BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645246|ref|NP_207416.1| hypothetical protein
[Helicobacter pylori 26695]
(120 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207416.1| (NC_000915) hypothetical protein [Helicoba... 233 4e-61
ref|NP_223284.1| (NC_000921) putative [Helicobacter pylori ... 229 4e-60
ref|NP_282203.1| (NC_002163) putative integral membrane pro... 39 0.008
>ref|NP_207416.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64597 hypothetical protein HP0622 - Helicobacter pylori (strain 26695)
gb|AAD07689.1| (AE000576) H. pylori predicted coding region HP0622 [Helicobacter
pylori 26695]
Length = 120
Score = 233 bits (593), Expect = 4e-61
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MGAVVVLFLTLVLLFLVLRDFGLASPKQKILAFLIVGIIGASISVYTYKQNQQNQQEIAL 60
MGAVVVLFLTLVLLFLVLRDFGLASPKQKILAFLIVGIIGASISVYTYKQNQQNQQEIAL
Sbjct: 1 MGAVVVLFLTLVLLFLVLRDFGLASPKQKILAFLIVGIIGASISVYTYKQNQQNQQEIAL 60
Query: 61 QRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLVDLDSCQTLQKDPLIQP 120
QRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLVDLDSCQTLQKDPLIQP
Sbjct: 61 QRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLVDLDSCQTLQKDPLIQP 120
>ref|NP_223284.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71917 hypothetical protein jhp0566 - Helicobacter pylori (strain J99)
gb|AAD06137.1| (AE001489) putative [Helicobacter pylori J99]
Length = 120
Score = 229 bits (584), Expect = 4e-60
Identities = 117/120 (97%), Positives = 118/120 (97%)
Query: 1 MGAVVVLFLTLVLLFLVLRDFGLASPKQKILAFLIVGIIGASISVYTYKQNQQNQQEIAL 60
MG VVLFLTL+LLFLVLRDFGLASPKQKILAFLIVGIIGASISVYTYKQNQQNQQEIAL
Sbjct: 1 MGVAVVLFLTLILLFLVLRDFGLASPKQKILAFLIVGIIGASISVYTYKQNQQNQQEIAL 60
Query: 61 QRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLVDLDSCQTLQKDPLIQP 120
QRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLVDLDSCQTLQKDPLIQP
Sbjct: 61 QRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGKKQTPMKDVLVDLDSCQTLQKDPLIQP 120
>ref|NP_282203.1| (NC_002163) putative integral membrane protein [Campylobacter
jejuni]
pir||B81308 probable integral membrane protein Cj1053c [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB73309.1| (AL139077) putative integral membrane protein [Campylobacter
jejuni]
Length = 116
Score = 39.3 bits (90), Expect = 0.008
Identities = 29/114 (25%), Positives = 55/114 (47%), Gaps = 6/114 (5%)
Query: 1 MGAVVVLFLTLVLLFLV---LRDFGLASPKQKILAFLIVGIIGASISVYTYKQNQQNQQE 57
M V + FL +++L L+ LR+ L + L+V I ++ + ++ Q++
Sbjct: 1 MSRVFLYFLIILILALITFALRE-KLGKKTKPFFGILLVIFIVLAV-FFEFENTQKSHLR 58
Query: 58 IALQRAFLRGETLLCKGIKVNNQTFNLVSGTLSFLGK-KQTPMKDVLVDLDSCQ 110
+ AF + + +LCK I V+ FN GT SF+ K +++D+ C+
Sbjct: 59 TDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFNSLIIDIKDCR 112
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.325 0.142 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,564,463
Number of Sequences: 1026957
Number of extensions: 2400027
Number of successful extensions: 8624
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8622
Number of HSP's gapped (non-prelim): 3
length of query: 120
length of database: 324,149,939
effective HSP length: 96
effective length of query: 24
effective length of database: 225,562,067
effective search space: 5413489608
effective search space used: 5413489608
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 90 (39.3 bits)