BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644693|ref|NP_206863.1| hypothetical protein
[Helicobacter pylori 26695]
(496 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206863.1| (NC_000915) hypothetical protein [Helicoba... 994 0.0
ref|NP_222780.1| (NC_000921) putative [Helicobacter pylori ... 637 0.0
ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacteriu... 55 3e-06
emb|CAA50980.1| (X72090) M protein [Streptococcus pyogenes] 52 2e-05
sp|P08799|MYS2_DICDI Myosin II heavy chain, non muscle >gi|... 50 5e-05
dbj|BAA12730.1| (D85138) skeletal myosin heavy chain [Thunn... 50 6e-05
pir||S30782 integrin homolog - yeast (Saccharomyces cerevis... 49 1e-04
gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae] 49 1e-04
ref|NP_010225.1| (NC_001136) involved intracellular protein... 49 2e-04
sp|P25386|USO1_YEAST Intracellular protein transport protei... 49 2e-04
emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevis... 49 2e-04
dbj|BAB12571.1| (AB039672) myosin heavy chain [Pennahia arg... 48 2e-04
ref|NP_148112.1| (NC_000854) hypothetical protein [Aeropyru... 48 3e-04
ref|NP_201047.1| (NM_125635) chromosomal protein - like [Ar... 48 3e-04
ref|NP_499557.1| (NM_067156) Y56A3A.7.p [Caenorhabditis ele... 47 4e-04
dbj|BAC00871.1| (AB076182) myosin heavy chain [Oncorhynchus... 47 7e-04
dbj|BAA92289.1| (AB032020) myosin heavy chain [Seriola dume... 47 7e-04
gb|AAD47086.2|AF166261_1 (AF166261) p170 [Xenopus laevis] 47 7e-04
ref|NP_143635.1| (NC_000961) chromosome assembly protein [P... 46 9e-04
ref|NP_212646.1| (NC_001318) B. burgdorferi predicted codin... 46 0.001
gb|AAG53093.1|AF306547_1 (AF306547) SMC2-1 [Arabidopsis tha... 46 0.001
gb|AAK17202.1|AF335500_1 (AF335500) major plasmodial myosin... 45 0.002
pir||S52696 myosin heavy chain - rainbow trout (fragment) >... 45 0.002
ref|NP_126050.1| (NC_000868) chromosome segregation protein... 45 0.003
pir||S03166 myosin heavy chain, gizzard smooth muscle [simi... 45 0.003
sp|P10587|MYHB_CHICK Myosin heavy chain, gizzard smooth muscle 45 0.003
gb|AAK73348.1|AF165817_1 (AF165817) fast muscle specific-my... 44 0.003
ref|NP_176892.1| (NM_105392) nuclear matrix constituent pro... 44 0.003
ref|NP_561132.1| (NC_003366) probable exonuclease [Clostrid... 44 0.003
gb|AAG27593.2| (AF271730) SMC2-like condensin [Arabidopsis ... 44 0.004
ref|XP_011195.6| (XM_011195) similar to CENTROMERIC PROTEIN... 44 0.006
ref|NP_012117.1| (NC_001141) involved in translocation of m... 44 0.006
ref|NP_562248.1| (NC_003366) stage V sporulation protein R ... 44 0.006
ref|XP_018197.4| (XM_018197) similar to endosomal protein -... 44 0.006
gb|AAF49673.1| (AE003532) CG6735 gene product [Drosophila m... 44 0.006
ref|NP_003557.1| (NM_003566) early endosome antigen 1, 162k... 43 0.008
gb|AAK18793.1|AF305601_1 (AF305601) LMP1 [Borrelia burgdorf... 43 0.008
pir||S44243 endosomal protein - human >gi|475934|emb|CAA556... 43 0.008
ref|NP_127173.1| (NC_000868) hypothetical protein [Pyrococc... 43 0.008
gb|AAB47555.1| (U87231) myosin heavy chain [Gallus gallus] 43 0.008
ref|NP_212344.1| (NC_001318) surface-located membrane prote... 43 0.008
pir||S39081 myosin heavy chain, adult - chicken (fragment) 43 0.008
sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, a... 43 0.008
dbj|BAA34955.1| (AB015485) myosin heavy chain [Dugesia japo... 43 0.010
emb|CAC95143.1| (AJ416752) variable membrane protein [Mycop... 43 0.010
gb|AAK18800.1|AF305608_1 (AF305608) LMP1 [Borrelia burgdorf... 43 0.010
ref|NP_190330.1| (NM_114614) chromosome assembly protein ho... 43 0.010
gb|AAK18797.1|AF305605_1 (AF305605) LMP1 [Borrelia burgdorf... 43 0.010
gb|AAK18795.1|AF305603_1 (AF305603) LMP1 [Borrelia burgdorf... 43 0.010
gb|AAF78288.1|AF099663_1 (AF099663) merozoite surface prote... 43 0.010
>ref|NP_206863.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64527 hypothetical protein HP0063 - Helicobacter pylori (strain 26695)
gb|AAD07140.1| (AE000528) H. pylori predicted coding region HP0063 [Helicobacter
pylori 26695]
Length = 496
Score = 994 bits (2569), Expect = 0.0
Identities = 496/496 (100%), Positives = 496/496 (100%)
Query: 1 MAEWKTDTEEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIE 60
MAEWKTDTEEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIE
Sbjct: 1 MAEWKTDTEEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIE 60
Query: 61 KLRRAKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVR 120
KLRRAKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVR
Sbjct: 61 KLRRAKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVR 120
Query: 121 LLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAP 180
LLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAP
Sbjct: 121 LLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAP 180
Query: 181 PEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKE 240
PEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKE
Sbjct: 181 PEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKE 240
Query: 241 QEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNL 300
QEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNL
Sbjct: 241 QEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNL 300
Query: 301 AKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYE 360
AKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYE
Sbjct: 301 AKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYE 360
Query: 361 NDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKPAC 420
NDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKPAC
Sbjct: 361 NDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKPAC 420
Query: 421 AHHALKALEATLKNRDLGFDATELEQIAKGFIPKGYLWHFDANVLGNVALVREELLLGVK 480
AHHALKALEATLKNRDLGFDATELEQIAKGFIPKGYLWHFDANVLGNVALVREELLLGVK
Sbjct: 421 AHHALKALEATLKNRDLGFDATELEQIAKGFIPKGYLWHFDANVLGNVALVREELLLGVK 480
Query: 481 HTKGYLLWKQFLQTQN 496
HTKGYLLWKQFLQTQN
Sbjct: 481 HTKGYLLWKQFLQTQN 496
>ref|NP_222780.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71978 hypothetical protein jhp0058 - Helicobacter pylori (strain J99)
gb|AAD05642.1| (AE001445) putative [Helicobacter pylori J99]
Length = 500
Score = 637 bits (1642), Expect = 0.0
Identities = 339/506 (66%), Positives = 395/506 (77%), Gaps = 16/506 (3%)
Query: 1 MAEWKTDTEEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIE 60
MAEWKTDTEEVK+VV +CREFKRSLQEEKCSPFIKDLDSYALKIIVERRK E QL++AI
Sbjct: 1 MAEWKTDTEEVKKVVGRCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKTEMQLEKAIG 60
Query: 61 KLRRAKKKRSSFWGSF--VEGARDLLDMVREIIPPAKLGAEAC----DKVLNLMEDNIEK 114
+L++AK + ++GA +V I PPA++ A A + VL M+++ EK
Sbjct: 61 ELKKAKSNEDDAKVALRVLQGA----SVVSWIWPPARIAATAAIVAAEAVLKFMKEDTEK 116
Query: 115 WEHNVRLLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDN 174
+ NV LLERMLEIY+ QAKASA L+ AW+ +KK L FYTDKHQEFI+RL AS+AIDN
Sbjct: 117 CKRNVELLERMLEIYSNQAKASANLMNQAWEGIKKRLHFYTDKHQEFIRRLKQASDAIDN 176
Query: 175 EYNIAPPEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRIN----ASS 230
EYN P +L E DFE P I Y PKKSV++E LKDLRE+FS SLYADLK++I+ ++
Sbjct: 177 EYNFPTPGVLLEYDFERPAISYTPKKSVFNERLKDLRENFSASLYADLKDKIHHNALSND 236
Query: 231 KLDRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLG 290
L+R +EQEFEK+LED M + D DEL+ MA + QE EK+LEDLMPS LG
Sbjct: 237 DLERMIAFREQEFEKSLEDWMGAY--SYDENPNDELDRMAISKEQELEKSLEDLMPSVLG 294
Query: 291 VHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQ 350
V SY+ESL LAK CVKN K+AL FTEKIKESPND NAINEAF++LETELERATENLSQ
Sbjct: 295 VPSYNESLTLAKNRCVKNFKEALEGFTEKIKESPNDSNAINEAFDNLETELERATENLSQ 354
Query: 351 KIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAEFESVFSAIV 410
KI P+LER EN ++ L Y EFLE KE F+VDE+NPYPEEV FNE R AEF+SVFSAIV
Sbjct: 355 KIDPVLERNENYTQKALEYREFLESRKESFIVDEKNPYPEEVSFNEWRWAEFDSVFSAIV 414
Query: 411 PLEDLDKPACAHHALKALEATLKNRDLGFDATELEQIAKGFIPKGYLWHFDANVLGNVAL 470
PLEDL+K ACAHHALKAL+ATLK+ DLGFDATELEQIAKGFIP+GYLWHFDANVLGN+AL
Sbjct: 415 PLEDLNKTACAHHALKALQATLKDNDLGFDATELEQIAKGFIPRGYLWHFDANVLGNLAL 474
Query: 471 VREELLLGVKHTKGYLLWKQFLQTQN 496
VREELLLGVKHTKGY LW +FLQ QN
Sbjct: 475 VREELLLGVKHTKGYSLWTEFLQKQN 500
>ref|NP_603419.1| (NC_003454) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94718.1| (AE010564) Exonuclease SBCC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 921
Score = 54.7 bits (130), Expect = 3e-06
Identities = 98/443 (22%), Positives = 180/443 (40%), Gaps = 76/443 (17%)
Query: 9 EEVKEVVKKCREFKRSLQE-EKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKK 67
E++K++ K+ K ++++ E+ + F+K E +++E LQ+ + + K
Sbjct: 182 EKIKDLDKEITFLKENMEDKEQITNFLK-----------EEKELEKNLQDRFKNINVVSK 230
Query: 68 KRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLE 127
+ + +L ++V+ I K K LN++++NI
Sbjct: 231 NLENEIKDYETTEIELNNLVKNI----KDEENKIKKYLNILKENI--------------- 271
Query: 128 IYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNES 187
I A QAK S +V+ KS + L E RL E +DN +L E
Sbjct: 272 IEAKQAKKSKIIVKETEKSYLEYL--------EIENRLKDLRENLDN--------LLEEQ 315
Query: 188 DFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNL 247
I Y + K+L+ D +L+ I+ +S+ S+ +
Sbjct: 316 KLN---IQYQNNIEKLELSNKNLKNDI-----INLEENISKNSEKKENLESEISNLKIKE 367
Query: 248 EDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAKKNCVK 307
EDL + L DELE + +F+ +K LED + + + + L ++KK+ K
Sbjct: 368 EDLDLKLKKYISLL--DELEKLENFK----DKKLEDKLKKTTEIDILKKEL-ISKKDLFK 420
Query: 308 NCK-KALGDFTEKIKESPNDLNAINEAFNHLETE---LERATENLSQKIAPILERYENDK 363
+ + + +E +L + E E E L+++++ LS KI P L N+K
Sbjct: 421 TINIEIIEEKLSNFQELEKELKLLEEQKIIFEIEIKTLKKSSKELSDKICPFL----NEK 476
Query: 364 RQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKPACA-H 422
Q L +KE E + + + E++ + + E + V ED K
Sbjct: 477 CQNLE-----DKEAEDYFSSKISIKKEDLENLKKNIKEKTQILVEKVVFEDKKKQYFELE 531
Query: 423 HALKALEATLKNRDLGFDATELE 445
++K LE +LKN ++ EL+
Sbjct: 532 KSIKDLEISLKNEEINLKEIELD 554
>emb|CAA50980.1| (X72090) M protein [Streptococcus pyogenes]
Length = 550
Score = 51.6 bits (122), Expect = 2e-05
Identities = 56/206 (27%), Positives = 93/206 (44%), Gaps = 23/206 (11%)
Query: 203 YDEHLKDLREDFSFS---LYADLKNRINASSKLDRTTTSKE-QEFEKNLEDLMPGFRGGT 258
Y +LK+L ++F + L D ++ AS +R E + +K E+L R
Sbjct: 95 YATYLKELNDEFEQAYNELSGDGVKKLAASLMEERVALRDEIDQIKKISEELKNKLRATE 154
Query: 259 DTLSGD----ELEHMA----SFRGQEFEKNLE-DLMPSSLGVHSYDESLNLAKKNCVKNC 309
+ L ELEH A + + +E+ K++ LM H ++SL+ AK VK
Sbjct: 155 EELKNKKEERELEHAAYAVDAKKHEEYVKSMSLALMDKEESAHLLEQSLDTAKAELVKKE 214
