BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645252|ref|NP_207422.1| hypothetical protein
[Helicobacter pylori 26695]
(225 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207422.1| (NC_000915) hypothetical protein [Helicoba... 484 e-136
ref|NP_223289.1| (NC_000921) putative [Helicobacter pylori ... 480 e-135
ref|NP_222869.1| (NC_000921) putative [Helicobacter pylori ... 100 2e-20
ref|NP_207033.1| (NC_000915) conserved hypothetical secrete... 99 4e-20
gb|AAL47062.1|AF326614_1 (AF326614) JHP318-like protein [He... 98 6e-20
gb|AAB63298.1| (AF008565) Orf2 [Helicobacter pylori] 98 6e-20
gb|AAC24210.1| (AF053708) cysteine-rich protein; HcpA [Heli... 98 6e-20
ref|NP_206959.1| (NC_000915) conserved hypothetical secrete... 98 8e-20
ref|NP_222941.1| (NC_000921) putative [Helicobacter pylori ... 96 2e-19
ref|NP_222918.1| (NC_000921) putative [Helicobacter pylori ... 95 5e-19
ref|NP_207009.1| (NC_000915) conserved hypothetical secrete... 94 9e-19
ref|NP_207889.1| (NC_000915) conserved hypothetical secrete... 91 1e-17
ref|NP_223741.1| (NC_000921) putative [Helicobacter pylori ... 91 1e-17
ref|NP_223037.1| (NC_000921) putative [Helicobacter pylori ... 89 4e-17
ref|NP_207908.1| (NC_000915) conserved hypothetical secrete... 84 9e-16
gb|AAL47058.1|AF326608_1 (AF326608) JHP318-like protein [He... 83 2e-15
gb|AAL47059.1|AF326610_1 (AF326610) JHP318-like protein [He... 83 3e-15
ref|NP_223762.1| (NC_000921) putative [Helicobacter pylori ... 82 3e-15
gb|AAB47276.1| (U86608) 29 kDa protein [Helicobacter pylori] 81 1e-14
ref|NP_273467.1| (NC_003112) conserved hypothetical protein... 80 2e-14
gb|AAM66149.1|AF326628_1 (AF326628) JHP1437-like protein [H... 78 8e-14
gb|AAM66156.1|AF326634_1 (AF326634) JHP1437-like protein [H... 77 1e-13
gb|AAM66155.1|AF326633_1 (AF326633) JHP1437-like protein [H... 75 5e-13
ref|NP_281603.1| (NC_002163) putative periplasmic protein [... 74 2e-12
gb|AAM66150.1|AF326629_1 (AF326629) JHP1437-like protein [H... 73 2e-12
gb|AAD05210.1| (AF063095) SELlL [Mus musculus] >gi|20073079... 72 5e-12
ref|XP_127076.1| (XM_127076) similar to Sel-1 homolog precu... 72 5e-12
ref|NP_005056.3| (NM_005065) sel-1 suppressor of lin-12-lik... 72 5e-12
gb|AAF29413.1|AF052059_1 (AF052059) SEL1L [Homo sapiens] >g... 72 5e-12
dbj|BAB12403.1| (AB048195) SEL1L [Mesocricetus auratus] 72 6e-12
ref|NP_415177.1| (NC_000913) orf, hypothetical protein [Esc... 69 5e-11
pir||T46587 hypothetical protein [imported] - Vogesella ind... 69 5e-11
sp|P77234|YBEQ_ECOLI Hypothetical protein ybeQ 69 5e-11
ref|NP_435252.1| (NC_003037) hypothetical protein [Sinorhiz... 67 2e-10
ref|NP_459646.1| (NC_003197) putative TPR repeat protein [S... 66 3e-10
gb|EAA06387.1| (AAAB01008846) agCP13101 [Anopheles gambiae ... 65 4e-10
ref|NP_586349.1| (NC_003237) similarity to SKT5 PROTEIN [En... 65 4e-10
gb|AAL47060.1|AF326611_1 (AF326611) JHP318-like protein [He... 65 6e-10
gb|AAF01236.1|AF185288_1 (AF185288) immunoreactive protein ... 65 7e-10
ref|NP_651179.1| (NM_142922) BcDNA:LD23587 gene product [Dr... 65 7e-10
ref|NP_207134.1| (NC_000915) hypothetical protein [Helicoba... 64 2e-09
emb|CAB65792.2| (AL109657) dJ842G6.2 (novel protein imilar ... 64 2e-09
ref|XP_046437.2| (XM_046437) similar to dJ842G6.2 (novel pr... 64 2e-09
ref|XP_131544.1| (XM_131544) RIKEN cDNA 2010305A19 [Mus mus... 63 2e-09
gb|AAH15313.1|AAH15313 (BC015313) hypothetical protein FLJ1... 63 3e-09
ref|NP_075565.1| (NM_023077) hypothetical protein FLJ12439 ... 62 4e-09
gb|AAD41587.1|AF057704_3 (AF057704) enhanced entry protein ... 62 5e-09
dbj|BAB25716.1| (AK008518) data source:SPTR, source key:Q9H... 62 5e-09
ref|NP_661851.1| (NC_002932) conserved hypothetical protein... 62 6e-09
ref|NP_246550.1| (NC_002663) unknown [Pasteurella multocida... 61 1e-08
ref|NP_460716.1| (NC_003197) putative TPR repeat protein [S... 59 3e-08
ref|NP_541444.1| (NC_003318) TETRATRICOPEPTIDE REPEAT FAMIL... 59 3e-08
ref|NP_286370.1| (NC_002655) ybeQ gene product [Escherichia... 59 5e-08
gb|AAH11926.1|AAH11926 (BC011926) Similar to KIAA0141 gene ... 57 2e-07
ref|NP_055588.1| (NM_014773) KIAA0141 gene product [Homo sa... 57 2e-07
ref|NP_455743.1| (NC_003198) putative secreted protein [Sal... 57 2e-07
ref|NP_224155.1| (NC_000921) putative [Helicobacter pylori ... 57 2e-07
gb|AAH07855.1|AAH07855 (BC007855) KIAA0141 gene product [Ho... 57 2e-07
ref|NP_106249.1| (NC_002678) unknown protein [Mesorhizobium... 56 3e-07
ref|NP_564049.1| (NM_101684) expressed protein [Arabidopsis... 56 3e-07
ref|NP_245305.1| (NC_002663) unknown [Pasteurella multocida... 56 3e-07
ref|NP_506144.1| (NM_073743) Yeast hypothetical gene L8167.... 55 4e-07
gb|AAC47112.1| (U50828) sel-1 gene product [Caenorhabditis ... 55 4e-07
gb|AAM66148.1|AF326627_1 (AF326627) JHP1437-like protein [H... 55 8e-07
gb|AAM66151.1|AF326630_1 (AF326630) JHP1437-like protein [H... 55 8e-07
ref|NP_531202.1| (NC_003304) conserved hypothetical protein... 54 1e-06
ref|NP_353527.1| (NC_003062) AGR_C_883p [Agrobacterium tume... 54 1e-06
gb|AAK64159.1| (AY039982) unknown protein [Arabidopsis thal... 54 1e-06
dbj|BAB22100.1| (AK002437) data source:SPTR, source key:Q14... 52 5e-06
ref|NP_249051.1| (NC_002516) hypothetical protein [Pseudomo... 50 1e-05
ref|NP_420846.1| (NC_002696) conserved hypothetical protein... 50 2e-05
gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [H... 48 9e-05
gb|AAG30966.1|AC012396_2 (AC012396) hypothetical protein, 3... 48 9e-05
ref|NP_177498.1| (NM_106015) hypothetical protein [Arabidop... 48 9e-05
ref|NP_102363.1| (NC_002678) hypothetical protein [Mesorhiz... 47 2e-04
ref|NP_455031.1| (NC_003198) probable secreted protein [Sal... 45 5e-04
dbj|BAA19847.1| (AB003310) chitin synthase regulatory facto... 45 8e-04
ref|NP_662672.1| (NC_002932) conserved hypothetical protein... 45 8e-04
ref|NP_253206.1| (NC_002516) hypothetical protein [Pseudomo... 44 0.001
ref|NP_103302.1| (NC_002678) unknown protein [Mesorhizobium... 44 0.001
ref|NP_459433.1| (NC_003197) putative periplasmic protein [... 44 0.002
ref|NP_286374.1| (NC_002655) orf, hypothetical protein [Esc... 44 0.002
ref|NP_415180.1| (NC_000913) orf, hypothetical protein [Esc... 44 0.002
ref|NP_102763.1| (NC_002678) exopolysaccharide regulatory p... 44 0.002
