BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645236|ref|NP_207406.1| hypothetical protein
[Helicobacter pylori 26695]
         (166 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207406.1|  (NC_000915) hypothetical protein [Helicoba...   318  2e-86
ref|NP_223019.1|  (NC_000921) putative [Helicobacter pylori ...   313  4e-85
ref|NP_349994.1|  (NC_003030) Uncharactecterized conserved m...    44  9e-04
ref|NP_616530.1|  (NC_003552) conserved hypothetical protein...    44  9e-04
ref|NP_043168.1|  (NC_001675) ycf38 [Cyanophora paradoxa] >g...    40  0.010

>ref|NP_207406.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64596 hypothetical protein HP0611 - Helicobacter pylori (strain 26695)
 gb|AAD07678.1| (AE000575) H. pylori predicted coding region HP0611 [Helicobacter
           pylori 26695]
          Length = 166

 Score =  318 bits (814), Expect = 2e-86
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MLSPATFKQITLALIASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGFVSVFSSAL 60
           MLSPATFKQITLALIASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGFVSVFSSAL
Sbjct: 1   MLSPATFKQITLALIASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGFVSVFSSAL 60

Query: 61  FCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPSIGQLFIKTSIFYYLN 120
           FCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPSIGQLFIKTSIFYYLN
Sbjct: 61  FCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPSIGQLFIKTSIFYYLN 120

Query: 121 QLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR 166
           QLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR
Sbjct: 121 QLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR 166



>ref|NP_223019.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71950 hypothetical protein jhp0299 - Helicobacter pylori (strain J99)
 gb|AAD05870.1| (AE001466) putative [Helicobacter pylori J99]
          Length = 251

 Score =  313 bits (803), Expect = 4e-85
 Identities = 162/166 (97%), Positives = 165/166 (98%)

Query: 1   MLSPATFKQITLALIASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGFVSVFSSAL 60
           MLSPATFKQITLALIASRLIVVILYAFIFIVLSFY LNIITILNFKALILGF+S+FSSAL
Sbjct: 86  MLSPATFKQITLALIASRLIVVILYAFIFIVLSFYALNIITILNFKALILGFISIFSSAL 145

Query: 61  FCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPSIGQLFIKTSIFYYLN 120
           FCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLP+IGQLFIKTSIFYYLN
Sbjct: 146 FCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPNIGQLFIKTSIFYYLN 205

Query: 121 QLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR 166
           QLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR
Sbjct: 206 QLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR 251



>ref|NP_349994.1| (NC_003030) Uncharactecterized conserved membrane protein, possible
           ABC-type MDR permease [Clostridium acetobutylicum]
 gb|AAK81334.1|AE007837_12 (AE007837) Uncharactecterized conserved membrane protein, possible
           ABC-type MDR permease [Clostridium acetobutylicum]
          Length = 247

 Score = 43.5 bits (101), Expect = 9e-04
 Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 3   SPATFKQITLALIASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGFVSVFSSALFC 62
           +P +  +I L+ I S  I+  ++  I IVL  Y+LNI         I+  +++ +  LF 
Sbjct: 89  APVSKAEIYLSKIISTYILGSIFYSIIIVLGKYVLNINYGTRSTIYIIILINMLT--LFG 146

Query: 63  FCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPSIGQLFIKTSIFYYLNQL 122
            CL +    IF++E+       I+ +  +    VF P+  L  I +     S   ++ + 
Sbjct: 147 CCLGVLFCCIFKSEEGANSVLQIVIMLFIFFGGVFFPVYSLGKIVESISNLSPLKWITEC 206

Query: 123 LIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKE 163
           + +     D  + L T    ++  II  ++   +++  P+E
Sbjct: 207 IFRIIYDNDFSIYLPTIGVMLVSSIICIVIC--QIIFKPEE 245



>ref|NP_616530.1| (NC_003552) conserved hypothetical protein [Methanosarcina
           acetivorans str. C2A] [Methanosarcina acetivorans C2A]
 gb|AAM05010.1| (AE010830) conserved hypothetical protein [Methanosarcina
           acetivorans str. C2A] [Methanosarcina acetivorans C2A]
          Length = 259

 Score = 43.5 bits (101), Expect = 9e-04
 Identities = 38/150 (25%), Positives = 63/150 (41%), Gaps = 10/150 (6%)

Query: 13  ALIASRLIVVILYAFIFIVLSFYMLNIITILNFKALILGF-VSVFSSALFCFCLA----I 67
           ++I    I   LY+ +  +L      ++ I  F   I+   + V S  L  FC A    +
Sbjct: 109 SMIFGESISGFLYSLVIALLPL----VVGIFIFDTQIVNAPILVISMILTSFCFAMLGTL 164

Query: 68  FVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPSIGQLFIKTSIFYYLNQLLIKAF 127
           F A   +    ++   N + L  +    +F+P+  +P IGQ     S   Y N ++  AF
Sbjct: 165 FAAYPTETAGEVMAILNTVRLPLIFISGIFIPISSMPQIGQKIALISPLTYGNDMIGYAF 224

Query: 128 QGIDTILVLATSTFFIIGGIILFLLSANRM 157
            G      L   +  +I  II+F L+ N M
Sbjct: 225 TGNSLFSPLIDISMLVI-FIIIFHLATNYM 253



>ref|NP_043168.1| (NC_001675) ycf38 [Cyanophora paradoxa]
 sp|P48278|YC38_CYAPA Hypothetical 33.3 kDa protein ycf38
 pir||T06856 hypothetical protein ycf38 - Cyanophora paradoxa cyanelle
 gb|AAA81199.1| (U30821) ycf38 gene product [Cyanophora paradoxa]
          Length = 290

 Score = 40.0 bits (92), Expect = 0.010
 Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 9/106 (8%)

Query: 9   QITLALIASRLIVVILYAFIFIVLSFYMLNIITILN---------FKALILGFVSVFSSA 59
           ++ +A + SR  ++   AF   VLSF  +  I +           FK+LI+ F  +F   
Sbjct: 115 RLLVAPLNSRFSILFSSAFFISVLSFIQVFFIMLFGVFLGIQLPPFKSLIVSFFFLFLLI 174

Query: 60  LFCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLPS 105
           +     +I +A +      ++    ++NL  L S     PL+++PS
Sbjct: 175 IGITTFSILLALLLPTHIELIAVIFVLNLPLLFSSTALAPLDFMPS 220



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.339    0.151    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,821,010
Number of Sequences: 1026957
Number of extensions: 3076261
Number of successful extensions: 17899
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17895
Number of HSP's gapped (non-prelim): 5
length of query: 166
length of database: 324,149,939
effective HSP length: 112
effective length of query: 54
effective length of database: 209,130,755
effective search space: 11293060770
effective search space used: 11293060770
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 92 (40.0 bits)