Query: 310 KK---ALGDFTEKIKESPNDLNAINEAFNHL-------ETELERATENLSQKIAPILERY 359
++ G+ +K KE N+ A A + L + E+E+ T++L+ K A I E+
Sbjct: 215 QELQLVKGNLDQKEKELENEELAKESAISDLTEQITAKKAEVEKLTQDLAAKSAEIQEKE 274
Query: 360 ENDKRQKLGYGEFLEKEKEGFMVDEQ 385
RQ+ Y F+ + KE EQ
Sbjct: 275 AEKDRQQHMYEAFMSQYKEKVEKQEQ 300
>sp|P08799|MYS2_DICDI Myosin II heavy chain, non muscle
pir||A26655 myosin heavy chain [similarity] - slime mold (Dictyostelium
discoideum)
gb|AAA33227.1| (M14628) myosin heavy chain [Dictyostelium discoideum]
Length = 2116
Score = 50.4 bits (119), Expect = 5e-05
Identities = 107/481 (22%), Positives = 199/481 (41%), Gaps = 62/481 (12%)
Query: 12 KEVVKKCREFKRSLQEE-KCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAK---- 66
+ V +K R+ + LQEE K ++ L + + E +++ + I +L + K
Sbjct: 922 RSVEEKVRDLEEELQEEQKLRNTLEKLKKKYEEELEEMKRVNDGQSDTISRLEKIKDELQ 981
Query: 67 KKRSSFWGSFVEGARD--LLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWE---HNVRL 121
K+ SF E ++D +L+ R +L +E D + L + +K E +L
Sbjct: 982 KEVEELTESFSEESKDKGVLEKTR-----VRLQSELDDLTVRLDSETKDKSELLRQKKKL 1036
Query: 122 LERMLEIY-ATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAP 180
E + ++ A A+ +A+L + A + KK YT+ +++F + S ++ +
Sbjct: 1037 EEELKQVQEALAAETAAKLAQEA--ANKKLQGEYTELNEKFNSEVTARSNVEKSKKTLES 1094
Query: 181 PEIL--NESDFESPTI-VYNPKKSVYDEHLKDLREDFSF------SLYADLKNRINASSK 231
+ NE D E KK D L+++++ SLY DLK + + +
Sbjct: 1095 QLVAVNNELDEEKKNRDALEKKKKALDAMLEEMKDQLESTGGEKKSLY-DLKVKQESDME 1153
Query: 232 LDRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGD-ELEHMASFRGQEFEKNLEDLMPSSLG 290
R S+ Q LE + G L G+ E E +A ++ +K +E +
Sbjct: 1154 ALRNQISELQSTIAKLEKIKSTLEGEVARLQGELEAEQLAKSNVEKQKKKVELDLEDKSA 1213
Query: 291 VHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPN-DLNA------INEAFNHLETELE- 342
+ + + A K ++ L + ++ E+ N ++N+ + +FN+L+ ELE
Sbjct: 1214 QLAEETAAKQALDKLKKKLEQELSEVQTQLSEANNKNVNSDSTNKHLETSFNNLKLELEA 1273
Query: 343 --RATENLSQK-------IAPILERYENDKRQKLGYGE---FLEKEKEGFM------VDE 384
+A + L +K + + E+ E +K+QK + LEKE V
Sbjct: 1274 EQKAKQALEKKRLGLESELKHVNEQLEEEKKQKESNEKRKVDLEKEVSELKDQIEEEVAS 1333
Query: 385 QNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKPACAHHALKALEATLKNRDLGFDATEL 444
+ E E L E + ++ +V D + LK L+A KN +L A E
Sbjct: 1334 KKAVTEAKNKKESELDEIKRQYADVVSSRDK-----SVEQLKTLQA--KNEELRNTAEEA 1386
Query: 445 E 445
E
Sbjct: 1387 E 1387
Score = 43.1 bits (100), Expect = 0.008
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 25/210 (11%)
Query: 168 ASEAIDNEYNIAPPEILNESDFESPTI--VYNPKKSVYDEHLKDLREDFSFSLYADLKNR 225
A EA E I ++ +E D + + + N K+SV +E ++DL E+
Sbjct: 888 ALEAQKRELEIRVEDMESELDEKKLALENLQNQKRSV-EEKVRDLEEE------------ 934
Query: 226 INASSKLDRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLM 285
+ KL T ++++E+ LE++ G +DT+S LE + E +K +E+L
Sbjct: 935 LQEEQKLRNTLEKLKKKYEEELEEMKRVNDGQSDTIS--RLEKIK----DELQKEVEEL- 987
Query: 286 PSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERAT 345
S S D+ + +K V+ + L D T ++ D + + LE EL++
Sbjct: 988 TESFSEESKDK--GVLEKTRVR-LQSELDDLTVRLDSETKDKSELLRQKKKLEEELKQVQ 1044
Query: 346 ENLSQKIAPILERYENDKRQKLGYGEFLEK 375
E L+ + A L + +K+ + Y E EK
Sbjct: 1045 EALAAETAAKLAQEAANKKLQGEYTELNEK 1074
>dbj|BAA12730.1| (D85138) skeletal myosin heavy chain [Thunnus thynnus]
Length = 786
Score = 50.1 bits (118), Expect = 6e-05
Identities = 79/358 (22%), Positives = 143/358 (39%), Gaps = 62/358 (17%)
Query: 16 KKCREFKRSLQEEKCSPF-----IKDLDSYALKIIVERRKIEHQLQEA---IEKLRRAKK 67
K CR + L E K + DL+ ++ E + Q++E + +L R K+
Sbjct: 97 KMCRTIEDQLSELKAKNDEHVRQLNDLNGQRARLQTENGEFSRQIEEKDALVSQLTRGKQ 156
Query: 68 KRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLE 127
++ + +L + E I K N + ++ H+ LL E
Sbjct: 157 -------AYTQQIEELKRHIEEEI-----------KAKNALAHAVQSARHDCDLLR---E 195
Query: 128 IYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNES 187
Y + +A EL G K+ + + T + I+R EA + +A
Sbjct: 196 QYEEEQEAKGELQRGMSKANSEVAQWRTKYETDAIQRTEELEEA---KKKLAQ----RLQ 248
Query: 188 DFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNL 247
D E N K + ++ + L+ + L D++ + ++ LD+ K++ F+K L
Sbjct: 249 DAEESIEAVNSKCASLEKTKQRLQGEVE-DLMIDVERANSLAANLDK----KQRNFDKVL 303
Query: 248 EDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAK--KNC 305
D + G L G + E S + F+ +SY+E+L+ + K
Sbjct: 304 ADWKQKYEEGQSELEGAQKE-ARSLSTELFKMK-----------NSYEEALDHLETMKRE 351
Query: 306 VKNCKKALGDFTEKIKESPNDLNAINEAFNHLETE-------LERATENLSQKIAPIL 356
KN ++ + D TE+I E+ ++ + +A H+ETE LE A L + A IL
Sbjct: 352 NKNLQQEISDLTEQIGETGKSIHELEKAKKHVETEKTEIQTALEEAEGTLEHEEAKIL 409
>pir||S30782 integrin homolog - yeast (Saccharomyces cerevisiae)
Length = 1726
Score = 49.3 bits (116), Expect = 1e-04
Identities = 97/438 (22%), Positives = 179/438 (40%), Gaps = 68/438 (15%)
Query: 10 EVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKI---EHQLQEAIEKLRRAK 66
++KE+ KK + SL E IK ++S +KI + + E ++ E +KL+ ++
Sbjct: 1161 QIKELKKKNETNEASLLES-----IKSIESETVKIKELQDECNFKEKEVSELEDKLKASE 1215
Query: 67 KKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERML 126
K S + L++ +E ++ E D ++ +EK + + E+
Sbjct: 1216 DKNSKY-----------LELQKE----SEKIKEELDAKTTELKIQLEKVTNLSKAKEKSE 1260
Query: 127 EIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKR---LNYASEAIDNEY----NIA 179
+ K S+E + A + ++K + K+Q F K LN S I EY N
Sbjct: 1261 SELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTL 1320
Query: 180 PPEIL---NESDFESPTIVYN----PKKSVYDEHLKDLREDFSFSLYADLKNRINASSKL 232
E++ NE++ ++ I K S+ ++ L + +++ SL ++ + + ++
Sbjct: 1321 EDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRN 1380
Query: 233 DRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDE-----LEHMASFRGQEFEKNLE----- 282
D S E++ +++LE L R ++ + E LE +S E EK+ E
Sbjct: 1381 DEKLLSIERDSKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKL 1440
Query: 283 ---------DLMPSSLGVHSYDESLNLAKKNC---VKNCKKALGDFTEKIKESPNDLNAI 330
+L S + DE L +KK+ +KN + D +I ES D+ +
Sbjct: 1441 ESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEEL 1500
Query: 331 N-----EAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQ 385
EA + E E + N +Q+ + + KL E K+K+ + Q
Sbjct: 1501 KSKLRIEAKSSSELETVKQELNNAQEKIRVNAEENTVLKSKLEDIERELKDKQAEIKSNQ 1560
Query: 386 NPYPEEVRFNELRLAEFE 403
EE RL E E
Sbjct: 1561 ----EEKELLTSRLKELE 1574
>gb|AAB00143.1| (L03188) putative [Saccharomyces cerevisiae]
Length = 1015
Score = 49.3 bits (116), Expect = 1e-04
Identities = 97/438 (22%), Positives = 179/438 (40%), Gaps = 68/438 (15%)
Query: 10 EVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKI---EHQLQEAIEKLRRAK 66
++KE+ KK + SL E IK ++S +KI + + E ++ E +KL+ ++
Sbjct: 450 QIKELKKKNETNEASLLES-----IKSIESETVKIKELQDECNFKEKEVSELEDKLKASE 504
Query: 67 KKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERML 126
K S + L++ +E ++ E D ++ +EK + + E+
Sbjct: 505 DKNSKY-----------LELQKE----SEKIKEELDAKTTELKIQLEKVTNLSKAKEKSE 549
Query: 127 EIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKR---LNYASEAIDNEY----NIA 179
+ K S+E + A + ++K + K+Q F K LN S I EY N
Sbjct: 550 SELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTL 609
Query: 180 PPEIL---NESDFESPTIVYN----PKKSVYDEHLKDLREDFSFSLYADLKNRINASSKL 232
E++ NE++ ++ I K S+ ++ L + +++ SL ++ + + ++
Sbjct: 610 EDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRN 669
Query: 233 DRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDE-----LEHMASFRGQEFEKNLE----- 282
D S E++ +++LE L R ++ + E LE +S E EK+ E
Sbjct: 670 DEKLLSIERDSKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKL 729
Query: 283 ---------DLMPSSLGVHSYDESLNLAKKNC---VKNCKKALGDFTEKIKESPNDLNAI 330
+L S + DE L +KK+ +KN + D +I ES D+ +
Sbjct: 730 ESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEEL 789
Query: 331 N-----EAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQ 385
EA + E E + N +Q+ + + KL E K+K+ + Q
Sbjct: 790 KSKLRIEAKSSSELETVKQELNNAQEKIRVNAEENTVLKSKLEDIERELKDKQAEIKSNQ 849
Query: 386 NPYPEEVRFNELRLAEFE 403
EE RL E E
Sbjct: 850 ----EEKELLTSRLKELE 863
>ref|NP_010225.1| (NC_001136) involved intracellular protein transport, coiled-coil
protein necessary for protein transport from ER to Golgi;
Uso1p [Saccharomyces cerevisiae]
pir||S67593 transport protein USO1 - yeast (Saccharomyces cerevisiae)
emb|CAA98621.1| (Z74106) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1790
Score = 48.5 bits (114), Expect = 2e-04
Identities = 98/438 (22%), Positives = 179/438 (40%), Gaps = 68/438 (15%)
Query: 10 EVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKI---EHQLQEAIEKLRRAK 66
++KE+ KK + SL E IK ++S +KI + + E ++ E +KL+ ++
Sbjct: 1231 QIKELKKKNETNEASLLES-----IKSVESETVKIKELQDECNFKEKEVSELEDKLKASE 1285
Query: 67 KKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERML 126
K S + L++ +E ++ E D ++ +EK + + E+
Sbjct: 1286 DKNSKY-----------LELQKE----SEKIKEELDAKTTELKIQLEKITNLSKAKEKSE 1330
Query: 127 EIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKR---LNYASEAIDNEY----NIA 179
+ K S+E + A + ++K + K+Q F K LN S I EY N
Sbjct: 1331 SELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTL 1390
Query: 180 PPEIL---NESDFESPTIVYN----PKKSVYDEHLKDLREDFSFSLYADLKNRINASSKL 232
E++ NE++ ++ I K S+ ++ L + +++ SL ++ + + ++
Sbjct: 1391 EDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRN 1450
Query: 233 DRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDE-----LEHMASFRGQEFEKNLE----- 282
D S E++ +++LE L R ++ + E LE +S E EK+ E
Sbjct: 1451 DEKLLSIERDNKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKL 1510
Query: 283 ---------DLMPSSLGVHSYDESLNLAKKNC---VKNCKKALGDFTEKIKESPNDLNAI 330
+L S + DE L +KK+ +KN + D +I ES D+ +
Sbjct: 1511 ESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEEL 1570
Query: 331 N-----EAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQ 385
EA + E E + N +Q+ I + KL E K+K+ + Q
Sbjct: 1571 KSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQ 1630
Query: 386 NPYPEEVRFNELRLAEFE 403
EE RL E E
Sbjct: 1631 ----EEKELLTSRLKELE 1644
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1
emb|CAA38253.1| (X54378) Uso1 protein [Saccharomyces cerevisiae]
Length = 1790
Score = 48.5 bits (114), Expect = 2e-04
Identities = 98/438 (22%), Positives = 179/438 (40%), Gaps = 68/438 (15%)
Query: 10 EVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKI---EHQLQEAIEKLRRAK 66
++KE+ KK + SL E IK ++S +KI + + E ++ E +KL+ ++
Sbjct: 1231 QIKELKKKNETNEASLLES-----IKSVESETVKIKELQDECNFKEKEVSELEDKLKASE 1285
Query: 67 KKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERML 126
K S + L++ +E ++ E D ++ +EK + + E+