gb|EAA03532.1| (AAAB01008794) agCP14246 [Anopheles gambiae ... 43 0.002
ref|NP_405544.1| (NC_003143) putative exported protein [Yer... 43 0.003
ref|NP_540011.1| (NC_003317) EXOPOLYSACCHARIDE PRODUCTION N... 43 0.003
pir||T38028 hypothetical protein SPAC1B3.10c - fission yeas... 43 0.003
ref|NP_594794.1| (NC_003424) hypothetical protein [Schizosa... 43 0.003
ref|NP_521481.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 42 0.004
ref|NP_473246.1| (NC_000521) predicted using hexExon; MAL3P... 42 0.004
gb|EAA08334.1| (AAAB01008879) agCP2877 [Anopheles gambiae s... 42 0.004
ref|NP_439767.1| (NC_000907) H. influenzae predicted coding... 42 0.005
ref|NP_564992.1| (NM_105727) expressed protein [Arabidopsis... 42 0.005
gb|AAF45339.1| (AE003066) CG13865 gene product [Drosophila ... 42 0.007
dbj|BAA23166.1| (D83080) mercuric resistance protein [Pseud... 42 0.007
ref|NP_455035.1| (NC_003198) conserved hypothetical protein... 42 0.007
>ref|NP_207422.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64598 hypothetical protein HP0628 - Helicobacter pylori (strain 26695)
gb|AAD07699.1| (AE000577) H. pylori predicted coding region HP0628 [Helicobacter
pylori 26695]
Length = 225
Score = 484 bits (1247), Expect = e-136
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG 60
MGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG
Sbjct: 1 MGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG 60
Query: 61 VPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM 120
VPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM
Sbjct: 61 VPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM 120
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL
Sbjct: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
Query: 181 DLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGRLFMPYNSYDIP 225
DLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGRLFMPYNSYDIP
Sbjct: 181 DLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGRLFMPYNSYDIP 225
>ref|NP_223289.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71914 hypothetical protein jhp0571 - Helicobacter pylori (strain J99)
gb|AAD06154.1| (AE001490) putative [Helicobacter pylori J99]
Length = 352
Score = 480 bits (1235), Expect = e-135
Identities = 222/225 (98%), Positives = 224/225 (98%)
Query: 1 MGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG 60
MGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG
Sbjct: 128 MGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG 187
Query: 61 VPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM 120
VPKDYYKA+SYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM
Sbjct: 188 VPKDYYKAMSYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM 247
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL
Sbjct: 248 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 307
Query: 181 DLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGRLFMPYNSYDIP 225
DLFSYACDNGFESSCRNYGNFKEHLL VNPNYGRLFMPYNSY+IP
Sbjct: 308 DLFSYACDNGFESSCRNYGNFKEHLLHVNPNYGRLFMPYNSYEIP 352
Score = 97.4 bits (241), Expect = 1e-19
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 64 DYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCA 123
DY A + SC+NGN GC+ +G M N GI +L + C+ GD CA
Sbjct: 82 DYQGAFKLFSQSCDNGNAAGCFAVGAM--YANGVGIQTNRLKAARYYEMGCSGGDATACA 139
Query: 124 NLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLF 183
NL +Y N + A + + +AC GG + +CNNLG ++ G GVP+D +A+ +
Sbjct: 140 NLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAMSYY 199
Query: 184 SYACDNGFESSCRN----------YGNFKEHLLRVNPNY 212
++C+NG + C N YG K L +V+ NY
Sbjct: 200 KFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNY 238
>ref|NP_222869.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71968 hypothetical protein jhp0148 - Helicobacter pylori (strain J99)
gb|AAD05729.1| (AE001453) putative [Helicobacter pylori J99]
Length = 305
Score = 99.8 bits (247), Expect = 2e-20
Identities = 58/196 (29%), Positives = 97/196 (48%), Gaps = 6/196 (3%)
Query: 2 GCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGV 61
GC+ + ACA+L MYE+ D A+ Y C ++C +LG+M+ NG+GV
Sbjct: 90 GCNLRNHLACASLGSMYEDGDGVQK-DFPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGV 148
Query: 62 PKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL-ACNAGDMM 120
++Y KA+S+ K++C + C +G M + G++K L + N+ C+ D
Sbjct: 149 KQNYAKALSFSKYACSLNYGISCNFVGYM--YKSAKGVEK-DLKKALANFKRGCHLKDGA 205
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
C +LG++Y G + N A ++ C C+N+ V+Y G G P+D ++A
Sbjct: 206 SCVSLGYLYEAG-MDVKQNEEQALNLYKKGCSLKEGSGCHNVAVMYYTGKGAPKDLEKAT 264
Query: 181 DLFSYACDNGFESSCR 196
+ C GF SC+
Sbjct: 265 SYYKKGCALGFSGSCK 280
Score = 90.9 bits (224), Expect = 1e-17
Identities = 59/195 (30%), Positives = 92/195 (46%), Gaps = 4/195 (2%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C+ C +L MYE D N + A+ Y C + LAC +LG M+ +G GV
Sbjct: 55 CNLRMGVGCTSLGSMYEYGDGVDQNISK-AVFYYRRGCNLRNHLACASLGSMYEDGDGVQ 113
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
KD+ KAI YY+ C + C +LG M N G+ + + + AC+ + C
Sbjct: 114 KDFPKAIYYYRRGCHLKGGVSCGSLGFM--YFNGTGVKQNYAKALSFSKYACSLNYGISC 171
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
+G++Y + G + A F+ C SC +LG LY+ G+ V Q++++AL+L
Sbjct: 172 NFVGYMYKSAK-GVEKDLKKALANFKRGCHLKDGASCVSLGYLYEAGMDVKQNEEQALNL 230
Query: 183 FSYACDNGFESSCRN 197
+ C S C N
Sbjct: 231 YKKGCSLKEGSGCHN 245
Score = 77.8 bits (190), Expect = 8e-14
Identities = 53/184 (28%), Positives = 83/184 (44%), Gaps = 3/184 (1%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D A+ Y +C + C +LG M+ G GV ++ KA+ YY+ C N + C +L
Sbjct: 43 DYHRAVAFYKRSCNLRMGVGCTSLGSMYEYGDGVDQNISKAVFYYRRGCNLRNHLACASL 102
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYF 147
G M + G+ K + C+ + C +LG++Y NG G N A +
Sbjct: 103 GSMYEDGD--GVQKDFPKAIYYYRRGCHLKGGVSCGSLGFMYFNG-TGVKQNYAKALSFS 159
Query: 148 QMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLR 207
+ AC SCN +G +Y+ GV +D ++AL F C +SC + G E +
Sbjct: 160 KYACSLNYGISCNFVGYMYKSAKGVEKDLKKALANFKRGCHLKDGASCVSLGYLYEAGMD 219
Query: 208 VNPN 211
V N
Sbjct: 220 VKQN 223
Score = 75.5 bits (184), Expect = 4e-13
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 8/178 (4%)
Query: 2 GCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGV 61
