicobacter pylori J99]
Length = 313
Score = 48.1 bits (113), Expect = 3e-05
Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 39/140 (27%)
Query: 55 LHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIG---YFYQSNHLGMKNSSFMGYNG- 110
L +NT LL D+ DF T KK+ GVY G GIG Y + N G +N GY+
Sbjct: 179 LGAMNTDLL---FDMPLDFKT-KKHFLGVYAGFGIGLMLYQDKPNQNG-RNLIVGGYSSP 233
Query: 111 ------------LFNVGLGSTIDRHHRIELGAKIPFSKTRNSFK---------------- 142
FNVG+ T+ R HR+E+G K+P S R +
Sbjct: 234 NFLWKSLIEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAIYHNKENDERLLI 293
Query: 143 --NPYFLESVFIHATYSYMF 160
N F S F+ Y+++F
Sbjct: 294 SANNQFKRSSFLLVNYAFIF 313
>ref|NP_208258.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64703 hypothetical protein HP1467 - Helicobacter pylori (strain 26695)
gb|AAD08526.1| (AE000647) H. pylori predicted coding region HP1467 [Helicobacter
pylori 26695]
Length = 231
Score = 43.5 bits (101), Expect = 8e-04
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 27 KGGYQFAFFKALALRGEFSYLMAIKPTALHTINT------SLLSLNIDVLSDFY--TYKK 78
K G Q F K + +RG F++ + + ++L++ +DV+ +F +YK
Sbjct: 90 KTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPTNSFFTMLAVGLDVIMEFPLGSYKH 149
Query: 79 Y--SFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGL-FNVGLGSTIDRHHRIELGAKI-PF 134
Y +FG G + Y + N K+S G GL N G+ T+ HRIELG KI P
Sbjct: 150 YLGAFGGARGALVVYTDKQNFKFFKHSVVSG--GLAINGGVMLTLFLRHRIELGFKILPT 207
Query: 135 SKTRNSFKNPYFLESVFIHATYSYMF 160
++ +S K F S +A YSY F
Sbjct: 208 ARLLSSSKR--FETSPLFYAAYSYKF 231
>ref|NP_224078.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||C71816 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06941.1| (AE001559) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 231
Score = 40.4 bits (93), Expect = 0.007
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 27 KGGYQFAFFKALALRGEFSYLMAIKPTALHTINT------SLLSLNIDVLSDFY--TYKK 78
K G Q F K + +RG F++ + + ++L++ +DV+ +F +YK
Sbjct: 90 KTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSYKDPTNSFFTMLAVGLDVIMEFPLGSYKH 149
Query: 79 Y--SFGVYGGLGIGYFYQSNHLGMKNSSFMGYNGL-FNVGLGSTIDRHHRIELGAKI-PF 134
Y +FG G + Y + N K+S G GL + G+ T+ HRIELG KI P
Sbjct: 150 YLGAFGGARGALVVYTDKQNFKFFKHSVVSG--GLAISGGVMLTLFLRHRIELGFKILPT 207
Query: 135 SKTRNSFKNPYFLESVFIHATYSYMF 160
++ +S + F S +A YSY F
Sbjct: 208 ARLLSS--SSRFETSPLFYAAYSYKF 231
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.141 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,015,967
Number of Sequences: 1026957
Number of extensions: 4256583
Number of successful extensions: 7808
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7802
Number of HSP's gapped (non-prelim): 8
length of query: 160
length of database: 324,149,939
effective HSP length: 111
effective length of query: 49
effective length of database: 210,157,712
effective search space: 10297727888
effective search space used: 10297727888
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 92 (40.0 bits)