Sbjct: 1286 DKNSKY-----------LELQKE----SEKIKEELDAKTTELKIQLEKITNLSKAKEKSE 1330
Query: 127 EIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKR---LNYASEAIDNEY----NIA 179
+ K S+E + A + ++K + K+Q F K LN S I EY N
Sbjct: 1331 SELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTL 1390
Query: 180 PPEIL---NESDFESPTIVYN----PKKSVYDEHLKDLREDFSFSLYADLKNRINASSKL 232
E++ NE++ ++ I K S+ ++ L + +++ SL ++ + + ++
Sbjct: 1391 EDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRN 1450
Query: 233 DRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDE-----LEHMASFRGQEFEKNLE----- 282
D S E++ +++LE L R ++ + E LE +S E EK+ E
Sbjct: 1451 DEKLLSIERDNKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKL 1510
Query: 283 ---------DLMPSSLGVHSYDESLNLAKKNC---VKNCKKALGDFTEKIKESPNDLNAI 330
+L S + DE L +KK+ +KN + D +I ES D+ +
Sbjct: 1511 ESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEEL 1570
Query: 331 N-----EAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQ 385
EA + E E + N +Q+ I + KL E K+K+ + Q
Sbjct: 1571 KSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQ 1630
Query: 386 NPYPEEVRFNELRLAEFE 403
EE RL E E
Sbjct: 1631 ----EEKELLTSRLKELE 1644
>emb|CAA98620.1| (Z74105) ORF YDL058w [Saccharomyces cerevisiae]
Length = 1268
Score = 48.5 bits (114), Expect = 2e-04
Identities = 98/438 (22%), Positives = 179/438 (40%), Gaps = 68/438 (15%)
Query: 10 EVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKI---EHQLQEAIEKLRRAK 66
++KE+ KK + SL E IK ++S +KI + + E ++ E +KL+ ++
Sbjct: 709 QIKELKKKNETNEASLLES-----IKSVESETVKIKELQDECNFKEKEVSELEDKLKASE 763
Query: 67 KKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERML 126
K S + L++ +E ++ E D ++ +EK + + E+
Sbjct: 764 DKNSKY-----------LELQKE----SEKIKEELDAKTTELKIQLEKITNLSKAKEKSE 808
Query: 127 EIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKR---LNYASEAIDNEY----NIA 179
+ K S+E + A + ++K + K+Q F K LN S I EY N
Sbjct: 809 SELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTL 868
Query: 180 PPEIL---NESDFESPTIVYN----PKKSVYDEHLKDLREDFSFSLYADLKNRINASSKL 232
E++ NE++ ++ I K S+ ++ L + +++ SL ++ + + ++
Sbjct: 869 EDELIRLQNENELKAKEIDNTRSELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITRN 928
Query: 233 DRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDE-----LEHMASFRGQEFEKNLE----- 282
D S E++ +++LE L R ++ + E LE +S E EK+ E
Sbjct: 929 DEKLLSIERDNKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEMMKKL 988
Query: 283 ---------DLMPSSLGVHSYDESLNLAKKNC---VKNCKKALGDFTEKIKESPNDLNAI 330
+L S + DE L +KK+ +KN + D +I ES D+ +
Sbjct: 989 ESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEEL 1048
Query: 331 N-----EAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQ 385
EA + E E + N +Q+ I + KL E K+K+ + Q
Sbjct: 1049 KSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIERELKDKQAEIKSNQ 1108
Query: 386 NPYPEEVRFNELRLAEFE 403
EE RL E E
Sbjct: 1109 ----EEKELLTSRLKELE 1122
>dbj|BAB12571.1| (AB039672) myosin heavy chain [Pennahia argentata]
Length = 1930
Score = 48.1 bits (113), Expect = 2e-04
Identities = 78/358 (21%), Positives = 141/358 (38%), Gaps = 62/358 (17%)
Query: 16 KKCREFKRSLQEEKCSPF-----IKDLDSYALKIIVERRKIEHQLQEA---IEKLRRAKK 67
K CR + L E K I D+ +++ E + Q++E + +L R K+
Sbjct: 1242 KMCRTLEDQLSELKTKNDENVRQINDMSGQRARLLTENGEFTRQVEEKEALVSQLTRGKQ 1301
Query: 68 KRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLE 127
+F + +L + E + K N + ++ H+ LL E
Sbjct: 1302 -------AFTQQIEELKRQIEEEV-----------KAKNALAHGVQSARHDCDLLREQFE 1343
Query: 128 IYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNES 187
+ +A AEL G K+ + + + + I+R EA + +A
Sbjct: 1344 ---EEQEAKAELQRGMSKANSEVAQWRSKYETDAIQRTEELEEA---KKKLAQ----RLQ 1393
Query: 188 DFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNL 247
D E N K + ++ + L+ + L D++ ++ LD+ K++ F+K L
Sbjct: 1394 DAEEQIEAVNSKCASLEKTKQRLQSEVE-DLMIDVERANGLAANLDK----KQRNFDKVL 1448
Query: 248 EDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAK--KNC 305
+ + G L G + E A G E K +SY+ESL+ + K
Sbjct: 1449 AEWKQKYEEGQAELEGAQKE--ARSLGTELFKMK----------NSYEESLDQLETMKRE 1496
Query: 306 VKNCKKALGDFTEKIKESPNDLNAINEAFNHLETE-------LERATENLSQKIAPIL 356
KN ++ + D TE+I E+ ++ + +A +ETE LE A L + + IL
Sbjct: 1497 NKNLQQEISDLTEQIGETGKSIHELEKAKKQVETEKSEIQTALEEAEGTLEHEESKIL 1554
>ref|NP_148112.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||H72552 hypothetical protein APE1708 - Aeropyrum pernix (strain K1)
dbj|BAA80709.1| (AP000062) 791aa long hypothetical protein [Aeropyrum pernix]
Length = 791
Score = 47.8 bits (112), Expect = 3e-04
Identities = 65/342 (19%), Positives = 149/342 (43%), Gaps = 49/342 (14%)
Query: 38 DSYALKIIVERRKIEHQLQEAIEKLRRAKKKRSSF-----------WGSFVEGARDLLDM 86
++ A +++ E ++E ++ E +E+L ++K +S G+ ++ A LL
Sbjct: 396 ETEAAEVLAELTEVEIEIGELMEELETLQQKAASANQGEVQEILDEAGALIDRASSLLAE 455
Query: 87 VREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYATQAKASAELVEGAWKS 146
R ++ ++ AEA +K+ E +EK + + E +LE+ A+ + E +E A ++
Sbjct: 456 ARSLLDEGRI-AEAKEKIAQA-EAALEKADSKLDTAEAILEVVEEYAERAREAIEEAEEA 513
Query: 147 VKKSLDFY--------TDKHQEFIKRLNYASEAIDNEYNIAPPEILNESDFESPTIVYNP 198
+ K+ ++ +E + RL A E ++ A E + + ++
Sbjct: 514 LAKAEAKLQLAAQLSGSEAVEEALNRLEEAKEKLE-----AAKEAYSNGRYGEAIVLAEE 568
Query: 199 KKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLEDLMPGFRGGT 258
S+ +E K+L E + + +N +L + ++ ++ +ED+
Sbjct: 569 AASIAEE-AKELAEKAIEAAQEAVSEVLNQVEEL----LDRVKDLQEEIEDIA------- 616
Query: 259 DTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHS-YDESLNLAKKNCVKNCKKALGDFT 317
E A +E + +++++ S +E+ +LAK+ + ++ LG+
Sbjct: 617 ------EKAREAGVLTEEIQAAIDEVLGKLDQARSLLEEADSLAKEGDIDGARQKLGEAR 670
Query: 318 EKIKESPNDL----NAINEAFNHLETELERATENLSQKIAPI 355
+ I+E+ + + + + +A L EL R E L +K A +
Sbjct: 671 DVIEEAVSMVRDIRSMVEQAIGDLIDELRRLIEELREKAAEL 712
>ref|NP_201047.1| (NM_125635) chromosomal protein - like [Arabidopsis thaliana]
dbj|BAB11491.1| (AB015469) chromosome assembly protein homolog [Arabidopsis
thaliana]
Length = 1175
Score = 47.8 bits (112), Expect = 3e-04
Identities = 93/432 (21%), Positives = 170/432 (38%), Gaps = 87/432 (20%)
Query: 25 LQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRSSFWGSFVEGARDLL 84
+ E K +K L+ K+ + ++H++ A+EKLR+ K + + E L
Sbjct: 173 MYENKKEAALKTLEKKQTKVDEINKLLDHEILPALEKLRKEKSQYMQWANGNAE-----L 227
Query: 85 DMVR------------EIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYATQ 132
D +R +I A LG L ++ EK + ++ E+ ++ TQ
Sbjct: 228 DRLRRFCIAFEYVQAEKIRDNAVLGVGEMKAKLGKIDAETEKTQEEIQEFEKQIKA-LTQ 286
Query: 133 AKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESDFESP 192
AK ++ + G K++ + +D + +LN + +L E +
Sbjct: 287 AKEAS--MGGEVKTLSEKVDSLAQEMTRESSKLNNKEDT-----------LLGEKE---- 329
Query: 193 TIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLEDLMP 252
N +K V+ ++DL++ +K R A K E+ DL
Sbjct: 330 ----NVEKIVHS--IEDLKK--------SVKERAAAVKK-----------SEEGAADLKQ 364
Query: 253 GFRGGTDTLSGDELEHMASFRGQ---EFEKNLED-LMPSSLGVHSYDESLNLAK---KNC 305
F+ + TL E EH G+ + EK LED L + + V + L K ++C
Sbjct: 365 RFQELSTTLEECEKEHQGVLAGKSSGDEEKCLEDQLRDAKIAVGTAGTELKQLKTKIEHC 424
Query: 306 VKNCKKALGDFTEKIKES---PNDLNAINEAFNHLETELERATENLSQKIAPILERYEND 362
K K+ K++E+ N+L A H++ LE N Q +E E D
Sbjct: 425 EKELKERKSQLMSKLEEAIEVENELGARKNDVEHVKKALESIPYNEGQ-----MEALEKD 479
Query: 363 KRQKLGYGEFLEKEKEGF---MVDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKPA 419
+ +L + LE + G + + Q Y + VR ++ + V + ++ ++D
Sbjct: 480 RGAELEVVQRLEDKVRGLSAQLANFQFTYSDPVR--NFDRSKVKGVVAKLIKVKD----- 532
Query: 420 CAHHALKALEAT 431
++ ALE T
Sbjct: 533 --RSSMTALEVT 542
>ref|NP_499557.1| (NM_067156) Y56A3A.7.p [Caenorhabditis elegans]
emb|CAB60519.2| (AL132860) cDNA EST yk188b3.5 comes from this gene~cDNA EST
yk210f4.3 comes from this gene~cDNA EST yk210f4.5 comes
from this gene~cDNA EST yk253d8.5 comes from this
gene~cDNA EST yk432e5.5 comes from this gene~cDNA EST
yk463a2.5 comes from this gene~c>
Length = 457
Score = 47.4 bits (111), Expect = 4e-04
Identities = 82/340 (24%), Positives = 146/340 (42%), Gaps = 34/340 (10%)
Query: 105 LNLMEDNIEKWEHNVRLLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKH-QEFIK 163
L++ +D +K E + + L+ E Q + + E E A K+ ++ + QE +
Sbjct: 90 LDIAKDFEKKIEDDAQKLKEQKE---KQEEDATEEDENAEKTPEEQANSEVIAELQEALL 146
Query: 164 RLNYASEAIDNEYNIAPPEILNESDFESPTIVYNPKKSVYDEHLKDLRE--DFSFSLYAD 221
L SEA +A E LNE E + K ++ + K ++ D + + A+
Sbjct: 147 ELKQVSEAA-----VAASE-LNEKLVERLQLTKRKKSAMMEVRAKKAKDLDDVATKVRAE 200
Query: 222 LKNRINASSKLDRTTTSKEQEF-EKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKN 280
+ RIN + L +TTT +E+E E + L G + GTD E++ A + +
Sbjct: 201 VMERINKMAALKKTTTKQEKELKELQKQCLQLGLQLGTD--ENREIDPAAEEALLDDNQR 258
Query: 281 LEDLMPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETE 340
+ ++ + DE ++ +N KK + EK KE N L I E +
Sbjct: 259 VPVIVETQEKPDLNDEEKEKRREEIRENIKKEM----EK-KEQVNTL--IREKLASMNAR 311
Query: 341 LERATENLSQKIAPILERYENDKRQKL-----GYGEFLEKEKEGFMVDEQNPYPEEVRFN 395
+R Q+I +LE+ E++K +KL ++ + EG + + P P +
Sbjct: 312 RKRL-----QEIRKMLEKQEHEK-EKLDAAISNSAVAVQNDGEGIALTPETPRPSQEDEA 365
Query: 396 ELRLAEFESVFSA-IVPLEDLDKPACAHHALKALEATLKN 434
E A +V SA + ED+D+ K+L+ L+N
Sbjct: 366 EAPAAAETTVVSAPVAASEDIDEEEDGEVTEKSLDDILEN 405
>dbj|BAC00871.1| (AB076182) myosin heavy chain [Oncorhynchus keta]
Length = 1937
Score = 46.6 bits (109), Expect = 7e-04
Identities = 78/360 (21%), Positives = 142/360 (38%), Gaps = 66/360 (18%)
Query: 16 KKCREFKRSLQEEKCSPF-----IKDLDSYALKIIVERRKIEHQLQEA---IEKLRRAKK 67
K CR + L E K + D+ +++ E + QL+E + +L R K+
Sbjct: 1249 KMCRTLEDQLSELKTKNDENVRQVNDISGQRARLLTENGEFGRQLEEKEALVSQLTRGKQ 1308
Query: 68 KRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLE 127
+F + +L + E + K N + ++ H+ LL E
Sbjct: 1309 -------AFTQQVEELKRQIEEEV-----------KAKNALAHGVQSARHDCDLLREQFE 1350
Query: 128 IYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNES 187
+ +A AEL G K+ + + T + I+R EA + +A
Sbjct: 1351 ---EEQEAKAELQRGMSKANSEVAQWRTKYETDAIQRTEELEEA---KKKLAQ----RLQ 1400
Query: 188 DFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNL 247
D E N K S ++ + L+ + L D++ ++ LD+ K++ F+K L
Sbjct: 1401 DAEETIEATNSKCSSLEKTKQRLQGEVE-DLMIDVERANAMAANLDK----KQRNFDKVL 1455
Query: 248 EDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLN----LAKK 303
+ + G L G + E + L L +SY+E+L+ L ++
Sbjct: 1456 AEWKQKYEEGQAELEGAQKE------ARSMSTELFKLK------NSYEEALDHLETLKRE 1503
Query: 304 NCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETE-------LERATENLSQKIAPIL 356
N KN ++ + D TE+I E+ ++ + +A +ETE LE A L + + IL