GC +C +L MY N N + AL AC ++CN +G+M+ + GV
Sbjct: 126 GCHLKGGVSCGSLGFMYFNGTGVKQNYAK-ALSFSKYACSLNYGISCNFVGYMYKSAKGV 184
Query: 62 PKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDM 119
KD KA++ +K C + C +LG + G+D Q + LN C+ +
Sbjct: 185 EKDLKKALANFKRGCHLKDGASCVSLGYLYEA----GMDVKQNEEQALNLYKKGCSLKEG 240
Query: 120 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQ 177
GC N+ +Y G GAP + A Y++ C G GSC L V+ ++ + D Q
Sbjct: 241 SGCHNVAVMYYTGK-GAPKDLEKATSYYKKGCALGFSGSCKVLEVIGKESDNLQDDAQ 297
Score = 45.4 bits (106), Expect = 5e-04
Identities = 30/102 (29%), Positives = 48/102 (46%), Gaps = 1/102 (0%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
+CN +GC +LG +Y GD G N A Y++ C+ +C +LG +Y+ G GV
Sbjct: 54 SCNLRMGVGCTSLGSMYEYGD-GVDQNISKAVFYYRRGCNLRNHLACASLGSMYEDGDGV 112
Query: 173 PQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGR 214
+D +A+ + C SC + G + V NY +
Sbjct: 113 QKDFPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAK 154
>ref|NP_207033.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||C64549 conserved hypothetical secreted protein HP0235 - Helicobacter
pylori (strain 26695)
gb|AAD07303.1| (AE000543) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 355
Score = 99.0 bits (245), Expect = 4e-20
Identities = 68/230 (29%), Positives = 95/230 (40%), Gaps = 34/230 (14%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C+ G + C L +YEN + D + AL+ Y ACQ D C LG ++ G G
Sbjct: 54 CNDGVSEGCTQLGIIYENGQGTRI-DYKKALEYYKTACQADDREGCFGLGGLYDEGLGTT 112
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGL------------------------MSNVNNIYG 98
++Y +AI Y +C + CYNLG+ M+ + G
Sbjct: 113 QNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNADQAVTYYQKSCNFDMAKGCYVLG 172
Query: 99 I--DKAQLSQVDLNYLA-------CNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQM 149
+ +K L N+ A C D C LG ++ NGD G + A Y Q
Sbjct: 173 VAYEKGFLEVKQSNHKAVIYYLKACRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQK 232
Query: 150 ACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYG 199
AC G C +LG +Y G V +D Q+A + F ACD G SC G
Sbjct: 233 ACGLNNSGGCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMG 282
Score = 84.0 bits (206), Expect = 1e-15
Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 6/185 (3%)
Query: 21 KKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGN 80
+K S + A + AC G C LG ++ NG G DY KA+ YYK +C+ +
Sbjct: 35 EKAYKSGNYSKATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADD 94
Query: 81 DMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNN 140
GC+ LG + + G + +D AC C NLG IY G N
Sbjct: 95 REGCFGLGGLYDEG--LGTTQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKG---NA 149
Query: 141 HYAAKYFQMACDGGILGSCNNLGVLYQKG-LGVPQDDQRALDLFSYACDNGFESSCRNYG 199
A Y+Q +C+ + C LGV Y+KG L V Q + +A+ + AC +CR G
Sbjct: 150 DQAVTYYQKSCNFDMAKGCYVLGVAYEKGFLEVKQSNHKAVIYYLKACRLDDGQACRALG 209
Query: 200 NFKEH 204
+ E+
Sbjct: 210 SLFEN 214
Score = 65.5 bits (158), Expect = 4e-10
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C D AC L ++EN D E A AC + C +LG M+ G V
Sbjct: 197 CRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSGGCASLGSMYMLGRYVK 256
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
KD KA +++K +C+ G+ + C +G M + + + K +D C+ GD +GC
Sbjct: 257 KDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGD--AVPKDLRKALDNYERGCDMGDEVGC 314
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 162
L +Y N + A + C G+ +C NL
Sbjct: 315 FALAGMYYN-----MKDKENAIMIYDKGCKLGMKQACENL 349
Score = 65.5 bits (158), Expect = 4e-10
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
ACN G GC LG IY NG G ++ A +Y++ AC C LG LY +GLG
Sbjct: 53 ACNDGVSEGCTQLGIIYENGQ-GTRIDYKKALEYYKTACQADDREGCFGLGGLYDEGLGT 111
Query: 173 PQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVN 209
Q+ Q A+D ++ AC SC N G + ++ N
Sbjct: 112 TQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGN 148
Score = 50.1 bits (118), Expect = 2e-05
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 139 NNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNY 198
N A YF+ AC+ G+ C LG++Y+ G G D ++AL+ + AC C
Sbjct: 42 NYSKATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGL 101
Query: 199 GNFKEHLLRVNPNY 212
G + L NY
Sbjct: 102 GGLYDEGLGTTQNY 115
Score = 43.1 bits (100), Expect = 0.002
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 2 GCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNL 51
GC GD C LA MY N K DKENA+ +Y C+ G AC NL
Sbjct: 305 GCDMGDEVGCFALAGMYYNMK-----DKENAIMIYDKGCKLGMKQACENL 349
>gb|AAL47062.1|AF326614_1 (AF326614) JHP318-like protein [Helicobacter pylori]
Length = 216
Score = 98.2 bits (243), Expect = 6e-20
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 4/193 (2%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C L +Y++ K + N A Y+ AC + + C LG ++ +G V
Sbjct: 22 CGLNNGGGCGALGDLYDDGKGVEKN-LIKAAYFYSKACDLKEGMGCKRLGSLYYHGRDVE 80
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
K+ KA +Y +C+ N GC NLG++ G++K + AC D +GC
Sbjct: 81 KNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGE--GVEKNLIKAAQFYSKACELKDGLGC 138
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
+LG +Y NG+ G + AA + ACD C NLG LY G GV +D +A
Sbjct: 139 KDLGTLYYNGE-GVEKDLIKAAYLYSKACDLKEGLGCFNLGALYYNGKGVEKDLTKAAYF 197
Query: 183 FSYACDNGFESSC 195
+S AC G + +C
Sbjct: 198 YSKACKLGSQEAC 210
Score = 82.0 bits (201), Expect = 4e-15
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 3/178 (1%)
Query: 22 KNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGND 81
K++++ D A + + AC + C LG ++ +G GV K+ KA +Y +C+
Sbjct: 4 KSSEAKDYIQAKKYFEKACGLNNGGGCGALGDLYDDGKGVEKNLIKAAYFYSKACDLKEG 63
Query: 82 MGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNH 141
MGC LG S + ++K AC+ + GC NLG +Y G+ G N
Sbjct: 64 MGCKRLG--SLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGE-GVEKNLI 120
Query: 142 YAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYG 199
AA+++ AC+ C +LG LY G GV +D +A L+S ACD C N G
Sbjct: 121 KAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACDLKEGLGCFNLG 178
Score = 77.8 bits (190), Expect = 8e-14
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C L +Y + ++ + N A Y+ AC + C NLG ++ G GV
Sbjct: 58 CDLKEGMGCKRLGSLYYHGRDVEKN-LTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVE 116
