BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645237|ref|NP_207407.1| hypothetical protein
[Helicobacter pylori 26695]
         (79 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207407.1|  (NC_000915) hypothetical protein [Helicoba...   151  1e-36
ref|NP_223019.1|  (NC_000921) putative [Helicobacter pylori ...   146  6e-35
ref|NP_228198.1|  (NC_000853) conserved hypothetical protein...    41  0.003

>ref|NP_207407.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64596 hypothetical protein HP0612 - Helicobacter pylori (strain 26695)
 gb|AAD07679.1| (AE000575) H. pylori predicted coding region HP0612 [Helicobacter
          pylori 26695]
          Length = 79

 Score =  151 bits (382), Expect = 1e-36
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MGAILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLL 60
          MGAILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLL
Sbjct: 1  MGAILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLL 60

Query: 61 IISSAIFGLTQAITSLRIA 79
          IISSAIFGLTQAITSLRIA
Sbjct: 61 IISSAIFGLTQAITSLRIA 79



>ref|NP_223019.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71950 hypothetical protein jhp0299 - Helicobacter pylori (strain J99)
 gb|AAD05870.1| (AE001466) putative [Helicobacter pylori J99]
          Length = 251

 Score =  146 bits (368), Expect = 6e-35
 Identities = 76/77 (98%), Positives = 76/77 (98%)

Query: 1  MGAILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLL 60
          MGAILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLL
Sbjct: 1  MGAILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLL 60

Query: 61 IISSAIFGLTQAITSLR 77
          IISSAIFGLTQAITS R
Sbjct: 61 IISSAIFGLTQAITSSR 77



>ref|NP_228198.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
 pir||D72384 conserved hypothetical protein - Thermotoga maritima (strain
          MSB8)
 gb|AAD35473.1|AE001718_10 (AE001718) conserved hypothetical protein [Thermotoga maritima]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 4  ILSILKLEIKSYLTNTSALFWTFIYPILMLLLLIFVFSKNTTEIFYFNNIIGLMGLLIIS 63
          ++SILK     Y    S LFW F++PIL+ L+L+ +F   ++ +   N  IGL+G   + 
Sbjct: 5  VVSILK---NDYFRTKSVLFWNFLFPILLYLILVSIFGDMSSNM---NLRIGLVGESSLV 58

Query: 64 SAIF 67
           ++F
Sbjct: 59 ESVF 62



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.334    0.147    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,600,427
Number of Sequences: 1026957
Number of extensions: 1180526
Number of successful extensions: 10005
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10002
Number of HSP's gapped (non-prelim): 4
length of query: 79
length of database: 324,149,939
effective HSP length: 55
effective length of query: 24
effective length of database: 267,667,304
effective search space: 6424015296
effective search space used: 6424015296
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 90 (39.3 bits)