Sbjct: 1504 N--KNLQQEISDLTEQIGETGKSIHELEKAKKTVETEKSEIQTALEEAEGTLEHEESKIL 1561
>dbj|BAA92289.1| (AB032020) myosin heavy chain [Seriola dumerili]
Length = 1938
Score = 46.6 bits (109), Expect = 7e-04
Identities = 77/358 (21%), Positives = 144/358 (39%), Gaps = 62/358 (17%)
Query: 16 KKCREFKRSLQEEKCSPF-----IKDLDSYALKIIVERRKIEHQLQEA---IEKLRRAKK 67
K CR + L E K + D++++ ++ E + QL+E + +L R K+
Sbjct: 1251 KMCRTLEDQLSELKAKNDENVRQLNDINAHKARLQTENGEFSRQLEEKEALVSQLTRGKQ 1310
Query: 68 KRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLE 127
+F + +L + E + K N + ++ H+ LL E
Sbjct: 1311 -------AFTQQIEELKRHIEEEV-----------KAKNALAHAVQSARHDCDLLREQFE 1352
Query: 128 IYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNES 187
+ +A AEL G K+ + + T + I+R EA + +A
Sbjct: 1353 ---EEQEAKAELQRGMSKANSEVAQWRTKYETDAIQRTEELEEA---KKKLAQ----RLQ 1402
Query: 188 DFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNL 247
D E N K + ++ + L+ + L D++ + ++ LD+ K++ F+K L
Sbjct: 1403 DAEESIEAVNSKCASLEKTKQRLQGEVE-DLMIDVERANSLAANLDK----KQRNFDKVL 1457
Query: 248 EDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAK--KNC 305
+ + G L G + E S + F+ +SY+E+L+ + K
Sbjct: 1458 AEWKQKYEEGQAELEGAQKE-ARSLSTELFKMK-----------NSYEEALDHLETMKRE 1505
Query: 306 VKNCKKALGDFTEKIKESPNDLNAINEAFNHLETE-------LERATENLSQKIAPIL 356
KN ++ + D TE+I E+ ++ + +A +ETE LE A L + A IL
Sbjct: 1506 NKNLQQEISDLTEQIGETGKSIHELEKAKKTVETEKTEIQSALEEAEGTLEHEEAKIL 1563
>gb|AAD47086.2|AF166261_1 (AF166261) p170 [Xenopus laevis]
Length = 1335
Score = 46.6 bits (109), Expect = 7e-04
Identities = 65/282 (23%), Positives = 106/282 (37%), Gaps = 42/282 (14%)
Query: 102 DKVLNLMEDNIEKWEHNVRL-LERMLEIYATQAKASAELVE-------------GAWKSV 147
D+++NL EDNI K V L LER +I+ Q K + +E G K
Sbjct: 562 DQIVNL-EDNINKEHAEVLLALERSKDIHQDQQKELMKQIEHLQLQLEMKNLHAGEQKHT 620
Query: 148 KKSLDFYTDKHQEFIKRLNY---------------ASEAIDNEYNIAPPEILNESDFESP 192
L T H++ ++ +N+ S A+ + N E S ES
Sbjct: 621 ITILQQETLWHEQQLESVNHLLTQARKELEIQTKNTSAAMKSLQNQVEVESAKVSQLESA 680
Query: 193 TIVYNPKKSVYDEHLKDLREDFSFSLYAD------LKNRINASSKLDRTTTSKEQEFEKN 246
V + ++Y L+D RE F + L+N I ++ + T+ + ++
Sbjct: 681 LTVCKEELALYLHELEDNREQFENQIKTKSEELWCLQNEIKLRTQSLQETSEENVRLQQT 740
Query: 247 LEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAKKNCV 306
L+ + GT + E H E EK + L S E + K+ +
Sbjct: 741 LQQQQHMLQQGTGRIGELEDHH------TELEKQVSKLEFELEKQRSMSEDMLQRTKDSL 794
Query: 307 KNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENL 348
K LG TE+++E + LN + H L + E L
Sbjct: 795 HAANKELGLKTEEVQELCSTLNQVKLELKHTNVTLLQMEEEL 836
>ref|NP_143635.1| (NC_000961) chromosome assembly protein [Pyrococcus horikoshii]
pir||F71190 probable chromosome assembly protein - Pyrococcus horikoshii
Length = 1179
Score = 46.2 bits (108), Expect = 9e-04
Identities = 75/384 (19%), Positives = 161/384 (41%), Gaps = 55/384 (14%)
Query: 7 DTEEVKEVVKKCREFKRSLQEEKCS--PFIKDLDSYALKIIVERRKIEHQLQEAIEKLRR 64
DT+E+KE V+ R K SL+ E S +K L++ + ++ + +E ++ + L +
Sbjct: 662 DTKELKEKVENLRIMKESLEGEVNSLRVKLKALENQSFELRIRMSDVEKEISLISKDLEK 721
Query: 65 AKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLER 124
K+ S + R + ++ D+ ++ +D + K + + LE+
Sbjct: 722 LIKEEESLRSEIEDSERKIAEI---------------DETISKKKDEVAKLKGRIERLEK 766
Query: 125 MLEIYATQAKASAELVEGAWKSVK-KSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEI 183
+ + K + E E + K + ++ K +E + R+ E++++ N E+
Sbjct: 767 RRD----KLKKALENPEAREVTEKIREVEREIAKLREELSRVEGKLESLNSRLN---DEL 819
Query: 184 LNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEF 243
+ P+K+ +E ++ L + LK IN + + ++ T K ++
Sbjct: 820 I-------------PRKASLEEEIEGLVNKIN-----ALKANINENEEALKSLTEKLEKL 861
Query: 244 EKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGV------HSYDES 297
+K ++ R +ELE + +E EK + + V +S +S
Sbjct: 862 KKEEGEIYS--RIEEQKKKKEELERKVAELREEKEKISRRIQELRIEVNTLKVRNSQLKS 919
Query: 298 LNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILE 357
L + K + +K+ K + + I++ P+DL + + +E E+ +A E ++ K E
Sbjct: 920 LLMEKNSQLKHFSK---EVIKSIRDIPSDLEGLKKEIEKMEEEI-KALEPVNMKAIEDFE 975
Query: 358 RYENDKRQKLGYGEFLEKEKEGFM 381
E + E LE EK+ +
Sbjct: 976 VVERRYLELKSKRERLEAEKDSII 999
>ref|NP_212646.1| (NC_001318) B. burgdorferi predicted coding region BB0512 [Borrelia
burgdorferi]
pir||G70163 hypothetical protein BB0512 - Lyme disease spirochete
gb|AAC66876.1| (AE001153) B. burgdorferi predicted coding region BB0512 [Borrelia
burgdorferi]
Length = 2166
Score = 45.8 bits (107), Expect = 0.001
Identities = 77/385 (20%), Positives = 161/385 (41%), Gaps = 44/385 (11%)
Query: 37 LDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRSSFWGSFVEGARDLLDMVREIIPPAKL 96
LDS +K ++I + E I R + SS + +++ EI ++
Sbjct: 1000 LDSLNVKFNDINKEINGKYNEVISNYRGYSENISSKLEN---------EIMHEIENLSRR 1050
Query: 97 GAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTD 156
+ D + M++N++K + + + + +E + + K + E + K ++ Y
Sbjct: 1051 LTDRIDSLSKGMDENLQKLKESFDVSKYQVEKFELKVKDLTDDGEAKINKLVKEIEQYYK 1110
Query: 157 KHQEFIKRLNYASEAIDNEYNIAPP---EILNE--SDFESPTIVYNPKKSVYDEHLKDLR 211
E + ++Y IDN+ A EI NE ++ ES + N +Y E K +
Sbjct: 1111 SRLE--EAIDYR-RTIDNDIMQAKERFGEITNELKNNIESKSEFLN---DLYKERFKLIE 1164
Query: 212 EDFSFSLYADLKNRINASSKLD----RTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDELE 267
+F L A SK+ +T TS ++ + + ++ F E+
Sbjct: 1165 SNFEERYSTFLIESEGAISKIRDEIYKTLTSNDENLQIKISEMDQNF----------EII 1214
Query: 268 HMASFRGQEFEKNLEDLMPSSLG-VHSYDESLNLAKKNCVKN-----CKKALGDFTEKIK 321
S EFEK L+D + G ++S + + +KN KK + I
Sbjct: 1215 EQRSKDILEFEKELQDKIKDCYGFINSQFGEIKAGVEENIKNHFDVCIKKVNTLIDDDIV 1274
Query: 322 ESPNDLNAINEAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEKEGFM 381
+ N+++ ++ +E+ + +NL+ K++ +++ ND K Y E E+ EG
Sbjct: 1275 KYENEIHKRIDSLKSIESTFDSIEKNLNDKVSGCIDKIANDFNLK--YIELEERCNEG-Q 1331
Query: 382 VDEQNPYPEEVR-FNELRLAEFESV 405
++ +N +++ + L L++++ +
Sbjct: 1332 LNLENKIDNKIKAIDNLALSQYDGL 1356
>gb|AAG53093.1|AF306547_1 (AF306547) SMC2-1 [Arabidopsis thaliana]
Length = 1175
Score = 45.8 bits (107), Expect = 0.001
Identities = 93/432 (21%), Positives = 169/432 (38%), Gaps = 87/432 (20%)
Query: 25 LQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRSSFWGSFVEGARDLL 84
+ E K +K L+ K+ + ++H++ A+EKLR+ K + + E L
Sbjct: 173 MYENKKEAALKTLEKKQTKVDEINKLLDHEILPALEKLRKKKSQYMQWANGNAE-----L 227
Query: 85 DMVR------------EIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYATQ 132
D +R +I A LG L ++ EK + ++ E+ ++ TQ
Sbjct: 228 DRLRRFCIAFEYVQAEKIRDNAVLGVGEMKAKLGKIDAETEKTQEEIQEFEKQIKA-LTQ 286
Query: 133 AKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESDFESP 192
AK ++ + G K++ + +D + +LN + +L E +
Sbjct: 287 AKEAS--MGGEVKTLSEKVDSLAQEMTRESSKLNNKEDT-----------LLGEKE---- 329
Query: 193 TIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLEDLMP 252
N +K V+ ++DL++ +K R A K E+ DL
Sbjct: 330 ----NVEKIVHS--IEDLKK--------SVKERAAAVKK-----------SEEGAADLKQ 364
Query: 253 GFRGGTDTLSGDELEHMASFRGQ---EFEKNLED-LMPSSLGVHSYDESLNLAK---KNC 305
F+ + TL E EH G+ + EK LED L + + V + L K ++C
Sbjct: 365 RFQELSTTLEECEKEHQGVLAGKSSGDEEKCLEDQLRDAKIAVGTAGTELKQLKTKIEHC 424
Query: 306 VKNCKKALGDFTEKIKES---PNDLNAINEAFNHLETELERATENLSQKIAPILERYEND 362
K K+ K +E+ N+L A H++ LE N Q +E E D
Sbjct: 425 EKELKERKSQLMSKREEAIEVENELGARKNDVEHVKKALESIPYNEGQ-----MEALEKD 479
Query: 363 KRQKLGYGEFLEKEKEGF---MVDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKPA 419
+ +L + LE + G + + Q Y + VR ++ + V + ++ ++D
Sbjct: 480 RGAELEVVQRLEDKVRGLSAQLANFQFTYSDPVR--NFDRSKVKGVVAKLIKVKD----- 532
Query: 420 CAHHALKALEAT 431
++ ALE T
Sbjct: 533 --RSSMTALEVT 542
>gb|AAK17202.1|AF335500_1 (AF335500) major plasmodial myosin heavy chain [Physarum
polycephalum]
Length = 2148
Score = 45.1 bits (105), Expect = 0.002
Identities = 84/411 (20%), Positives = 159/411 (38%), Gaps = 49/411 (11%)
Query: 5 KTDTEEVKEVVKKCREFKRSLQEE---------KCSPFIKDLDSYALKIIVERRKIEHQL 55
++D EE+K++ + ++ QE+ ++D ++ A KI +RR +E L
Sbjct: 1363 QSDYEELKKIAESDAAARQKAQEQVKILELQNADSQSLVQDAEAAAEKIERQRRTLEADL 1422
Query: 56 QEAIEKLRRAKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKW 115
Q+ EKL +K R F + +L +I ++ + L E+N +
Sbjct: 1423 QDVQEKLDEEQKARVRFQKQLAKTDEELRQAKLKIDDLTNATSDQYIALKRLQEENSNQH 1482
Query: 116 EHNVRL---------LERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLN 166
L L + E+ KA E A V+K +K ++
Sbjct: 1483 RELEALDEKTAQWNRLRKQAEVQLEDLKAQLEEAISAKLKVEKQKRDLENKVEDL----- 1537
Query: 167 YASEAIDNEYNIAPPEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRI 226
S A N N+ P E+ + + K+ ++ K E+ L D+ +
Sbjct: 1538 -ESAADVNSANVHPDELRKKQQ----EVDELKKQLAAEQERKTKDEEVKRQLRKDVTTQE 1592
Query: 227 NASSKLDRTTTSKE---QEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQE------- 276
A + +R + E ++ E LEDL ++ + + E +A RG+E
Sbjct: 1593 EAIEEYERNKLNAERIRKKLENELEDLKASLE--SEQILRKKAELLAKPRGKEGATEIKP 1650
Query: 277 --FEKNLEDL--MPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPND----LN 328
K+ ED + L V + A + + ++AL ++++ D +
Sbjct: 1651 TVSSKSDEDFKKLTEELAVLKTELDGEKAWRGNAEKRERALRAENDELRGQLEDEVTAKD 1710
Query: 329 AINEAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEKEG 379
N+A LE E+E + L + + L+ E KR+K E ++++ EG
Sbjct: 1711 KTNKAKRALEVEVEELKDQLDE-VEESLQEAEEFKRRKDLELEEVKRKLEG 1760
Score = 43.5 bits (101), Expect = 0.006
Identities = 79/428 (18%), Positives = 169/428 (39%), Gaps = 48/428 (11%)
Query: 15 VKKCREFKRSLQEE--KCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRSSF 72
VK + K+ +++E +++L + +R +E QL +A L + + ++
Sbjct: 1156 VKALADLKQKVEQELEDLRRQVEELKKAVSNLEKIKRTLEAQLNDANNALAESNAENANL 1215
Query: 73 WGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYATQ 132
+ DL+ + +++ + A A DK + ++++ + N+ +
Sbjct: 1216 TKLKKKLEEDLVALNQKLAEEQRDKA-ALDKAKKKADQDVKELKSNLENVSASRATLDQN 1274
Query: 133 AKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESDFESP 192
KA+ E +E A + ++ Q+ ++L A + ++ E + ++ +E
Sbjct: 1275 LKATEEKLENAKVEL--------EQEQKTKQQLEKAKKLLETELHAVQGQLDDEKKGRD- 1325
Query: 193 TIVYNPKKSVYDEHLKDLREDFSFSLYA-----DLKNRINAS-------SKLDRTTTSKE 240
+ + K+S + L DLREDF +L A D K+++ + ++ D K
Sbjct: 1326 --IVDRKRSDLESELADLREDFEEALSARKVIGDAKSKLQSDYEELKKIAESDAAARQKA 1383
Query: 241 QEFEKNLE-------DLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHS 293
QE K LE L+ + + A Q+ ++ L++ + +
Sbjct: 1384 QEQVKILELQNADSQSLVQDAEAAAEKIERQRRTLEADL--QDVQEKLDEEQKARVRFQK 1441
Query: 294 Y----DESLNLAK------KNCVKNCKKALGDFTEKIKESPNDLNAINEA---FNHLETE 340
DE L AK N + AL E+ +L A++E +N L +
Sbjct: 1442 QLAKTDEELRQAKLKIDDLTNATSDQYIALKRLQEENSNQHRELEALDEKTAQWNRLRKQ 1501