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
K+ KA +Y +CE + +GC +LG + N G++K + L AC+ + +GC
Sbjct: 117 KNLIKAAQFYSKACELKDGLGCKDLGTL--YYNGEGVEKDLIKAAYLYSKACDLKEGLGC 174
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 162
NLG +Y NG G + AA ++ AC G +C L
Sbjct: 175 FNLGALYYNGK-GVEKDLTKAAYFYSKACKLGSQEACEAL 213
Score = 42.4 bits (98), Expect = 0.004
Identities = 25/69 (36%), Positives = 32/69 (46%)
Query: 143 AAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFK 202
A KYF+ AC G C LG LY G GV ++ +A +S ACD C+ G+
Sbjct: 14 AKKYFEKACGLNNGGGCGALGDLYDDGKGVEKNLIKAAYFYSKACDLKEGMGCKRLGSLY 73
Query: 203 EHLLRVNPN 211
H V N
Sbjct: 74 YHGRDVEKN 82
>gb|AAB63298.1| (AF008565) Orf2 [Helicobacter pylori]
Length = 250
Score = 98.2 bits (243), Expect = 6e-20
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 8/193 (4%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C L YE K D + A+Q Y +C+ D CN LG ++ NG GV
Sbjct: 56 CELKNGFGCVFLGAFYEEGKGV-GKDLKKAIQFYTKSCELNDGYGCNLLGNLYYNGQGVS 114
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
KD KA YY +C+ + GC LG + + G K +DL AC+ D GC
Sbjct: 115 KDAKKASQYYSKACDLNHAEGCMVLGSLHHYG--VGTPKDLRKALDLYEKACDLKDSPGC 172
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
N G+IY+ N A + AC+ C NLGV+ G +D+++A++
Sbjct: 173 INAGYIYS-----VTKNFKEAIVRYSQACELNDGRGCYNLGVMQYNAQGTAKDEKQAVEN 227
Query: 183 FSYACDNGFESSC 195
F C +G + +C
Sbjct: 228 FKKGCKSGVKEAC 240
Score = 77.8 bits (190), Expect = 8e-14
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 59 SGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGD 118
S +D+ +A ++++ +CE N GC LG G+ K + +C D
Sbjct: 39 SAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGK--GVGKDLKKAIQFYTKSCELND 96
Query: 119 MMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQR 178
GC LG +Y NG G + A++Y+ ACD C LG L+ G+G P+D ++
Sbjct: 97 GYGCNLLGNLYYNGQ-GVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRK 155
Query: 179 ALDLFSYACDNGFESSCRNYG-------NFKEHLLR 207
ALDL+ ACD C N G NFKE ++R
Sbjct: 156 ALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVR 191
>gb|AAC24210.1| (AF053708) cysteine-rich protein; HcpA [Helicobacter pylori]
Length = 250
Score = 98.2 bits (243), Expect = 6e-20
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 8/193 (4%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C L YE K D + A+Q Y +C+ D CN LG ++ NG GV
Sbjct: 56 CELKNGFGCVFLGAFYEEGKGV-GKDLKKAIQFYTKSCELNDGYGCNLLGNLYYNGQGVS 114
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
KD KA YY +C+ + GC LG + + G K +DL AC+ D GC
Sbjct: 115 KDAKKASQYYSKACDLNHAEGCMVLGSLHHYG--VGTPKDLRKALDLYEKACDLKDSPGC 172
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
N G+IY+ N A + AC+ C NLGV+ G +D+++A++
Sbjct: 173 INAGYIYS-----VTKNFKEAIVRYSQACELNDGRGCYNLGVMQYNAQGTAKDEKQAVEN 227
Query: 183 FSYACDNGFESSC 195
F C +G + +C
Sbjct: 228 FKKGCKSGVKEAC 240
Score = 77.8 bits (190), Expect = 8e-14
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 59 SGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGD 118
S +D+ +A ++++ +CE N GC LG G+ K + +C D
Sbjct: 39 SAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGK--GVGKDLKKAIQFYTKSCELND 96
Query: 119 MMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQR 178
GC LG +Y NG G + A++Y+ ACD C LG L+ G+G P+D ++
Sbjct: 97 GYGCNLLGNLYYNGQ-GVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRK 155
Query: 179 ALDLFSYACDNGFESSCRNYG-------NFKEHLLR 207
ALDL+ ACD C N G NFKE ++R
Sbjct: 156 ALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVR 191
>ref|NP_206959.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||H64539 conserved hypothetical secreted protein HP0160 - Helicobacter
pylori (strain 26695)
gb|AAD07230.1| (AE000537) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 306
Score = 97.8 bits (242), Expect = 8e-20
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Query: 2 GCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGV 61
GC+ + ACA+L MYE+ N A+ Y C ++C +LG+M+ NG+GV
Sbjct: 90 GCNLRNHLACASLGSMYEDGDGVQKN-LPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGV 148
Query: 62 PKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL-ACNAGDMM 120
++Y KA+ K++C + C +G M N G+ K L + N+ C+ D
Sbjct: 149 KQNYAKALFLSKYACSLNYGISCNFVGYM--YRNAKGVQK-DLKKALANFKRGCHLKDGA 205
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
C +LG++Y G + N A ++ C C+N+ V+Y G GVP+D +A+
Sbjct: 206 SCVSLGYMYEVG-MDVKQNGEQALNLYKKGCYLKRGSGCHNVAVMYYTGKGVPKDLDKAI 264
Query: 181 DLFSYACDNGFESSCR 196
+ C GF SC+
Sbjct: 265 SYYKKGCTLGFSGSCK 280
Score = 87.0 bits (214), Expect = 1e-16
Identities = 59/195 (30%), Positives = 92/195 (46%), Gaps = 4/195 (2%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C+ C +L MYE+ D N + A+ Y C + LAC +LG M+ +G GV
Sbjct: 55 CNLRVGVGCTSLGSMYEDGDGVDQNITK-AVFYYRRGCNLRNHLACASLGSMYEDGDGVQ 113
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
K+ KAI YY+ C + C +LG M N G+ + + L+ AC+ + C
Sbjct: 114 KNLPKAIYYYRRGCHLKGGVSCGSLGFM--YFNGTGVKQNYAKALFLSKYACSLNYGISC 171
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
+G++Y N G + A F+ C SC +LG +Y+ G+ V Q+ ++AL+L
Sbjct: 172 NFVGYMYRNAK-GVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQALNL 230
Query: 183 FSYACDNGFESSCRN 197
+ C S C N
Sbjct: 231 YKKGCYLKRGSGCHN 245
Score = 76.3 bits (186), Expect = 2e-13
Identities = 53/184 (28%), Positives = 83/184 (44%), Gaps = 3/184 (1%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D A+ Y +C + C +LG M+ +G GV ++ KA+ YY+ C N + C +L
Sbjct: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYF 147
G M + G+ K + C+ + C +LG++Y NG G N A
Sbjct: 103 GSMYEDGD--GVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNG-TGVKQNYAKALFLS 159
Query: 148 QMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLR 207
+ AC SCN +G +Y+ GV +D ++AL F C +SC + G E +
Sbjct: 160 KYACSLNYGISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMD 219
Query: 208 VNPN 211
V N
Sbjct: 220 VKQN 223
Score = 74.7 bits (182), Expect = 7e-13
Identities = 56/177 (31%), Positives = 77/177 (42%), Gaps = 8/177 (4%)
Query: 2 GCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGV 61
GC +C +L MY N N + AL L AC ++CN +G+M+ N GV
Sbjct: 126 GCHLKGGVSCGSLGFMYFNGTGVKQNYAK-ALFLSKYACSLNYGISCNFVGYMYRNAKGV 184
Query: 62 PKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDM 119
