BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644694|ref|NP_206864.1| hypothetical protein
[Helicobacter pylori 26695]
         (139 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_206864.1|  (NC_000915) hypothetical protein [Helicoba...   286  3e-77
dbj|BAA33499.1|  (AB003309) cdrA [Helicobacter pylori]            249  5e-66
ref|NP_222781.1|  (NC_000921) putative [Helicobacter pylori ...   232  6e-61

>ref|NP_206864.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64527 hypothetical protein HP0064 - Helicobacter pylori (strain 26695)
 gb|AAD07141.1| (AE000528) H. pylori predicted coding region HP0064 [Helicobacter
           pylori 26695]
          Length = 139

 Score =  286 bits (731), Expect = 3e-77
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   METIPANSELNWEFVEPLNEKALSGLEERLKIGFSDAFKDFVKRSNYGFSQWRSFVVGNK 60
           METIPANSELNWEFVEPLNEKALSGLEERLKIGFSDAFKDFVKRSNYGFSQWRSFVVGNK
Sbjct: 1   METIPANSELNWEFVEPLNEKALSGLEERLKIGFSDAFKDFVKRSNYGFSQWRSFVVGNK 60

Query: 61  SYTFKHVLNFNLEGLFIDFMQSLKEWLEPEEIIFANDGYGGYYLLNTATDVVLFLDTDDG 120
           SYTFKHVLNFNLEGLFIDFMQSLKEWLEPEEIIFANDGYGGYYLLNTATDVVLFLDTDDG
Sbjct: 61  SYTFKHVLNFNLEGLFIDFMQSLKEWLEPEEIIFANDGYGGYYLLNTATDVVLFLDTDDG 120

Query: 121 SKHALLHLKMFLKKLESRG 139
           SKHALLHLKMFLKKLESRG
Sbjct: 121 SKHALLHLKMFLKKLESRG 139



>dbj|BAA33499.1| (AB003309) cdrA [Helicobacter pylori]
          Length = 367

 Score =  249 bits (635), Expect = 5e-66
 Identities = 123/138 (89%), Positives = 128/138 (92%), Gaps = 2/138 (1%)

Query: 1   METIPANSELNWEFVEPLNEKALSGLEERLKIGFSDAFKDFVKRSNYGFSQWRSFVVGNK 60
           METIP  SELNWEFVEPLNEKALSGLE +LK+G SDAFKDFVKRSNYGFSQWRSF+VGNK
Sbjct: 1   METIPTKSELNWEFVEPLNEKALSGLEYQLKMGLSDAFKDFVKRSNYGFSQWRSFMVGNK 60

Query: 61  SYTFKHVLNFNLE--GLFIDFMQSLKEWLEPEEIIFANDGYGGYYLLNTATDVVLFLDTD 118
           SYTFKHVLNFNL+  GL IDFMQSLKEWLEPEEIIFANDGY GYYLLNTA+DVVLFLDTD
Sbjct: 61  SYTFKHVLNFNLDGKGLLIDFMQSLKEWLEPEEIIFANDGYEGYYLLNTASDVVLFLDTD 120

Query: 119 DGSKHALLHLKMFLKKLE 136
           DGSKHALLHLKMFL K E
Sbjct: 121 DGSKHALLHLKMFLIKRE 138



>ref|NP_222781.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71978 hypothetical protein jhp0059 - Helicobacter pylori (strain J99)
 gb|AAD05643.1| (AE001445) putative [Helicobacter pylori J99]
          Length = 139

 Score =  232 bits (591), Expect = 6e-61
 Identities = 113/139 (81%), Positives = 122/139 (87%)

Query: 1   METIPANSELNWEFVEPLNEKALSGLEERLKIGFSDAFKDFVKRSNYGFSQWRSFVVGNK 60
           M+ I   +ELNWEFVE LNE ALS LEERL+IGFSDAFKDF+KRSNYGFSQ R F+VGN+
Sbjct: 1   MDRISTETELNWEFVESLNENALSDLEERLEIGFSDAFKDFIKRSNYGFSQLRYFMVGNE 60

Query: 61  SYTFKHVLNFNLEGLFIDFMQSLKEWLEPEEIIFANDGYGGYYLLNTATDVVLFLDTDDG 120
           SY FKHVLNFNLE L IDFMQSLKEWLEPEEI+FANDGYGGYYL NT TDVVLFLDTD+G
Sbjct: 61  SYMFKHVLNFNLESLLIDFMQSLKEWLEPEEIVFANDGYGGYYLWNTTTDVVLFLDTDNG 120

Query: 121 SKHALLHLKMFLKKLESRG 139
           SK  LL+L MFLKKLESRG
Sbjct: 121 SKKVLLNLNMFLKKLESRG 139



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,609,293
Number of Sequences: 1026957
Number of extensions: 3939873
Number of successful extensions: 7888
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7884
Number of HSP's gapped (non-prelim): 3
length of query: 139
length of database: 324,149,939
effective HSP length: 115
effective length of query: 24
effective length of database: 206,049,884
effective search space: 4945197216
effective search space used: 4945197216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 89 (38.9 bits)