BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645251|ref|NP_207421.1| hypothetical protein
[Helicobacter pylori 26695]
         (110 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207421.1|  (NC_000915) hypothetical protein [Helicoba...   224  2e-58
ref|NP_223289.1|  (NC_000921) putative [Helicobacter pylori ...   208  1e-53

>ref|NP_207421.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64598 hypothetical protein HP0627 - Helicobacter pylori (strain 26695)
 gb|AAD07698.1| (AE000577) H. pylori predicted coding region HP0627 [Helicobacter
           pylori 26695]
          Length = 110

 Score =  224 bits (570), Expect = 2e-58
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MLKKSLLLLVFLVLQLSGAEENNQAPKNTPPELNPANAKGAPNSNTQITPKNDNSNLLDK 60
           MLKKSLLLLVFLVLQLSGAEENNQAPKNTPPELNPANAKGAPNSNTQITPKNDNSNLLDK
Sbjct: 1   MLKKSLLLLVFLVLQLSGAEENNQAPKNTPPELNPANAKGAPNSNTQITPKNDNSNLLDK 60

Query: 61  LGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFASGGDVC 110
           LGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFASGGDVC
Sbjct: 61  LGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFASGGDVC 110



>ref|NP_223289.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71914 hypothetical protein jhp0571 - Helicobacter pylori (strain J99)
 gb|AAD06154.1| (AE001490) putative [Helicobacter pylori J99]
          Length = 352

 Score =  208 bits (529), Expect = 1e-53
 Identities = 102/106 (96%), Positives = 103/106 (96%)

Query: 1   MLKKSLLLLVFLVLQLSGAEENNQAPKNTPPELNPANAKGAPNSNTQITPKNDNSNLLDK 60
           MLKKSLLLLVFL+LQLSGAEENNQAPKNTPPELNPAN KGAPN NTQITPKNDNSNLLDK
Sbjct: 1   MLKKSLLLLVFLILQLSGAEENNQAPKNTPPELNPANTKGAPNPNTQITPKNDNSNLLDK 60

Query: 61  LGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFASG 106
           LGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFA G
Sbjct: 61  LGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFAVG 106



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.309    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,828,905
Number of Sequences: 1026957
Number of extensions: 3226017
Number of successful extensions: 8921
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8917
Number of HSP's gapped (non-prelim): 4
length of query: 110
length of database: 324,149,939
effective HSP length: 86
effective length of query: 24
effective length of database: 235,831,637
effective search space: 5659959288
effective search space used: 5659959288
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 90 (39.3 bits)