KD KA++ +K C + C +LG M V G+D Q + LN C
Sbjct: 185 QKDLKKALANFKRGCHLKDGASCVSLGYMYEV----GMDVKQNGEQALNLYKKGCYLKRG 240
Query: 120 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDD 176
GC N+ +Y G G P + A Y++ C G GSC L + K QDD
Sbjct: 241 SGCHNVAVMYYTGK-GVPKDLDKAISYYKKGCTLGFSGSCKVLEEVIGKKSDDLQDD 296
Score = 43.9 bits (102), Expect = 0.001
Identities = 29/102 (28%), Positives = 49/102 (47%), Gaps = 1/102 (0%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
+CN +GC +LG +Y +GD G N A Y++ C+ +C +LG +Y+ G GV
Sbjct: 54 SCNLRVGVGCTSLGSMYEDGD-GVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGV 112
Query: 173 PQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGR 214
++ +A+ + C SC + G + V NY +
Sbjct: 113 QKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAK 154
>ref|NP_222941.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71958 hypothetical protein jhp0220 - Helicobacter pylori (strain J99)
gb|AAD05807.1| (AE001460) putative [Helicobacter pylori J99]
Length = 355
Score = 96.3 bits (238), Expect = 2e-19
Identities = 66/230 (28%), Positives = 96/230 (41%), Gaps = 34/230 (14%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C+ G + C L +YEN + D + AL+ Y ACQ D C LG ++ G G
Sbjct: 54 CNDGVSEGCTQLGIIYENGQGTRI-DYKKALEYYKTACQADDREGCFGLGGLYDEGLGTA 112
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSN----------------------------VN 94
++Y +AI Y +C + CYNLG++ + +
Sbjct: 113 QNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGNAAQAVTYYQKSCNFDMAKGCYILG 172
Query: 95 NIYGIDKAQLSQVD----LNYL-ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQM 149
Y ++ Q + + YL AC + C LG ++ NGD G + A Y Q
Sbjct: 173 TAYEKGFLEVKQSNHKAVIYYLKACRLNEGQACRALGSLFENGDAGLDEDFEVAFDYLQK 232
Query: 150 ACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYG 199
AC G C +LG +Y G V +D Q+A + F ACD G SC G
Sbjct: 233 ACALNNSGGCASLGSMYMLGRYVKKDPQKAFNYFKQACDMGSAVSCSRMG 282
Score = 82.8 bits (203), Expect = 3e-15
Identities = 58/182 (31%), Positives = 83/182 (44%), Gaps = 10/182 (5%)
Query: 26 SNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCY 85
S + A + AC G C LG ++ NG G DY KA+ YYK +C+ + GC+
Sbjct: 40 SGNYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCF 99
Query: 86 NLGLMSNVNNIYGIDKAQLSQ--VDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYA 143
LG + + G+ AQ Q +D AC C NLG IY G N A
Sbjct: 100 GLGGLYD----EGLGTAQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKG---NAAQA 152
Query: 144 AKYFQMACDGGILGSCNNLGVLYQKG-LGVPQDDQRALDLFSYACDNGFESSCRNYGNFK 202
Y+Q +C+ + C LG Y+KG L V Q + +A+ + AC +CR G+
Sbjct: 153 VTYYQKSCNFDMAKGCYILGTAYEKGFLEVKQSNHKAVIYYLKACRLNEGQACRALGSLF 212
Query: 203 EH 204
E+
Sbjct: 213 EN 214
Score = 66.2 bits (160), Expect = 3e-10
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + AC L ++EN D E A AC + C +LG M+ G V
Sbjct: 197 CRLNEGQACRALGSLFENGDAGLDEDFEVAFDYLQKACALNNSGGCASLGSMYMLGRYVK 256
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
KD KA +Y+K +C+ G+ + C +G M + + + K +D C+ GD +GC
Sbjct: 257 KDPQKAFNYFKQACDMGSAVSCSRMGFMYSQGDT--VSKDLRKALDNYERGCDMGDEVGC 314
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 162
L +Y N + A + C G+ +C NL
Sbjct: 315 FALAGMYYN-----MKDKENAIMIYDKGCKLGMKQACENL 349
Score = 65.5 bits (158), Expect = 4e-10
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
ACN G GC LG IY NG G ++ A +Y++ AC C LG LY +GLG
Sbjct: 53 ACNDGVSEGCTQLGIIYENGQ-GTRIDYKKALEYYKTACQADDREGCFGLGGLYDEGLGT 111
Query: 173 PQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVN 209
Q+ Q A+D ++ AC SC N G + ++ N
Sbjct: 112 AQNYQEAIDAYAKACVLKHPESCYNLGIIYDRKIKGN 148
Score = 50.8 bits (120), Expect = 1e-05
Identities = 24/74 (32%), Positives = 35/74 (46%)
Query: 139 NNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNY 198
N AA YF+ AC+ G+ C LG++Y+ G G D ++AL+ + AC C
Sbjct: 42 NYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGL 101
Query: 199 GNFKEHLLRVNPNY 212
G + L NY
Sbjct: 102 GGLYDEGLGTAQNY 115
Score = 43.1 bits (100), Expect = 0.002
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 2 GCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNL 51
GC GD C LA MY N K DKENA+ +Y C+ G AC NL
Sbjct: 305 GCDMGDEVGCFALAGMYYNMK-----DKENAIMIYDKGCKLGMKQACENL 349
>ref|NP_222918.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMM1|HCPA_HELPJ HcpA protein precursor (Cysteine-rich 28 kDa protein)
pir||B71961 hypothetical protein jhp0197 - Helicobacter pylori (strain J99)
gb|AAD05781.1| (AE001458) putative [Helicobacter pylori J99]
Length = 250
Score = 95.1 bits (235), Expect = 5e-19
Identities = 60/193 (31%), Positives = 85/193 (43%), Gaps = 8/193 (4%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C L YE K D + A+Q Y C+ D C LG ++ NG GV
Sbjct: 56 CELKEGFGCVFLGAFYEEGKGV-GKDLKKAIQFYTKGCELNDGYGCRLLGNLYYNGQGVS 114
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
KD KA YY SCE + GC LG + + G K +DL AC+ D GC
Sbjct: 115 KDAKKASQYYSKSCELNHAEGCTVLGSLHHYG--VGTPKDLRKALDLYEKACDLKDSPGC 172
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
N G++Y G N A + AC+ C NLGV+ G +D+++A++
Sbjct: 173 INAGYMY-----GVAKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVEN 227
Query: 183 FSYACDNGFESSC 195
F C + + +C
Sbjct: 228 FKKGCKSSVKEAC 240
Score = 74.3 bits (181), Expect = 9e-13
Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 8/161 (4%)
Query: 2 GCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGV 61
GC D C L +Y N + S D + A Q Y+ +C+ C LG + G G
Sbjct: 91 GCELNDGYGCRLLGNLYYNGQGV-SKDAKKASQYYSKSCELNHAEGCTVLGSLHHYGVGT 149
Query: 62 PKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMG 121
PKD KA+ Y+ +C+ + GC N G M YG+ K + AC D G
Sbjct: 150 PKDLRKALDLYEKACDLKDSPGCINAGYM------YGVAKNFKEAIVRYSKACELKDGRG 203
Query: 122 CANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 162
C NLG + N G + A + F+ C + +C+ L
Sbjct: 204 CYNLGVMQYNAQ-GTAKDEKQAVENFKKGCKSSVKEACDAL 243
Score = 73.2 bits (178), Expect = 2e-12
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
+D+ +A ++++ +CE GC LG G+ K + C D GC
Sbjct: 43 QDFAQAKAHFEKACELKEGFGCVFLGAFYEEGK--GVGKDLKKAIQFYTKGCELNDGYGC 100
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG +Y NG G + A++Y+ +C+ C LG L+ G+G P+D ++ALDL
Sbjct: 101 RLLGNLYYNGQ-GVSKDAKKASQYYSKSCELNHAEGCTVLGSLHHYGVGTPKDLRKALDL 159
Query: 183 FSYACDNGFESSCRNYG-------NFKEHLLR 207
