BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645239|ref|NP_207409.1| hypothetical protein
[Helicobacter pylori 26695]
         (111 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207409.1|  (NC_000915) hypothetical protein [Helicoba...   215  7e-56
ref|NP_223275.1|  (NC_000921) putative [Helicobacter pylori ...   201  2e-51

>ref|NP_207409.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64596 hypothetical protein HP0614 - Helicobacter pylori (strain 26695)
 gb|AAD07688.1| (AE000576) H. pylori predicted coding region HP0614 [Helicobacter
           pylori 26695]
          Length = 111

 Score =  215 bits (548), Expect = 7e-56
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MMEHHKVHTTIQALQAKRKKLLTELAELEAEIKVSSERKSSFNISLSPSLLAEIEEIEYE 60
           MMEHHKVHTTIQALQAKRKKLLTELAELEAEIKVSSERKSSFNISLSPSLLAEIEEIEYE
Sbjct: 1   MMEHHKVHTTIQALQAKRKKLLTELAELEAEIKVSSERKSSFNISLSPSLLAEIEEIEYE 60

Query: 61  EKTSKERRINHSVLLSPSFMAKVDEYMKEKGFSNRSLLFEKALEFYMLKHP 111
           EKTSKERRINHSVLLSPSFMAKVDEYMKEKGFSNRSLLFEKALEFYMLKHP
Sbjct: 61  EKTSKERRINHSVLLSPSFMAKVDEYMKEKGFSNRSLLFEKALEFYMLKHP 111



>ref|NP_223275.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71915 hypothetical protein jhp0557 - Helicobacter pylori (strain J99)
 gb|AAD06140.1| (AE001489) putative [Helicobacter pylori J99]
          Length = 110

 Score =  201 bits (510), Expect = 2e-51
 Identities = 101/110 (91%), Positives = 107/110 (96%)

Query: 2   MEHHKVHTTIQALQAKRKKLLTELAELEAEIKVSSERKSSFNISLSPSLLAEIEEIEYEE 61
           MEHHK HTTIQALQAKRK+LLTELAELEAEIKVSSER+SSFN+SLSPSLLAEIEEIEYEE
Sbjct: 1   MEHHKAHTTIQALQAKRKRLLTELAELEAEIKVSSERRSSFNVSLSPSLLAEIEEIEYEE 60

Query: 62  KTSKERRINHSVLLSPSFMAKVDEYMKEKGFSNRSLLFEKALEFYMLKHP 111
           K SKERRI+H++LLSPSFMAKVDEYMKEKGF NRSLLFEKALEFYMLKHP
Sbjct: 61  KMSKERRIHHNLLLSPSFMAKVDEYMKEKGFPNRSLLFEKALEFYMLKHP 110



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.313    0.127    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,992,139
Number of Sequences: 1026957
Number of extensions: 1929000
Number of successful extensions: 7880
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7874
Number of HSP's gapped (non-prelim): 2
length of query: 111
length of database: 324,149,939
effective HSP length: 87
effective length of query: 24
effective length of database: 234,804,680
effective search space: 5635312320
effective search space used: 5635312320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)