Query: 341 LERATENLSQKIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLA 400
E E+L ++ + ++QK +E + V+ N +P+E+R + +
Sbjct: 1502 AEVQLEDLKAQLEEAISAKLKVEKQKRDLENKVEDLESAADVNSANVHPDELRKKQQEVD 1561
Query: 401 EFESVFSA 408
E + +A
Sbjct: 1562 ELKKQLAA 1569
>pir||S52696 myosin heavy chain - rainbow trout (fragment)
emb|CAA88724.1| (Z48794) myosin heavy chain [Oncorhynchus mykiss]
Length = 698
Score = 45.1 bits (105), Expect = 0.002
Identities = 75/360 (20%), Positives = 137/360 (37%), Gaps = 66/360 (18%)
Query: 16 KKCREFKRSLQEEKCSPF-----IKDLDSYALKIIVERRKIEHQLQEA---IEKLRRAKK 67
K CR + L E K + D+ +++ E + QL+E + +L R K+
Sbjct: 10 KMCRTLEDQLSELKTKNDENVRQVNDISGQRARLLTENGEFGRQLEEKEALVSQLTRGKQ 69
Query: 68 KRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLE 127
+F + +L + E + K N + ++ H+ LL E
Sbjct: 70 -------AFTQQVEELKRAIEEEV-----------KAKNALAHGVQSARHDCDLLREQFE 111
Query: 128 IYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNES 187
+ +A AEL G K+ + + T + I+R EA ++
Sbjct: 112 ---EEQEAKAELQRGMSKANSEVAQWRTKYETDAIQRTEELEEA--------KKKLAQRL 160
Query: 188 DFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNL 247
TI K E K + L D++ ++ LD+ K++ F+K L
Sbjct: 161 QEAEETIEATNSKCASLEKTKQRLQGEVEDLMIDVERANALAANLDK----KQRNFDKVL 216
Query: 248 EDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLN----LAKK 303
+ + G L G + E S + F+ +SY+E+L+ L ++
Sbjct: 217 AEWKQKYEEGQAELEGAQKE-ARSMSTELFKMK-----------NSYEEALDHLETLKRE 264
Query: 304 NCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETE-------LERATENLSQKIAPIL 356
N KN ++ + + TE+I E+ ++ + +A +ETE LE A L + + IL
Sbjct: 265 N--KNLQQEISELTEQIGETGKSIHELEKAKKTVETEKSEIQTALEEAEGTLEHEESKIL 322
>ref|NP_126050.1| (NC_000868) chromosome segregation protein (smc1) [Pyrococcus
abyssi]
pir||B75150 chromosome segregation protein (smc1) PAB2109 - Pyrococcus abyssi
(strain Orsay)
emb|CAB49281.1| (AJ248284) chromosome segregation protein (smc1) [Pyrococcus
abyssi]
Length = 1177
Score = 44.7 bits (104), Expect = 0.003
Identities = 80/383 (20%), Positives = 152/383 (38%), Gaps = 53/383 (13%)
Query: 7 DTEEVKEVVKKCREFKRSLQEE--KCSPFIKDLDSYALKIIVERRKIEHQ---LQEAIEK 61
DT E+KE V+K + K +L+ E ++ L++ ++ ++ +IE + L IEK
Sbjct: 662 DTRELKERVEKLKLRKEALEAEINSLKVELRGLENQGFELRIKMSEIEKEITLLTRDIEK 721
Query: 62 LRRAKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRL 121
L ++ +++ I ++ G E D++++ + I K +
Sbjct: 722 LLSEER------------------IIKSEIEDSQKGIEEIDRIIHEKKGEIAKLRGKIER 763
Query: 122 LERMLEIYATQAKASAELVEGAWKSVK-KSLDFYTDKHQEFIKRLNYASEAIDNEYN--I 178
LER + + K + E E + K + ++ K +E + R+ E++++ N +
Sbjct: 764 LERKRD----KLKKALENPEAREVTEKIREVEGEIGKLREELSRVESRLESLNSRLNEEL 819
Query: 179 APPEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTS 238
P + E + E N K+ E+ + L+ LK ++ + + S
Sbjct: 820 IPRKASLEEEIEGLVNKINALKANIAENEEVLK---------GLKGKLEELKAKEESVHS 870
Query: 239 KEQEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESL 298
K E+ + E+L R L ++ E S R QEF L + + S
Sbjct: 871 KISEYRRKREELEKEIR----ELRKEKEE--LSKRMQEFRIEANTLRVRNTQLRSILNEK 924
Query: 299 NLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILER 358
N ++ K + I+E P DL + +E E+ R+ E ++ K E
Sbjct: 925 NSQLRHFPK-------EVIRSIREIPLDLEKLKREIEEMEEEI-RSLEPVNMKAIEDFEV 976
Query: 359 YENDKRQKLGYGEFLEKEKEGFM 381
E + E LE EKE +
Sbjct: 977 VERRYLELKSKREKLEAEKESII 999
>pir||S03166 myosin heavy chain, gizzard smooth muscle [similarity] - chicken
emb|CAA29793.1| (X06546) MHC (AA 1-1979) [Gallus gallus]
Length = 1979
Score = 44.7 bits (104), Expect = 0.003
Identities = 75/381 (19%), Positives = 163/381 (42%), Gaps = 48/381 (12%)
Query: 9 EEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKK 68
+E++++ +K L E+ I +L + ++ + K E +LQ A+ +L +
Sbjct: 1057 QELEKIKRKLEGESSDLHEQ-----IAELQAQIAELKAQLAKKEEELQAALARLEDETSQ 1111
Query: 69 RSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEI 128
+++ ++ R+L + ++ + A +K D E+ E LE L+
Sbjct: 1112 KNNA----LKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1167
Query: 129 YATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESD 188
ATQ + A+ E +K++L+ T H+ ++ + ++ A E+ + +
Sbjct: 1168 TATQQELRAKR-EQEVTVLKRALEEETRTHEAQVQEMR-------QKHTQAVEELTEQLE 1219
Query: 189 FESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLE 248
+ K+ D+ + L +D ADL N I + S+ + K+++ E L+
Sbjct: 1220 ------QFKRAKANLDKTKQTLEKD-----NADLANEIRSLSQAKQDVEHKKKKLEVQLQ 1268
Query: 249 DLMPGFRGGTDTLS---------GDELEHMASFRGQEFEKNLEDLMP-SSLGVHSYDESL 298
DL + G + E+E++ S + KN++ ++LG D
Sbjct: 1269 DLQSKYSDGERVRTELNEKVHKLQIEVENVTSLLNEAESKNIKLTKDVATLGSQLQDTQE 1328
Query: 299 NLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILER 358
L ++ K + T K+++ +D N++ E L+ E+E A +NL + I+ + +
Sbjct: 1329 LLQEETRQKL------NVTTKLRQLEDDKNSLQE---QLDEEVE-AKQNLERHISTLTIQ 1378
Query: 359 YENDKRQKLGYGEFLEKEKEG 379
+ K++ + +E +EG
Sbjct: 1379 LSDSKKKLQEFTATVETMEEG 1399
>sp|P10587|MYHB_CHICK Myosin heavy chain, gizzard smooth muscle
Length = 1979
Score = 44.7 bits (104), Expect = 0.003
Identities = 75/381 (19%), Positives = 163/381 (42%), Gaps = 48/381 (12%)
Query: 9 EEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKK 68
+E++++ +K L E+ I +L + ++ + K E +LQ A+ +L +
Sbjct: 1057 QELEKIKRKLEGESSDLHEQ-----IAELQAQIAELKAQLAKKEEELQAALARLEDETSQ 1111
Query: 69 RSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEI 128
+++ ++ R+L + ++ + A +K D E+ E LE L+
Sbjct: 1112 KNNA----LKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1167
Query: 129 YATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESD 188
ATQ + A+ E +K++L+ T H+ ++ + ++ A E+ + +
Sbjct: 1168 TATQQELRAKR-EQEVTVLKRALEEETRTHEAQVQEMR-------QKHTQAVEELTEQLE 1219
Query: 189 FESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLE 248
+ K+ D+ + L +D ADL N I + S+ + K+++ E L+
Sbjct: 1220 ------QFKRAKANLDKTKQTLEKD-----NADLANEIRSLSQAKQDVEHKKKKLEVQLQ 1268
Query: 249 DLMPGFRGGTDTLS---------GDELEHMASFRGQEFEKNLEDLMP-SSLGVHSYDESL 298
DL + G + E+E++ S + KN++ ++LG D
Sbjct: 1269 DLQSKYSDGERVRTELNEKVHKLQIEVENVTSLLNEAESKNIKLTKDVATLGSQLQDTQE 1328
Query: 299 NLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILER 358
L ++ K + T K+++ +D N++ E L+ E+E A +NL + I+ + +
Sbjct: 1329 LLQEETRQKL------NVTTKLRQLEDDKNSLQE---QLDEEVE-AKQNLERHISTLTIQ 1378
Query: 359 YENDKRQKLGYGEFLEKEKEG 379
+ K++ + +E +EG
Sbjct: 1379 LSDSKKKLQEFTATVETMEEG 1399
>gb|AAK73348.1|AF165817_1 (AF165817) fast muscle specific-myosin heavy chain [Danio rerio]
Length = 1935
Score = 44.3 bits (103), Expect = 0.003
Identities = 86/405 (21%), Positives = 164/405 (40%), Gaps = 75/405 (18%)
Query: 16 KKCREFKRSLQEEKCSPF-----IKDLDSYALKIIVERRKIEHQLQEA---IEKLRRAKK 67
K CR + L E K I DL + ++ E + QL+E + +L R K+
Sbjct: 1249 KMCRTVEDQLSEIKSKNDENLRQINDLSAQRARLQTENGEFGRQLEEKEALVSQLTRGKQ 1308
Query: 68 KRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLE 127
+F + +L + E + K N + ++ H+ LL E
Sbjct: 1309 -------AFTQQIEELKRQIEEEV-----------KAKNALAHAVQSARHDCDLLREQFE 1350
Query: 128 IYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNES 187
+ +A AEL G K+ + + T + I+R E +++ +A + L E+
Sbjct: 1351 ---EEQEAKAELQRGMSKANSEVAQWRTKYETDAIQR---TEELEESKKKLA--QRLQEA 1402
Query: 188 DFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNL 247
+ + + N K + ++ + L+ + DL + ++ L K++ F+K L
Sbjct: 1403 EEQIEAV--NSKCASLEKTKQRLQGEVE-----DLMIDVERANALAANLDKKQRNFDKVL 1455
Query: 248 EDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLN----LAKK 303
+ + G L G + E S + F+ +SY+E+L+ L ++
Sbjct: 1456 AEWKQKYEEGQAELEGAQKE-ARSLSTELFKMK-----------NSYEETLDQLETLKRE 1503
Query: 304 NCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETE-------LERATENLSQKIAPIL 356
N KN ++ + D TE++ E+ ++ + +A +ETE LE A L + + IL
Sbjct: 1504 N--KNLQQEISDLTEQLGETGKSIHVLEKAKKTVETEKAEIQTALEEAEGTLEHEESKIL 1561
Query: 357 ERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAE 401
R + + Q G + EK+ M E+++ N R+ E
Sbjct: 1562 -RVQLELNQVKGEIDRKLAEKDEEM--------EQIKRNSQRVTE 1597
>ref|NP_176892.1| (NM_105392) nuclear matrix constituent protein 1, putative
[Arabidopsis thaliana]
Length = 1132
Score = 44.3 bits (103), Expect = 0.003
Identities = 78/402 (19%), Positives = 167/402 (41%), Gaps = 43/402 (10%)
Query: 1 MAEWKTDTEEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVER---RKIEHQLQE 57
+AE + +V+ K+ + SLQ E+ S +I + ++ + +R R+ E +LQE
Sbjct: 183 LAEVSRKSSDVERKAKEVEARESSLQRERFS-YIAEREADEATLSKQREDLREWERKLQE 241
Query: 58 AIEKLRRA------KKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDN 111
E++ ++ ++ R++ ++ L+ ++ I A L + + ++ +
Sbjct: 242 GEERVAKSQMIVKQREDRANESDKIIKQKGKELEEAQKKIDAANLAVKKLEDDVSSRIKD 301
Query: 112 IEKWEHNVRLLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQ--------EFIK 163
+ E +L++ +E A + +A E +E K + L D+HQ EF
Sbjct: 302 LALREQETDVLKKSIETKARELQALQEKLEAREKMAVQQL---VDEHQAKLDSTQREFEL 358
Query: 164 RLNYASEAIDNEYNIAPPEI-LNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADL 222
+ ++ID+ E+ E++++ ++ D L+ +E + D
Sbjct: 359 EMEQKRKSIDDSLKSKVAEVEKREAEWKHMEEKVAKREQALDRKLEKHKEKEN-----DF 413
Query: 223 KNRINASSKLDRTTTSKEQEFE----KNLED--LMPGFRGGTDTLSGDELEHMASFRGQE 276
R+ S ++ S+E+ E K LED ++ + + +SG+ ++ E
Sbjct: 414 DLRLKGISGREKALKSEEKALETEKKKLLEDKEIILNLKALVEKVSGENQAQLS-----E 468
Query: 277 FEKNLEDLMPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNH 336
K ++L + Y L K ++ C+ E +++ DL A E+F
Sbjct: 469 INKEKDELRVTEEERSEYLR-LQTELKEQIEKCRSQ----QELLQKEAEDLKAQRESFEK 523
Query: 337 LETELERATENLSQKIAPILERYENDKRQKLGYGEFLEKEKE 378
EL+ + ++ I ++ E +R E L+KEK+
Sbjct: 524 EWEELDERKAKIGNELKNITDQKEKLERHIHLEEERLKKEKQ 565
>ref|NP_561132.1| (NC_003366) probable exonuclease [Clostridium perfringens]
dbj|BAB79922.1| (AP003185) probable exonuclease [Clostridium perfringens]
Length = 1175
Score = 44.3 bits (103), Expect = 0.003
Identities = 67/302 (22%), Positives = 117/302 (38%), Gaps = 53/302 (17%)
Query: 122 LERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPP 181
L L + K ++EG K + + +E IK +N + ++ +
Sbjct: 184 LSSKLSFEIRKEKDKMNVLEGQLKGYEGISEEALKAKEEEIKEINLSIKSKE-------- 235
Query: 182 EILNE--SDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSK 239
E+LN+ +FE V+N +K +YD+ +++ K R+ S+K D+
Sbjct: 236 ELLNKIKKEFEEAEKVWNTQKELYDKRIEEESLVSRSEEIKSFKERVEISNKADKVIV-- 293
Query: 240 EQEFEKNLEDLMPGFRGGTDTLS--GDELEHMASFRG------QEFEKNLEDLMPSSLGV 291
F NLE+++ S +LE + + R +EF K E+ +P
Sbjct: 294 ---FINNLEEILKEINKEDLKFSELNKKLEELINLREENKLKFEEFTKKKEEKLP----- 345
Query: 292 HSYDESLNLAKKNCVKNCK--------KALG-DFTEKIKESPNDLNAINEAFNHLETELE 342