+ ACD C N G NFKE ++R
Sbjct: 160 YEKACDLKDSPGCINAGYMYGVAKNFKEAIVR 191
>ref|NP_207009.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
sp|O25001|HCPA_HELPY HcpA protein precursor (Cysteine-rich 28 kDa protein)
pir||C64546 conserved hypothetical secreted protein HP0211 - Helicobacter
pylori (strain 26695)
gb|AAD07279.1| (AE000541) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 250
Score = 94.4 bits (233), Expect = 9e-19
Identities = 59/193 (30%), Positives = 86/193 (43%), Gaps = 8/193 (4%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C L YE K D + A+Q Y C+ D CN LG ++ NG GV
Sbjct: 56 CELKNGFGCVFLGAFYEEGKGV-GKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNGQGVS 114
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
KD KA YY +C+ + GC LG + + G K +DL AC+ D GC
Sbjct: 115 KDAKKASQYYSKACDLNHAEGCMVLGSLHHYG--VGTPKDLRKALDLYEKACDLKDSPGC 172
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
N G+IY+ N A + AC+ C NLGV+ G +D+++A++
Sbjct: 173 INAGYIYS-----VTKNFKEAIVRYSKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVEN 227
Query: 183 FSYACDNGFESSC 195
F C + + +C
Sbjct: 228 FKKGCKSSVKEAC 240
Score = 77.4 bits (189), Expect = 1e-13
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 10/156 (6%)
Query: 59 SGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGD 118
S +D+ +A ++++ +CE N GC LG G+ K + C D
Sbjct: 39 SAKKQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGK--GVGKDLKKAIQFYTKGCELND 96
Query: 119 MMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQR 178
GC LG +Y NG G + A++Y+ ACD C LG L+ G+G P+D ++
Sbjct: 97 GYGCNLLGNLYYNGQ-GVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRK 155
Query: 179 ALDLFSYACDNGFESSCRNYG-------NFKEHLLR 207
ALDL+ ACD C N G NFKE ++R
Sbjct: 156 ALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVR 191
>ref|NP_207889.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||B64657 conserved hypothetical secreted protein HP1098 - Helicobacter
pylori (strain 26695)
gb|AAD08141.1| (AE000616) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 290
Score = 90.9 bits (224), Expect = 1e-17
Identities = 65/203 (32%), Positives = 91/203 (44%), Gaps = 11/203 (5%)
Query: 22 KNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGND 81
K+ D A + + AC + C NLG ++ G GV K+ KA S+Y +C+
Sbjct: 38 KSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS 97
Query: 82 MGCYNLGLMSNVNNIY--GIDKAQLSQVDLNYL--ACNAGDMMGCANLGWIYANGDLGAP 137
GC+ LG N+Y G +Q + L Y AC+ GCA+LG IY +G +
Sbjct: 98 NGCHLLG------NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKV-VT 150
Query: 138 LNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRN 197
+ A +YF ACD C LG LY G G P+D ++AL + ACD C N
Sbjct: 151 RDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFN 210
Query: 198 YGNFKEHLLRVNPNYGRLFMPYN 220
GN H N+ Y+
Sbjct: 211 AGNMYHHGEGATKNFKEALARYS 233
Score = 85.5 bits (210), Expect = 4e-16
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 6/194 (3%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C L +Y + + N + ALQ Y+ AC C +LG ++ +G V
Sbjct: 92 CDLNYSNGCHLLGNLYYSGQGVSQNTNK-ALQYYSKACDLKYAEGCASLGGIYHDGKVVT 150
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGID-KAQLSQVDLNYLACNAGDMMG 121
+D+ KA+ Y+ +C+ + GC LG + + D K L+ D AC+ D G
Sbjct: 151 RDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDK---ACDLKDSPG 207
Query: 122 CANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALD 181
C N G +Y +G+ GA N A + AC+ G C NLG + G GV +++++A++
Sbjct: 208 CFNAGNMYHHGE-GATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIE 266
Query: 182 LFSYACDNGFESSC 195
F C G + +C
Sbjct: 267 NFKKGCKLGAKGAC 280
Score = 79.7 bits (195), Expect = 2e-14
Identities = 58/197 (29%), Positives = 89/197 (44%), Gaps = 4/197 (2%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + + C NL +Y + + N K+ A YA AC C+ LG ++ +G GV
Sbjct: 56 CDLKENSGCFNLGVLYYQGQGVEKNLKK-AASFYAKACDLNYSNGCHLLGNLYYSGQGVS 114
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
++ KA+ YY +C+ GC +LG + + + D + V+ AC+ D GC
Sbjct: 115 QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKA--VEYFTKACDLNDGDGC 172
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG +Y G G P + A + ACD C N G +Y G G ++ + AL
Sbjct: 173 TILGSLYDAGR-GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALAR 231
Query: 183 FSYACDNGFESSCRNYG 199
+S AC+ C N G
Sbjct: 232 YSKACELENGGGCFNLG 248
>ref|NP_223741.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71859 hypothetical protein jhp1024 - Helicobacter pylori (strain J99)
gb|AAD06595.1| (AE001530) putative [Helicobacter pylori J99]
Length = 290
Score = 90.5 bits (223), Expect = 1e-17
Identities = 63/187 (33%), Positives = 87/187 (45%), Gaps = 11/187 (5%)
Query: 22 KNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGND 81
K+ D A + + AC + C NLG ++ G GV K+ KA S+Y +C+
Sbjct: 38 KSYKEQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGHGVEKNLKKAASFYSKACDLNYS 97
Query: 82 MGCYNLGLMSNVNNIY--GIDKAQLSQVDLNYL--ACNAGDMMGCANLGWIYANGDLGAP 137
GC+ LG N+Y G +Q + L Y AC+ GCA+LG IY +G +
Sbjct: 98 NGCHLLG------NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKV-VT 150
Query: 138 LNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRN 197
+ A +YF ACD C LG LY G G P+D ++AL + ACD C N
Sbjct: 151 RDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFN 210
Query: 198 YGNFKEH 204
GN H
Sbjct: 211 AGNMYHH 217
Score = 84.0 bits (206), Expect = 1e-15
Identities = 56/194 (28%), Positives = 92/194 (46%), Gaps = 6/194 (3%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C L +Y + + N + ALQ Y+ AC C +LG ++ +G V
Sbjct: 92 CDLNYSNGCHLLGNLYYSGQGVSQNTNK-ALQYYSKACDLKYAEGCASLGGIYHDGKVVT 150
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGID-KAQLSQVDLNYLACNAGDMMG 121
+D+ KA+ Y+ +C+ + GC LG + + D K L+ D AC+ D G
Sbjct: 151 RDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDK---ACDLKDSPG 207
Query: 122 CANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALD 181
C N G +Y +G+ GA N A + AC+ G C NLG + G G +++++A++
Sbjct: 208 CFNAGNMYHHGE-GAAKNFKEALARYSKACELENGGGCFNLGAMQYNGEGATRNEKQAIE 266
Query: 182 LFSYACDNGFESSC 195
F C G + +C
Sbjct: 267 NFKKGCKLGAKGAC 280
Score = 77.8 bits (190), Expect = 8e-14
Identities = 57/197 (28%), Positives = 88/197 (43%), Gaps = 4/197 (2%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + + C NL +Y + N K+ A Y+ AC C+ LG ++ +G GV
Sbjct: 56 CDLKENSGCFNLGVLYYQGHGVEKNLKK-AASFYSKACDLNYSNGCHLLGNLYYSGQGVS 114
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
++ KA+ YY +C+ GC +LG + + + D + V+ AC+ D GC
Sbjct: 115 QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKA--VEYFTKACDLNDGDGC 172
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG +Y G G P + A + ACD C N G +Y G G ++ + AL
Sbjct: 173 TILGSLYDAGR-GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAAKNFKEALAR 231
Query: 183 FSYACDNGFESSCRNYG 199
+S AC+ C N G
Sbjct: 232 YSKACELENGGGCFNLG 248
Score = 52.8 bits (125), Expect = 3e-06
Identities = 28/78 (35%), Positives = 40/78 (50%)
Query: 143 AAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFK 202
A KYF+ ACD C NLGVLY +G GV ++ ++A +S ACD + + C GN
Sbjct: 48 AKKYFEKACDLKENSGCFNLGVLYYQGHGVEKNLKKAASFYSKACDLNYSNGCHLLGNLY 107
Query: 203 EHLLRVNPNYGRLFMPYN 220
V+ N + Y+
Sbjct: 108 YSGQGVSQNTNKALQYYS 125
>ref|NP_223037.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71945 hypothetical protein jhp0318 - Helicobacter pylori (strain J99)
gb|AAD05894.1| (AE001468) putative [Helicobacter pylori J99]
Length = 251
Score = 89.0 bits (219), Expect = 4e-17
Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 5/186 (2%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C+ C L +Y++ K + N A Q Y AC+ + L C L ++ G GV
Sbjct: 22 CNLNYGGGCGALGDLYDDGKGVEKN-LIKAAQPYTKACELKEGLGCERLWSLYYYGRGVE 80
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
K+ KA Y +C+ N +GC NLG + G++K + AC+ + GC
Sbjct: 81 KNLIKAAQYASKACDLNNGVGCKNLGFLYEYGE--GVEKDLIKAAQYASKACDLNNGSGC 138
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG++Y +G G N AA ++ ACD C NLG LY G GV +D + L
Sbjct: 139 DVLGFLYGSGK-GVEKNLTKAAYFYSKACDLNEGLGCFNLGGLY-NGQGVEKDLTKVAYL 196
Query: 183 FSYACD 188
+S AC+
Sbjct: 197 YSKACE 202
Score = 83.6 bits (205), Expect = 2e-15
Identities = 58/193 (30%), Positives = 84/193 (43%), Gaps = 5/193 (2%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C L +Y + + N A Q + AC + + C NLG+++ G GV
Sbjct: 58 CELKEGLGCERLWSLYYYGRGVEKN-LIKAAQYASKACDLNNGVGCKNLGFLYEYGEGVE 116
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
KD KA Y +C+ N GC LG + G++K AC+ + +GC
Sbjct: 117 KDLIKAAQYASKACDLNNGSGCDVLGFLYGSGK--GVEKNLTKAAYFYSKACDLNEGLGC 174
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
NLG +Y NG G + A + AC+ C L VLY G GV +D +A
Sbjct: 175 FNLGGLY-NGQ-GVEKDLTKVAYLYSKACELKESFGCGALAVLYINGQGVEKDLTKADQY 232
Query: 183 FSYACDNGFESSC 195
S AC G + +C
Sbjct: 233 ISKACKLGDQEAC 245
Score = 79.0 bits (193), Expect = 4e-14
Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 3/178 (1%)
Query: 22 KNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGND 81
K+ + D A + + AC C LG ++ +G GV K+ KA Y +CE
Sbjct: 4 KSNKAKDFIQAKKYFEKACNLNYGGGCGALGDLYDDGKGVEKNLIKAAQPYTKACELKEG 63
Query: 82 MGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNH 141
+GC L + G++K + AC+ + +GC NLG++Y G+ G +
Sbjct: 64 LGCERLWSLYYYGR--GVEKNLIKAAQYASKACDLNNGVGCKNLGFLYEYGE-GVEKDLI 120
Query: 142 YAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYG 199
AA+Y ACD C+ LG LY G GV ++ +A +S ACD C N G
Sbjct: 121 KAAQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSKACDLNEGLGCFNLG 178
Score = 73.6 bits (179), Expect = 2e-12
Identities = 47/160 (29%), Positives = 72/160 (44%), Gaps = 5/160 (3%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C NL +YE + + D A Q + AC + C+ LG+++ +G GV
Sbjct: 94 CDLNNGVGCKNLGFLYEYGEGVEK-DLIKAAQYASKACDLNNGSGCDVLGFLYGSGKGVE 152
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
K+ KA +Y +C+ +GC+NLG + N G++K L AC + GC
Sbjct: 153 KNLTKAAYFYSKACDLNEGLGCFNLG---GLYNGQGVEKDLTKVAYLYSKACELKESFGC 209
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 162
L +Y NG G + A +Y AC G +C L
Sbjct: 210 GALAVLYINGQ-GVEKDLTKADQYISKACKLGDQEACEAL 248
Score = 42.0 bits (97), Expect = 0.005
Identities = 31/92 (33%), Positives = 41/92 (43%), Gaps = 1/92 (1%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
ACN GC LG +Y +G G N AA+ + AC+ C L LY G GV
Sbjct: 21 ACNLNYGGGCGALGDLYDDGK-GVEKNLIKAAQPYTKACELKEGLGCERLWSLYYYGRGV 79
Query: 173 PQDDQRALDLFSYACDNGFESSCRNYGNFKEH 204
++ +A S ACD C+N G E+
Sbjct: 80 EKNLIKAAQYASKACDLNNGVGCKNLGFLYEY 111
>ref|NP_207908.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||E64659 conserved hypothetical secreted protein HP1117 - Helicobacter
pylori (strain 26695)
gb|AAD08161.1| (AE000618) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 256
Score = 84.3 bits (207), Expect = 9e-16
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 5/193 (2%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G+ A L MYEN + ++K+ A + + A NNLG M+ G GVPKD
Sbjct: 60 GEPLAYVLLGIMYENGRGVPKDEKK-AAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDE 118
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANL 125
KA+ Y++ + E G NLG+M G+ + + A + G++ L
Sbjct: 119 KKAVEYFRIATEKGYTNAYINLGIMYMEGR--GVPSNYVKATECFRKAMHKGNVEAYILL 176
Query: 126 GWIYANGD--LGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLF 183
G IY +G+ LG + A Y++MA D + L YQ GLGV +D ++A +
Sbjct: 177 GDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYQYGLGVEKDKKKAEEYM 236
Query: 184 SYACDNGFESSCR 196
ACD + +C+
Sbjct: 237 QKACDFDIDKNCK 249
Score = 75.5 bits (184), Expect = 4e-13
Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 9/190 (4%)
Query: 17 MYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSC 76
+Y+ ++ ++ + E A Y A + G+ LA LG M+ NG GVPKD KA Y++ +
Sbjct: 34 IYKGEEAYNNKEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDEKKAAEYFQKAV 93
Query: 77 ENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGA 136
+N G NLG+M G+ K + V+ +A G NLG +Y G G
Sbjct: 94 DNDIPRGYNNLGVMYKEGR--GVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEG-RGV 150
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLGVLYQKG---LGVPQDDQRALDLFSYACDNGFES 193
P N A + F+ A G + + LG +Y G LG+ D +A+ + A D S
Sbjct: 151 PSNYVKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAAD---MS 207
Query: 194 SCRNYGNFKE 203
S R Y E
Sbjct: 208 SSRAYEGLAE 217
>gb|AAL47058.1|AF326608_1 (AF326608) JHP318-like protein [Helicobacter pylori]
Length = 215
Score = 83.2 bits (204), Expect = 2e-15
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 3/166 (1%)