L L K+ +++ K KA G E K+ D + + N +E +
Sbjct: 346 -----DLRLKKEKLLESQKERDILFQIKADGVKLKEACKKIFEDRSKCDTKLNSIEENEK 400
Query: 343 RATENLSQKIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPE-EVRFNELRLAE 401
R E L +K E K + + EF K G + N Y + +FNE++ E
Sbjct: 401 RLNEELKEK--------EERKEELFVHEEFKNKINSGLFI--LNSYESLDKQFNEIKSEE 450
Query: 402 FE 403
E
Sbjct: 451 VE 452
>gb|AAG27593.2| (AF271730) SMC2-like condensin [Arabidopsis thaliana]
gb|AAK58634.1|AF271731_1 (AF271731) SMC2-like condensin [Arabidopsis thaliana]
Length = 1177
Score = 43.9 bits (102), Expect = 0.004
Identities = 91/425 (21%), Positives = 168/425 (39%), Gaps = 75/425 (17%)
Query: 27 EEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRSSFWGSFVEGARDLLDM 86
E K +K L+ K+ + ++H++ A+EKLR+ K + + E LD
Sbjct: 175 ENKKEAALKTLEKKQTKVDEINKLLDHEILPALEKLRKEKSQYMQWANGNAE-----LDR 229
Query: 87 VR------EIIPPAKLGAEACDKV-LNLMEDNIEKWEHNVRLLERMLEIYATQAKASAEL 139
+R E + K+ A V + M+ + K + + ++ + Q KA +
Sbjct: 230 LRRFCIAFEYVQAEKIRDNAVLGVGVGEMKAKLGKIDAETEKTQEEIQEFEKQIKALTQA 289
Query: 140 VEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESDFESPTIVYNPK 199
E + K+L ++K + + S ++N+ + +L E + N +
Sbjct: 290 KEASMGGEVKTL---SEKVDSLAQEMTRESSKLNNKED----TLLGEKE--------NVE 334
Query: 200 KSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLEDLMPGFRGGTD 259
K V+ ++DL++ +K R A K E+ DL F+ +
Sbjct: 335 KIVHS--IEDLKK--------SVKERAAAVKK-----------SEEGAADLKQRFQELST 373
Query: 260 TLSGDELEHMASFRGQ---EFEKNLED-LMPSSLGVHSYDESLNLAK---KNCVKNCKKA 312
TL E EH G+ + EK LED L + + V + L K ++C K K+
Sbjct: 374 TLEECEKEHQGVLAGKSSGDEEKCLEDQLRDAKIAVGTAGTELKQLKTKIEHCEKELKER 433
Query: 313 LGDFTEKIKES---PNDLNAINEAFNHLETELERATENLSQKIAPILERYENDKRQKLGY 369
K +E+ N+L A H++ LE N Q +E E D+ +L
Sbjct: 434 KSQLMSKREEAIEVENELGARKNDVEHVKKALESIPYNEGQ-----MEALEKDRGAELEV 488
Query: 370 GEFLEKEKEGF---MVDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKPACAHHALK 426
+ LE + G + + Q Y + VR ++ + V + ++ ++D ++
Sbjct: 489 VQRLEDKVRGLSAQLANFQFTYSDPVR--NFDRSKVKGVVAKLIKVKD-------RSSMT 539
Query: 427 ALEAT 431
ALE T
Sbjct: 540 ALEVT 544
>ref|XP_011195.6| (XM_011195) similar to CENTROMERIC PROTEIN E (CENP-E PROTEIN) [Homo
sapiens]
Length = 2665
Score = 43.5 bits (101), Expect = 0.006
Identities = 89/455 (19%), Positives = 182/455 (39%), Gaps = 60/455 (13%)
Query: 5 KTDTEEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRR 64
+T+ + +++ + E RS+ +E+ DL S + VER +++ L+E I +
Sbjct: 1664 ETENIRLTQILHENLEEMRSVTKER-----DDLRSVEETLKVERDQLKENLRETITR-DL 1717
Query: 65 AKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLER 124
K++ ++ ++ +D +R I+ K L D ++ + ++ R
Sbjct: 1718 EKQEELKIVHMHLKEHQETIDKLRGIVSEKTNEISNMQKDLEHSNDALKAQDLKIQEELR 1777
Query: 125 MLEIYATQAKASAELVEGA-------WKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYN 177
+ ++ + + + + + G +++K L+ K QE I+ L NE+
Sbjct: 1778 IAHMHLKEQQETIDKLRGIVSEKTDKLSNMQKDLENSNAKLQEKIQELKA------NEHQ 1831
Query: 178 -IAPPEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTT 236
I + +NE+ KK E LK +D S +L SKL+
Sbjct: 1832 LITLKKDVNETQ----------KKVSEMEQLKKQIKDQSLTL-----------SKLEIEN 1870
Query: 237 TSKEQEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDE 296
+ Q+ +NLE+ M D L +E + +++L++ L + +
Sbjct: 1871 LNLAQKLHENLEE-MKSVMKERDNLR--RVEETLKLERDQLKESLQETKARDLEIQQELK 1927
Query: 297 SLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPIL 356
+ + K K+ + EKI E ++ I + + + EL++ + L +K +L
Sbjct: 1928 TARMLSKEH----KETVDKLREKISEKTIQISDIQKDLDKSKDELQKKIQELQKKELQLL 1983
Query: 357 ERYE--NDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAEFESVFSAIVPLED 414
E N +K+ E L+K+ E + + +R+ F+ LE+
Sbjct: 1984 RVKEDVNMSHKKINEMEQLKKQFEA----------QNLSMQSVRMDNFQLTKKLHESLEE 2033
Query: 415 LDKPACAHHALKALEATLKNRDLGFDATELEQIAK 449
+ A L+ ++ +LK F AT E IA+
Sbjct: 2034 IRIVAKERDELRRIKESLKMERDQFIATLREMIAR 2068
>ref|NP_012117.1| (NC_001141) involved in translocation of macromolecules between the
nucleoplasm and the NPC; Mlp2p [Saccharomyces
cerevisiae]
sp|P40457|YIO9_YEAST HYPOTHETICAL 195.1 KD PROTEIN IN DNA43-UBI1 INTERGENIC REGION
pir||S48385 hypothetical protein YIL149c - yeast (Saccharomyces cerevisiae)
emb|CAA86129.1| (Z38059) orf, len: 1679, CAI: 0.16, similar to MLP1_YEAST Q02455
MYOSIN-LIKE PROTEIN [Saccharomyces cerevisiae]
Length = 1679
Score = 43.5 bits (101), Expect = 0.006
Identities = 85/413 (20%), Positives = 171/413 (40%), Gaps = 56/413 (13%)
Query: 11 VKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRS 70
++++ KK +F+RS +E L ++V+ +I+ Q I KL++ + S
Sbjct: 24 LRKLYKKIAKFERSEEEVT-----------KLNVLVD--EIKSQYYSRISKLKQLLDESS 70
Query: 71 SFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYA 130
+ E L D + E + +A K L++ + + + R+ E +I+
Sbjct: 71 EQKNTAKEELNGLKDQLNEERSRYRREIDALKKQLHVSHEAMREVNDEKRVKEEY-DIWQ 129
Query: 131 TQAKASAELVEGAWKSVK----KSLDFYTD----KHQEFIKRLNYASEAIDNEYNIAPPE 182
++ + + L + K K K ++ K +L Y + + E + +
Sbjct: 130 SRDQGNDSLNDDLNKENKLLRRKLMEMENILQRCKSNAISLQLKYDTSVQEKELMLQSKK 189
Query: 183 ILNE--SDFESPTIVYNPKKSVYDEHLKD----LREDFSFSLYADLKNRINASSKLDRTT 236
++ E S F T+ KS + E+L++ ++ ++ S++ K +N + +L ++
Sbjct: 190 LIEEKLSSFSKKTLTEEVTKSSHVENLEEKLYQMQSNYE-SVFTYNKFLLNQNKQLSQSV 248
Query: 237 TSKEQEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDE 296
K E KNL+D T S ++ E + +KN+ DL+ S L D
Sbjct: 249 EEKVLEM-KNLKD----------TASVEKAEFS---KEMTLQKNMNDLLRSQLTSLEKDC 294
Query: 297 SLNLAKKNCVKNCKK--------ALGDFTEKIKESPNDLNAINEAFNHL--ETELERATE 346
SL +KN +C+ L D ++++S N+ + E E T
Sbjct: 295 SLRAIEKNDDNSCRNPEHTDVIDELIDTKLRLEKSKNECQRLQNIVMDCTKEEEATMTTS 354
Query: 347 NLSQKIAPILERYENDKRQ--KLGYGEF-LEKEKEGFMVDEQNPYPEEVRFNE 396
+S + + + KRQ K +F L+ + E F+++ ++ PE + F E
Sbjct: 355 AVSPTVGKLFSDIKVLKRQLIKERNQKFQLQNQLEDFILELEHKTPELISFKE 407
>ref|NP_562248.1| (NC_003366) stage V sporulation protein R [Clostridium perfringens]
dbj|BAB81038.1| (AP003190) stage V sporulation protein R [Clostridium perfringens]
Length = 449
Score = 43.5 bits (101), Expect = 0.006
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 21/133 (15%)
Query: 43 KIIVERRKIEHQLQEAIEKLRRAKKKRSSFWGSFVEGARDLLDMVREIIPP--AKLGAEA 100
++I E+R+ + + ++ + ++ KK+ R +LD + EI+PP +K+
Sbjct: 169 RVIGEKRESQDEQRKRVLEIFNKKKEN-----------RGILDSMEEILPPDISKIPLNP 217
Query: 101 CDKVLNLMED--NIEKWEHNVRLLERMLEIYATQAKASAELVEGAWKS-----VKKSLDF 153
D ++ + D N+E+WE N+ + R +Y + +++ W S + K L+
Sbjct: 218 DDDIIQFIIDYSNLEEWEKNILKIVRRESLYFL-PQIETKIMNEGWASYWHYNILKKLNL 276
Query: 154 YTDKHQEFIKRLN 166
H EF+KR N
Sbjct: 277 PQGLHLEFLKRHN 289
>ref|XP_018197.4| (XM_018197) similar to endosomal protein - human [Homo sapiens]
Length = 1411
Score = 43.5 bits (101), Expect = 0.006
Identities = 56/350 (16%), Positives = 142/350 (40%), Gaps = 20/350 (5%)
Query: 8 TEEVKEVVKKCREFKRSLQEEK-----CSPFIKDLDSYALKIIVERRKIEHQLQEAIEKL 62
T ++++ + C + + L+E K ++L+ K+ + +++ ++A++ L
Sbjct: 694 TAKLQDKQEHCSQLESHLKEYKEKYLSLEQKTEELEGQIKKLEADSLEVKASKEQALQDL 753
Query: 63 RRAKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLL 122
++ ++ + E ++ L +M +EI+ +L + + L ++ + K E ++L
Sbjct: 754 QQQRQLNTDLELRATELSKQL-EMEKEIVSSTRLDLQKKSEALESIKQKLTKQEEEKKIL 812
Query: 123 ERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPE 182
++ E + + K E + ++ L + + + L+ + + ++
Sbjct: 813 KQDFETLSQETKIQHEELNNRIQTTVTELQKVKMEKEALMTELSTVKDKLS---KVSDSL 869
Query: 183 ILNESDFESPTIVYNPKKSVYD--EHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKE 240
++S+FE K ++ D + K+L+ + LK + L++ +
Sbjct: 870 KNSKSEFEKEN--QKGKAAILDLEKTCKELKHQLQVQMENTLKEQKELKKSLEKEKEASH 927
Query: 241 QEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNL 300
Q + L + +TL +E E Q+ + N+ +L SS E+L
Sbjct: 928 Q-LKLELNSMQEQLIQAQNTLKQNEKEE------QQLQGNINELKQSSEQKKKQIEALQG 980
Query: 301 AKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQ 350
K V + +++ ++ +L A E + L+ E++ E Q
Sbjct: 981 ELKIAVLQKTELENKLQQQLTQAAQELAAEKEKISVLQNNYEKSQETFKQ 1030
>gb|AAF49673.1| (AE003532) CG6735 gene product [Drosophila melanogaster]
Length = 1109
Score = 43.5 bits (101), Expect = 0.006
Identities = 92/435 (21%), Positives = 171/435 (39%), Gaps = 54/435 (12%)
Query: 13 EVVKKCREFKRSLQEEK--CSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRS 70
E+ KK ++ ++ L++EK S + L SY R +IE+ + +E +A R
Sbjct: 362 ELEKKLQDLQKELEQEKEKLSRQAQTLQSYEESEAKYRLRIENLESKVLETAAQAASDRE 421
Query: 71 SFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYA 130
+ +R+ + E C+ + +EK V++ L A
Sbjct: 422 N---------------LRKELNCVSAAHEQCENAAAARKRELEKLNSEVKVKADQLHA-A 465
Query: 131 TQAKASAEL--------VEGAWKSVKKSLDFYTDK-HQEFIKRLNYASEAIDNEYNIAPP 181
+ A EL +E S S + D+ Q+ K LNY+++ N
Sbjct: 466 LRRCADLELQVLTLERDLERLKNSDNSSKQYSVDEIAQQVEKELNYSAQLDSNILKAIES 525
Query: 182 EILNESDFESPTIVYNPKKSVY-------DEHLKDLREDFSF--SLYADL---KNRINAS 229
E N D + V ++++ DE+ RE + +L A L + + A
Sbjct: 526 EEENNLDKKLQKGVQTEEETLPGTGNGTDDENFTGERELLNQLEALRAQLAVEREQCEAM 585
Query: 230 SKLDRTTTSKEQEFEKNLEDLMPGFRGGTDT-LSGDELEHMASFRGQEFEKNLEDLMPSS 288
SK Q+ ++ ++ R +T L ++ H + +E + L+ + S
Sbjct: 586 SKELLGEKQHSQDIQEQDVIIIEAMRKRLETALDAEDELHKQLDQERERCERLQTQLTSL 645
Query: 289 LGVHSYDESLNLAKKNCVKNCKKALGDFT----EKIKESPNDLNAINEAFNHLETELERA 344
S S L K K DF ++++ L A NE + +R+
Sbjct: 646 QRAESRRNSSLLLKSPGDSPRKSPRADFESELGDRLRSEIKLLVAQNERERERSADAQRS 705
Query: 345 TENLSQKIAPILERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNE---LRLAE 401
+E Q RYE + ++++ Y E L++E E D+++ E FNE L+ +E
Sbjct: 706 SERERQ-------RYEKELQERVAYCERLKQEMEKLSRDKESAETELEHFNERLTLQASE 758
Query: 402 FESVFSAIVPLEDLD 416
ES+ + +V L++ +
Sbjct: 759 IESLEARLVTLQEAE 773
>ref|NP_003557.1| (NM_003566) early endosome antigen 1, 162kD; early
endosome-associated protein [Homo sapiens]
pir||A57013 early endosome antigen 1 - human
gb|AAA79121.1| (L40157) endosome-associated protein [Homo sapiens]
Length = 1410
Score = 43.1 bits (100), Expect = 0.008
Identities = 56/350 (16%), Positives = 142/350 (40%), Gaps = 20/350 (5%)
Query: 8 TEEVKEVVKKCREFKRSLQEEK-----CSPFIKDLDSYALKIIVERRKIEHQLQEAIEKL 62
T ++++ + C + + L+E K ++L+ K+ + +++ ++A++ L
Sbjct: 694 TAKLQDKQEHCSQLESHLKEYKEKYLSLEQKTEELEGQIKKLEADSLEVKASKEQALQDL 753
Query: 63 RRAKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLL 122
++ ++ + E ++ L +M +EI+ +L + + L ++ + K E ++L
Sbjct: 754 QQQRQLNTDLELRATELSKQL-EMEKEIVSSTRLDLQKKSEALESIKQKLTKQEEEKQIL 812
Query: 123 ERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPE 182
++ E + + K E + ++ L + + + L+ + + ++
Sbjct: 813 KQDFETLSQETKIQHEELNNRIQTTVTELQKVKMEKEALMTELSTVKDKLS---KVSDSL 869
Query: 183 ILNESDFESPTIVYNPKKSVYD--EHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKE 240
++S+FE K ++ D + K+L+ + LK + L++ +
Sbjct: 870 KNSKSEFEKEN--QKGKAAILDLEKTCKELKHQLQVQMENTLKEQKELKKSLEKEKEASH 927
Query: 241 QEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNL 300
Q + L + +TL +E E Q+ + N+ +L SS E+L
Sbjct: 928 Q-LKLELNSMQEQLIQAQNTLKQNEKEE------QQLQGNINELKQSSEQKKKQIEALQG 980
Query: 301 AKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQ 350
K V + +++ ++ +L A E + L+ E++ E Q
Sbjct: 981 ELKIAVLQKTELENKLQQQLTQAAQELAAEKEKISVLQNNYEKSQETFKQ 1030
>gb|AAK18793.1|AF305601_1 (AF305601) LMP1 [Borrelia burgdorferi]
Length = 957
Score = 43.1 bits (100), Expect = 0.008
Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 35/297 (11%)
Query: 169 SEAIDNEYNIAPPEILN---ESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNR 225
+E I+N N +L + D E P ++ PK E + +ED + DLK++
Sbjct: 327 NELIENSKNKEASNLLLTLIKKDIE-PNLINIPKDPYKKEIFQLDKEDKNPQHPGDLKSK 385
Query: 226 INASSKLDRTTTSKEQEFEKNLEDLM---PGFRGGTDTLS-GDELEHMASFRGQEFEKNL 281
+++ +D T Q+ K+L + + P + TL+ ++++H L
Sbjct: 386 VHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQH------------L 433
Query: 282 EDLMPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETEL 341
EDL VHS + ++L K+ ++A+ D E +K +PND A + +
Sbjct: 434 EDLKSK---VHSI-KPIDLEN---TKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQY 486
Query: 342 ERATENLSQKIAPI-LERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLA 400
++ I PI LE ++ ++ EFL+ + +++ L
Sbjct: 487 LEDLKSKVHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDARASKTLAQANKIQ----HLE 542
Query: 401 EFESVFSAIVPLEDLDKPACAHHALKALEATLKNRDLGFDATELEQIAKGFIPKGYL 457
+ +S +I P+ DL+ A+K L LKN DA + +A+ + G L
Sbjct: 543 DLKSKVHSIKPI-DLENTKSRQQAIKDLNEFLKNNP--NDAQASKTLAQAYENNGDL 596
>pir||S44243 endosomal protein - human
emb|CAA55632.1| (X78998) endosomal protein [Homo sapiens]
Length = 1411
Score = 43.1 bits (100), Expect = 0.008
Identities = 56/350 (16%), Positives = 142/350 (40%), Gaps = 20/350 (5%)
Query: 8 TEEVKEVVKKCREFKRSLQEEK-----CSPFIKDLDSYALKIIVERRKIEHQLQEAIEKL 62
T ++++ + C + + L+E K ++L+ K+ + +++ ++A++ L
Sbjct: 694 TAKLQDKQEHCSQLESHLKEYKEKYLSLEQKTEELEGQIKKLEADSLEVKASKEQALQDL 753
Query: 63 RRAKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLL 122
++ ++ + E ++ L +M +EI+ +L + + L ++ + K E ++L
Sbjct: 754 QQQRQLNTDLELRATELSKQL-EMEKEIVSSTRLDLQKKSEALESIKQKLTKQEEEKQIL 812
Query: 123 ERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPE 182
++ E + + K E + ++ L + + + L+ + + ++
Sbjct: 813 KQDFETLSQETKIQHEELNNRIQTTVTELQKVKMEKEALMTELSTVKDKLS---KVSDSL 869
Query: 183 ILNESDFESPTIVYNPKKSVYD--EHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKE 240
++S+FE K ++ D + K+L+ + LK + L++ +
Sbjct: 870 KNSKSEFEKEN--QKGKAAILDLEKTCKELKHQLQVQMENTLKEQKELKKSLEKEKEASH 927
Query: 241 QEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNL 300
Q + L + +TL +E E Q+ + N+ +L SS E+L
Sbjct: 928 Q-LKLELNSMQEQLIQAQNTLKQNEKEE------QQLQGNINELKQSSEQKKKQIEALQG 980
Query: 301 AKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQ 350
K V + +++ ++ +L A E + L+ E++ E Q
Sbjct: 981 ELKIAVLQKTELENKLQQQLTQAAQELAAEKEKISVLQNNYEKSQETFKQ 1030
>ref|NP_127173.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||F75063 hypothetical protein PAB0993 - Pyrococcus abyssi (strain Orsay)
emb|CAB50403.1| (AJ248287) hypothetical protein [Pyrococcus abyssi]
Length = 320
Score = 43.1 bits (100), Expect = 0.008
Identities = 67/345 (19%), Positives = 135/345 (38%), Gaps = 54/345 (15%)
Query: 4 WKTDTEEVKEVVKKCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLR 63
W E EVV+ +E + + + L+ Y++ + ++ ++ IE L
Sbjct: 12 WAFIQEHYPEVVEGLKELREWENVKNALADAERLEDYSILALAALVALKREMNLNIEDLA 71
Query: 64 RAKKKRSSFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLE 123
SS SF + L + I K E D+ ++ N+EK +L
Sbjct: 72 ERIYNVSSKLDSFKTETENNLKRIEREISSIKDAIEELDR-RTVVVTNVEK------VLP 124
Query: 124 RMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEI 183
R+ E+ E+ E K + KSL+ ++ E E + N N PE+
Sbjct: 125 RISELEERMFSFPLEIAESLEKRLIKSLEKRVEELVE---------EKVKNSNNGISPEV 175
Query: 184 LNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEF 243
+ E D++ +RE+ +L+ R+ + K+ + K +
Sbjct: 176 IRE---------------FIDKYDSLVREN------VELRRRLESREKIIKDLREKLAKM 214
Query: 244 EKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYD--ESLNLA 301
+++++++ +E+E + G+ ++ E + + SYD E+L +
Sbjct: 215 QESVKEM-------------EEIEKKVNEYGKIADEIKEVRVKLAKLTGSYDVREALRII 261
Query: 302 KKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATE 346
+KN + K + D +K+K + + E L+ +LER T+
Sbjct: 262 EKNFIP--KSKVEDLAKKLKALMEENEKLREENEKLKKDLERITQ 304
>gb|AAB47555.1| (U87231) myosin heavy chain [Gallus gallus]
Length = 1939
Score = 43.1 bits (100), Expect = 0.008
Identities = 78/395 (19%), Positives = 153/395 (37%), Gaps = 55/395 (13%)
Query: 16 KKCREFKRSL-----QEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRS 70
K CR + L +EE+ I DL++ ++ E + Q +E + + + +
Sbjct: 1250 KMCRTLEDQLSEIKTKEEQNQRMINDLNTQRARLQTETGEYSRQAEEKDALISQLSRGKQ 1309
Query: 71 SFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYA 130
F E R L + + K N + ++ H+ LL E Y
Sbjct: 1310 GFTQQIEELKRHLEEEI---------------KAKNALAHALQSARHDCELLR---EQYE 1351
Query: 131 TQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESDFE 190
+ +A EL K+ + + T + I+R EA + +A D E
Sbjct: 1352 EEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEA---KKKLAQ----RLQDAE 1404
Query: 191 SPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLEDL 250
N K + ++ + L+ + L D++ A + LD+ K++ F+K L +
Sbjct: 1405 EHVEAVNAKCASLEKTKQRLQNEVE-DLMVDVERSNAACAALDK----KQKNFDKILAEW 1459
Query: 251 MPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLN----LAKKNCV 306
+ L + E S + F+ ++Y+ESL+ L ++N
Sbjct: 1460 KQKYEETQTELEASQKESR-SLSTELFKMK-----------NAYEESLDHLETLKREN-- 1505
Query: 307 KNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYENDKRQK 366
KN ++ + D TE+I E ++ + + H+E E +L + A + +E K +
Sbjct: 1506 KNLQQEIADLTEQIAEGGKAVHELEKVKKHVEQEKSELQASLEEAEASL--EHEEGKILR 1563
Query: 367 LGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAE 401
L K + + E++ ++++ N LR+ E
Sbjct: 1564 LQLELNQIKSEIDRKIAEKDEEIDQLKRNHLRIVE 1598
>ref|NP_212344.1| (NC_001318) surface-located membrane protein 1 (lmp1) [Borrelia
burgdorferi]
pir||B70126 surface-located membrane protein 1 (lmp1) homolog - Lyme disease
spirochete
gb|AAC66595.1| (AE001131) surface-located membrane protein 1 (lmp1) [Borrelia
burgdorferi]
gb|AAK18792.1|AF305600_1 (AF305600) LMP1 [Borrelia burgdorferi]
gb|AAK18794.1|AF305602_1 (AF305602) LMP1 [Borrelia burgdorferi]
gb|AAK18796.1|AF305604_1 (AF305604) LMP1 [Borrelia burgdorferi]
gb|AAK18798.1|AF305606_1 (AF305606) LMP1 [Borrelia burgdorferi]
Length = 1119
Score = 43.1 bits (100), Expect = 0.008
Identities = 62/274 (22%), Positives = 114/274 (40%), Gaps = 33/274 (12%)
Query: 169 SEAIDNEYNIAPPEILN---ESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNR 225
+E I+N N +L + D E P ++ PK E + +ED DLK++
Sbjct: 327 NELIENSKNKEASNLLLTLIKKDIE-PNLINIPKDPYKKEIFQLDKEDKKPQYLEDLKSK 385
Query: 226 INASSKLDRTTTSKEQEFEKNLEDLM---PGFRGGTDTLS-GDELEHMASFRGQEFEKNL 281
+++ +D T Q+ K+L + + P + TL+ ++++H L
Sbjct: 386 VHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQH------------L 433
Query: 282 EDLMPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETEL 341
EDL VHS + ++L K+ ++A+ D E +K +PND A + +
Sbjct: 434 EDLKSK---VHSI-KPIDLEN---TKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQH 486
Query: 342 ERATENLSQKIAPI-LERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLA 400
++ I PI LE ++ ++ EFL+ + +++ L
Sbjct: 487 LEDLKSKVHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQ----HLE 542
Query: 401 EFESVFSAIVPLEDLDKPACAHHALKALEATLKN 434
+ +S +I P+ DL+ A+K L LKN
Sbjct: 543 DLKSKVHSIKPI-DLENTKSRQQAIKDLNEFLKN 575
>pir||S39081 myosin heavy chain, adult - chicken (fragment)
Length = 858
Score = 43.1 bits (100), Expect = 0.008
Identities = 78/395 (19%), Positives = 153/395 (37%), Gaps = 55/395 (13%)
Query: 16 KKCREFKRSL-----QEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRS 70
K CR + L +EE+ I DL++ ++ E + Q +E + + + +
Sbjct: 169 KMCRTLEDQLSEIKTKEEQNQRMINDLNTQRARLQTETGEYSRQAEEKDALISQLSRGKQ 228
Query: 71 SFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYA 130
F E R L + + K N + ++ H+ LL E Y
Sbjct: 229 GFTQQIEELKRHLEEEI---------------KAKNALAHALQSARHDCELLR---EQYE 270
Query: 131 TQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESDFE 190
+ +A EL K+ + + T + I+R EA + +A D E
Sbjct: 271 EEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEA---KKKLAQ----RLQDAE 323
Query: 191 SPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLEDL 250
N K + ++ + L+ + L D++ A + LD+ K++ F+K L +
Sbjct: 324 EHVEAVNAKCASLEKTKQRLQNEVE-DLMVDVERSNAACAALDK----KQKNFDKILAEW 378
Query: 251 MPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLN----LAKKNCV 306
+ L + E S + F+ ++Y+ESL+ L ++N
Sbjct: 379 KQKYEETQTELEASQKESR-SLSTELFKMK-----------NAYEESLDHLETLKREN-- 424
Query: 307 KNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYENDKRQK 366
KN ++ + D TE+I E ++ + + H+E E +L + A + +E K +
Sbjct: 425 KNLQQEIADLTEQIAEGGKAVHELEKVKKHVEQEKSELQASLEEAEASL--EHEEGKILR 482
Query: 367 LGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAE 401
L K + + E++ ++++ N LR+ E
Sbjct: 483 LQLELNQIKSEIDRKIAEKDEEIDQLKRNHLRIVE 517
>sp|P13538|MYSS_CHICK Myosin heavy chain, skeletal muscle, adult
Length = 1939
Score = 43.1 bits (100), Expect = 0.008
Identities = 78/395 (19%), Positives = 153/395 (37%), Gaps = 55/395 (13%)
Query: 16 KKCREFKRSL-----QEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRS 70
K CR + L +EE+ I DL++ ++ E + Q +E + + + +
Sbjct: 1250 KMCRTLEDQLSEIKTKEEQNQRMINDLNTQRARLQTETGEYSRQAEEKDALISQLSRGKQ 1309
Query: 71 SFWGSFVEGARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYA 130
F E R L + + K N + ++ H+ LL E Y
Sbjct: 1310 GFTQQIEELKRHLEEEI---------------KAKNALAHALQSARHDCELLR---EQYE 1351
Query: 131 TQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESDFE 190
+ +A EL K+ + + T + I+R EA + +A D E
Sbjct: 1352 EEQEAKGELQRALSKANSEVAQWRTKYETDAIQRTEELEEA---KKKLAQ----RLQDAE 1404
Query: 191 SPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLEDL 250
N K + ++ + L+ + L D++ A + LD+ K++ F+K L +
Sbjct: 1405 EHVEAVNAKCASLEKTKQRLQNEVE-DLMVDVERSNAACAALDK----KQKNFDKILAEW 1459
Query: 251 MPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLN----LAKKNCV 306
+ L + E S + F+ ++Y+ESL+ L ++N
Sbjct: 1460 KQKYEETQTELEASQKESR-SLSTELFKMK-----------NAYEESLDHLETLKREN-- 1505
Query: 307 KNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYENDKRQK 366
KN ++ + D TE+I E ++ + + H+E E +L + A + +E K +
Sbjct: 1506 KNLQQEIADLTEQIAEGGKAVHELEKVKKHVEQEKSELQASLEEAEASL--EHEEGKILR 1563
Query: 367 LGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLAE 401
L K + + E++ ++++ N LR+ E
Sbjct: 1564 LQLELNQIKSEIDRKIAEKDEEIDQLKRNHLRIVE 1598
>dbj|BAA34955.1| (AB015485) myosin heavy chain [Dugesia japonica]
Length = 1743
Score = 42.7 bits (99), Expect = 0.010
Identities = 79/386 (20%), Positives = 154/386 (39%), Gaps = 56/386 (14%)
Query: 12 KEVVKKCREFKRSLQEE--KCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKR 69
+E +KK E L+EE K + KDL+ + ++ + + QLQ + L A++K
Sbjct: 637 EEEMKKAAEELAKLKEEFEKSEKYKKDLEEQNVTLLQAKNDLFLQLQTEQDSLADAEEKV 696
Query: 70 SSFWGSFVEGARDLLDMVREI---IPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERML 126
S V D+ ++E+ + + A ++ + IE+ + +V LE L
Sbjct: 697 S----KLVLQKADMEGRIKELEDQLSEEENSATTLEEAKKKLNGEIEELKKDVESLESSL 752
Query: 127 EIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNE 186
+ AE + A K+L+ + +E I ++ +A D + E
Sbjct: 753 Q--------KAEQEKAAKDQQIKTLNDNVREKEEQITKMQKEKKAADELQKKTEESLRAE 804
Query: 187 SDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKN 246
E N K+ ++ + ++ E+ S + ++ A +++ E E ++N
Sbjct: 805 ---EEKVSNLNKAKAKLEQAVDEMEENLS------REQKVRAD--VEKAKRKVEGELKQN 853
Query: 247 LEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSLGVHSYDESLNLAKKNCV 306
E L ++LE + S E E+ L+ G +S E N N V
Sbjct: 854 QEML-------------NDLERVKS----ELEEQLKRKEMELNGANSKIEDEN----NLV 892
Query: 307 KNCKKALGDFTEKIKESPNDLNA-------INEAFNHLETELERATENLSQKIAPILERY 359
++ + + +I+E DL A +A + LE E+E TE L ++ +
Sbjct: 893 ATLQRKIKELQARIQELEEDLEAERQARAKAEKAKHQLEAEIEEVTERLEEQGGATQAQT 952
Query: 360 ENDKRQKLGYGEFLEKEKEGFMVDEQ 385
+ +K+++ + +E M EQ
Sbjct: 953 DLNKKREAELMKLKRDLEEANMQHEQ 978
>emb|CAC95143.1| (AJ416752) variable membrane protein [Mycoplasma hominis]
Length = 1404
Score = 42.7 bits (99), Expect = 0.010
Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 39/286 (13%)
Query: 99 EACDKVLNLMEDNIEKWEHNVRLLERMLEIYATQAKASAELVEGAW------KSVKKSLD 152
+A + + + D +K E + ++++ M E +Q KA +L+ + K+SL
Sbjct: 100 KAIESLTKKINDKNKKHEEDQKIVQAMQEFKKSQ-KALGDLINSDDGQRVDNSNAKQSLQ 158
Query: 153 FYTDKHQEFIKRLNYASEAIDNEYNIAPPEILNESDFESPTIVYNPKKSVYDEHLKDLRE 212
T ++ I+++ A I+ +I N + E V+ KK ++ +K
Sbjct: 159 NNTVNNKSSIEQIIQAISKINEAKKELQSQINNARNQEKE--VFEEKKQQLNKLIKSNEI 216
Query: 213 DFSFSL--YADLKNRINASSKLDRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDELEHMA 270
D S A LKN +T +K +E EK +E L ++ +
Sbjct: 217 DNSKKADETAILKNTNVVVGDSIKTIETKTKEIEKAIESLTNKINEFKKEQEKANVKAVF 276
Query: 271 SFRGQEFEKNLEDLMPSSLG--VHSYDESLNLAK------------KNCVKNCKKALGDF 316
S + K L+DL+ S G V S +ES L K +N K+ +KA+
Sbjct: 277 SKKS----KQLKDLIDSEDGKKVDSSNESQVLTKTKIDENSSIEDIQNKTKDIEKAIESL 332
Query: 317 TEKIKESPNDLNAINEAFNHL----------ETELERATENLSQKI 352
T KI + N +NE N ++E+++A L Q+I
Sbjct: 333 TNKINDQKQQKNMLNEVINKAKELVKKLVDSDSEIQQAKTQLDQEI 378
>gb|AAK18800.1|AF305608_1 (AF305608) LMP1 [Borrelia burgdorferi]
Length = 1065
Score = 42.7 bits (99), Expect = 0.010
Identities = 61/274 (22%), Positives = 115/274 (41%), Gaps = 33/274 (12%)
Query: 169 SEAIDNEYNIAPPEILN---ESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNR 225
+E I+N N +L + D E P ++ PK E + +ED DLK++
Sbjct: 327 NELIENSKNKEASNLLLTLIKKDIE-PNLINIPKDPYKKEIFQLDKEDKKPQYLEDLKSK 385
Query: 226 INASSKLDRTTTSKEQEFEKNLEDLM---PGFRGGTDTLS-GDELEHMASFRGQEFEKNL 281
+++ +D T Q+ K+L + + P + TL+ +++++ L
Sbjct: 386 VHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQY------------L 433
Query: 282 EDLMPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETEL 341
EDL VHS + ++L K+ ++A+ D E +K +PND A + +
Sbjct: 434 EDLKSK---VHSI-KPIDLEN---TKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQY 486
Query: 342 ERATENLSQKIAPI-LERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLA 400
++ I PI LE ++ ++ EFL+ + ++++ L
Sbjct: 487 LEDLKSKVHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQY----LE 542
Query: 401 EFESVFSAIVPLEDLDKPACAHHALKALEATLKN 434
+ +S +I P+ DL+ A+K L LKN
Sbjct: 543 DLKSKVHSIKPI-DLENTKSRQQAIKDLNEFLKN 575
>ref|NP_190330.1| (NM_114614) chromosome assembly protein homolog [Arabidopsis
thaliana]
pir||T45706 chromosome-associated protein E homolog F1P2.10 - Arabidopsis
thaliana
emb|CAB61972.1| (AL132955) chromosome assembly protein homolog [Arabidopsis
thaliana]
Length = 1171
Score = 42.7 bits (99), Expect = 0.010
Identities = 94/447 (21%), Positives = 181/447 (40%), Gaps = 66/447 (14%)
Query: 25 LQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAIEKLRRAKKKRSSFWGSFVEGARDLL 84
+ E K +K L+ K+ + +E + A+EKLRR K S + + G +L
Sbjct: 173 MYENKKEAALKTLEKKQTKVDEINKLLEKDILPALEKLRREK----SQYMQWANGNAELD 228
Query: 85 DMVREIIPPAKLGAEACDKVLNLMEDNIEKWEHNVRLLERMLEIYATQAKASAELVEGAW 144
+ R + + AE + DN ++ ++E M +I T + +G
Sbjct: 229 RLKRFCVAFEYVQAEK-------IRDN------SIHVVEEM-KIKMTGIDEQTDKTQGEI 274
Query: 145 KSVKKSLDFYTDKHQEF----IKRLNYASEAIDNEYNIAPPEILNESDFESPTIVYNPKK 200
++K + T + +K L+ +++ NE ++ N D N +K
Sbjct: 275 SELEKQIKALTQAREASMGGEVKALSDKVDSLSNEVTRELSKLTNMEDTLQGE-EKNAEK 333
Query: 201 SVYDEHLKDLREDFSFSLYADLKNRINASSKLDRTTTSKEQEFEKNLEDLMPGFRGGTDT 260
V+ +++DL++ ++ R +A +K D +Q+F++ + T
Sbjct: 334 MVH--NIEDLKK--------SVEERASALNKCDEGAAELKQKFQE-----------FSTT 372
Query: 261 LSGDELEHMASFRGQ---EFEKNLED-LMPSSLGVHSYD---ESLNLAKKNCVKNCKKAL 313
L E EH G+ + EK LED L + + V + + + LN +C K K+
Sbjct: 373 LEECEREHQGILAGKSSGDEEKCLEDQLRDAKISVGTAETELKQLNTKISHCEKELKEKK 432
Query: 314 GDFTEKIKESPNDLNAINEAFNHLETELERATENLSQKIAPILERYENDKRQKLGYGEFL 373
K E+ N ++ N +E+ ++RA ++L K +E E D+ +L G L
Sbjct: 433 SQLMSKQDEAVAVENELDARKNDVES-VKRAFDSLPYKEGQ-MEALEKDRESELEIGHRL 490
Query: 374 E---KEKEGFMVDEQNPYPEEVRFNELRLAEFESVFSAIVPLEDLDKPACAHHALKALEA 430
+ E + + Q Y + V+ ++ + V + ++ + D ++ ALE
Sbjct: 491 KDKVHELSAQLANVQFTYRDPVK--NFDRSKVKGVVAKLIKVND-------RSSMTALEV 541
Query: 431 TLKNRDLGFDATELEQIAKGFIPKGYL 457
T + L + E K + KG L
Sbjct: 542 TAGGK-LFNVIVDTEDTGKQLLQKGDL 567
>gb|AAK18797.1|AF305605_1 (AF305605) LMP1 [Borrelia burgdorferi]
Length = 1065
Score = 42.7 bits (99), Expect = 0.010
Identities = 63/274 (22%), Positives = 114/274 (40%), Gaps = 33/274 (12%)
Query: 169 SEAIDNEYNIAPPEILN---ESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNR 225
+E I+N N +L + D E P ++ PK E + +ED DLK++
Sbjct: 327 NELIENSKNKEASNLLLTLIKKDIE-PNLINIPKDPYKKEIFQLDKEDKKPQHPGDLKSK 385
Query: 226 INASSKLDRTTTSKEQEFEKNLEDLM---PGFRGGTDTLSGDELEHMASFRGQEFE-KNL 281
+++ +D T Q+ K+L + + P + TL+ Q +E + L
Sbjct: 386 VHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDAQASKTLA------------QAYEIQYL 433
Query: 282 EDLMPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETEL 341
EDL VHS + ++L K+ ++A+ D E +K +PND A + +
Sbjct: 434 EDLKSK---VHSI-KPIDLEN---TKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQY 486
Query: 342 ERATENLSQKIAPI-LERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNELRLA 400
++ I PI LE ++ ++ EFL+ + ++++ L
Sbjct: 487 LEDLKSKVHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQY----LE 542
Query: 401 EFESVFSAIVPLEDLDKPACAHHALKALEATLKN 434
+ +S +I P+ DL+ A+K L LKN
Sbjct: 543 DLKSKVHSIKPI-DLENTKSRQQAIKDLNEFLKN 575
>gb|AAK18795.1|AF305603_1 (AF305603) LMP1 [Borrelia burgdorferi]
Length = 1011
Score = 42.7 bits (99), Expect = 0.010
Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 39/277 (14%)
Query: 169 SEAIDNEYNIAPPEILN---ESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNR 225
+E I+N N +L + D E P ++ PK E + +ED DLK++
Sbjct: 327 NELIENSKNKEASNLLLTLIKKDIE-PNLINIPKDPYKKEIFQLDKEDKKPQYLEDLKSK 385
Query: 226 INASSKLDRTTTSKEQEFEKNLEDLM---PGFRGGTDTLS-GDELEHMASFRGQEFEKNL 281
+++ +D T Q+ K+L + + P + TL+ ++++H+ + + +
Sbjct: 386 VHSIKPIDLENTKSRQQAIKDLNEFLKNNPNDAQASKTLAQANKIQHLENLKSK------ 439
Query: 282 EDLMPSSLGVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETEL 341
VHS + ++L K+ ++A+ D E +K +PND A +
Sbjct: 440 ---------VHSI-KPIDLEN---TKSRQQAIKDLNEFLKNNPNDAQASKTL---AQANK 483
Query: 342 ERATENLSQKIAPI----LERYENDKRQKLGYGEFLEKEKEGFMVDEQNPYPEEVRFNEL 397
+ ENL K+ I LE ++ ++ EFL+ D Q +
Sbjct: 484 IQHLENLKSKVHSIKPIDLENTKSRQQAIKDLNEFLKNNPN----DAQASKTLAQAYKIQ 539
Query: 398 RLAEFESVFSAIVPLEDLDKPACAHHALKALEATLKN 434
L +S +I P+ DL+ A+K L LKN
Sbjct: 540 HLENLKSKVHSIKPI-DLENTKSRQQAIKDLNEFLKN 575
>gb|AAF78288.1|AF099663_1 (AF099663) merozoite surface protein 3g [Plasmodium vivax]
Length = 969
Score = 42.7 bits (99), Expect = 0.010
Identities = 84/378 (22%), Positives = 139/378 (36%), Gaps = 22/378 (5%)
Query: 1 MAEWKTDTEEVKEVVK-KCREFKRSLQEEKCSPFIKDLDSYALKIIVERRKIEHQLQEAI 59
+AE +T +E K K K S + K S + + A K + ++ + EAI
Sbjct: 368 IAENHPNTNVTEEANKAKVASTKASTEATKASTEATNASTEATKPSSKAANVKKKTDEAI 427
Query: 60 EKLRRAKK-KRSSFWGSFVE---GARDLLDMVREIIPPAKLGAEACDKVLNLMEDNIEKW 115
+ + AKK K ++ FV A++ E AK AEA + + + E
Sbjct: 428 KAAKEAKKAKTEAYIALFVTKAMAAKEKAKKSAEAADKAKAQAEAVNGASEKTKKDAEHA 487
Query: 116 EHNVRLLERMLEIYATQAKASAELVEGAWKSVKKSLDFYTDKHQEFIKRLNYASEAIDNE 175
+ E A AK +AE+ +V K+ + K + I+++ A ++ ++
Sbjct: 488 ATKANEKKTHTETAADAAKKNAEVKVEEEDNVAKNEEKMKKKVDDVIEKVLEALKSEEDT 547
Query: 176 Y------NIAPPEILNESDFESPTIVYNPKKSVYDEHLKDLREDFSFSLYADLKNRINAS 229
Y IA E E K DE +K +E + K + +
Sbjct: 548 YQAQIQAEIAVQVANVEEACEKAKTAEQEAKKAKDEAVKAAKE------AEEAKKQAEKA 601
Query: 230 SKLDRTTTSKEQEFEKNLEDLMPGFRGGTDTLSGDELEHMASFRGQEFEKNLEDLMPSSL 289
K+ +T T +E K E + +T +GD E + + EFE +
Sbjct: 602 EKITKTAT-EEANKAKEEEAKASEAKQEAETKAGDVDEEVYAV-NVEFES--VKAAAKAA 657
Query: 290 GVHSYDESLNLAKKNCVKNCKKALGDFTEKIKESPNDLNAINEAFNHLETELERATENLS 349
H E L+ KKN KKA TE + EA ++A+EN
Sbjct: 658 AHHKVPEILDKEKKNAENAAKKASAKATEAKTTAETATKKATEA-KTAAGNAQKASENAK 716
Query: 350 QKIAPILERYENDKRQKL 367
A +L + + Q L
Sbjct: 717 AIAADVLAEKASTEAQSL 734
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,056,303
Number of Sequences: 1026957
Number of extensions: 13543185
Number of successful extensions: 50282
Number of sequences better than 1.0e-02: 50
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 50148
Number of HSP's gapped (non-prelim): 156
length of query: 496
length of database: 324,149,939
effective HSP length: 125
effective length of query: 371
effective length of database: 195,780,314
effective search space: 72634496494
effective search space used: 72634496494
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 99 (42.7 bits)