Query: 25 DSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGC 84
D D A + + AC + CNNLG ++ +G GV K+ KA +Y +CE + GC
Sbjct: 42 DKQDFSKARKYFERACGLNNGRGCNNLGVLYRDGQGVEKNLTKAAQFYSKACELKDGGGC 101
Query: 85 YNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAA 144
NLG++ + ++K AC D GC NLG +Y G++ N AA
Sbjct: 102 GNLGVLYQKGEV--VEKNLTKAAQFYSKACELKDGGGCGNLGVLYQKGEV-VEKNLTKAA 158
Query: 145 KYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
+ AC+ C L VLY G GV +D +A S AC G
Sbjct: 159 YLYSKACELKESFGCGALAVLYINGQGVEKDLTKADQYISKACKLG 204
Score = 60.5 bits (145), Expect = 1e-08
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
AC + GC NLG +Y +G G N AA+++ AC+ G C NLGVLYQKG V
Sbjct: 56 ACGLNNGRGCNNLGVLYRDGQ-GVEKNLTKAAQFYSKACELKDGGGCGNLGVLYQKGEVV 114
Query: 173 PQDDQRALDLFSYACDNGFESSCRNYG 199
++ +A +S AC+ C N G
Sbjct: 115 EKNLTKAAQFYSKACELKDGGGCGNLG 141
Score = 47.4 bits (111), Expect = 1e-04
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C D C NL +Y+ + + N A LY+ AC+ + C L ++ NG GV
Sbjct: 129 CELKDGGGCGNLGVLYQKGEVVEKN-LTKAAYLYSKACELKESFGCGALAVLYINGQGVE 187
Query: 63 KDYYKAISYYKFSCENGN 80
KD KA Y +C+ G+
Sbjct: 188 KDLTKADQYISKACKLGD 205
Score = 47.0 bits (110), Expect = 2e-04
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 143 AAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYG 199
A KYF+ AC CNNLGVLY+ G GV ++ +A +S AC+ C N G
Sbjct: 49 ARKYFERACGLNNGRGCNNLGVLYRDGQGVEKNLTKAAQFYSKACELKDGGGCGNLG 105
>gb|AAL47059.1|AF326610_1 (AF326610) JHP318-like protein [Helicobacter pylori]
Length = 213
Score = 82.8 bits (203), Expect = 3e-15
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 7/185 (3%)
Query: 11 CANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAIS 70
C L +Y++ + + A Y+ AC + + C LG ++ +G V K+ KA
Sbjct: 30 CGALGDLYDDVEK----NLIKAAYFYSKACDLKEGMGCKRLGSLYYHGRDVEKNLTKAAY 85
Query: 71 YYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYA 130
+Y +C+ N GC NLG++ G++K + AC D +GC +LG +Y
Sbjct: 86 FYSKACDLNNGGGCGNLGVLYQKGE--GVEKNLIKAAQFYSKACELKDGLGCKDLGTLYY 143
Query: 131 NGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
NG+ G + AA + AC+ C L VLY G GV ++ +A S AC G
Sbjct: 144 NGE-GVEKDLIKAAYLYSKACELKESFGCGALAVLYINGQGVEKNLIKADQYISKACKLG 202
Query: 191 FESSC 195
+ +C
Sbjct: 203 DQEAC 207
Score = 73.9 bits (180), Expect = 1e-12
Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 4/160 (2%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C L +Y + ++ + N A Y+ AC + C NLG ++ G GV
Sbjct: 55 CDLKEGMGCKRLGSLYYHGRDVEKN-LTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVE 113
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
K+ KA +Y +CE + +GC +LG + N G++K + L AC + GC
Sbjct: 114 KNLIKAAQFYSKACELKDGLGCKDLGTL--YYNGEGVEKDLIKAAYLYSKACELKESFGC 171
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 162
L +Y NG G N A +Y AC G +C L
Sbjct: 172 GALAVLYINGQ-GVEKNLIKADQYISKACKLGDQEACEAL 210
Score = 67.8 bits (164), Expect = 9e-11
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
+D+ KA Y++ +C+ GC LG + + ++K + AC+ + MGC
Sbjct: 9 QDFSKARKYFEKACDLKYGGGCGALGDLYD-----DVEKNLIKAAYFYSKACDLKEGMGC 63
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG +Y +G N AA ++ ACD G C NLGVLYQKG GV ++ +A
Sbjct: 64 KRLGSLYYHGR-DVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIKAAQF 122
Query: 183 FSYACDNGFESSCRNYG 199
+S AC+ C++ G
Sbjct: 123 YSKACELKDGLGCKDLG 139
>ref|NP_223762.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71856 hypothetical protein jhp1045 - Helicobacter pylori (strain J99)
gb|AAD06623.1| (AE001532) putative [Helicobacter pylori J99]
Length = 256
Score = 82.4 bits (202), Expect = 3e-15
Identities = 57/193 (29%), Positives = 89/193 (45%), Gaps = 5/193 (2%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G++ A L MYEN + D + A++ + A NNLG M+ G GVPKD
Sbjct: 60 GESLAYILLGIMYENGRGVPK-DYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGVPKDE 118
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANL 125
KA+ Y++ + E G NLG+M G+ + A + G++ L
Sbjct: 119 KKAVEYFRIATEKGYTNAYINLGIMYMEGR--GVPSNYAKATECFRKAMHKGNVEAYILL 176
Query: 126 GWIYANGD--LGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLF 183
G IY +G+ LG + A Y++MA D + L Y+ GLGV +D ++A +
Sbjct: 177 GDIYYSGNDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKKKAEEYM 236
Query: 184 SYACDNGFESSCR 196
ACD + +C+
Sbjct: 237 QKACDFDIDKNCK 249
Score = 81.3 bits (199), Expect = 8e-15
Identities = 60/190 (31%), Positives = 90/190 (46%), Gaps = 9/190 (4%)
Query: 17 MYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSC 76
+Y+ ++ ++ + E A Y A + G+ LA LG M+ NG GVPKDY KA+ Y++ +
Sbjct: 34 IYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQKAV 93
Query: 77 ENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGA 136
+N G NLG+M G+ K + V+ +A G NLG +Y G G
Sbjct: 94 DNDIPRGYNNLGVMYKEGK--GVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEG-RGV 150
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLGVLYQKG---LGVPQDDQRALDLFSYACDNGFES 193
P N A + F+ A G + + LG +Y G LG+ D +A+ + A D S
Sbjct: 151 PSNYAKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAVVYYKMAAD---VS 207
Query: 194 SCRNYGNFKE 203
S R Y E
Sbjct: 208 SSRAYEGLSE 217
Score = 63.2 bits (152), Expect = 2e-09
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
A G+ + LG +Y NG G P + A +YFQ A D I NNLGV+Y++G GV
Sbjct: 56 AIKNGESLAYILLGIMYENGR-GVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGV 114
Query: 173 PQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGR 214
P+D+++A++ F A + G+ ++ N G V NY +
Sbjct: 115 PKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAK 156
>gb|AAB47276.1| (U86608) 29 kDa protein [Helicobacter pylori]
Length = 256
Score = 80.9 bits (198), Expect = 1e-14
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 5/193 (2%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G+ A L MYEN + D + A + + A NNLG M+ G GVPKD
Sbjct: 60 GEPLAYVLLGIMYENGRGVPK-DYKKAAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDE 118
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANL 125
KA+ Y++ + E G NLG+M G+ + + A + G++ L
Sbjct: 119 KKAVEYFRIATEKGYANAYINLGIMYMEGR--GVPSNYVKATECFRKAMHKGNVEAYILL 176
Query: 126 GWIYANGD--LGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLF 183
G IY +G+ LG + A Y++MA D + L Y+ GLGV +D ++A +
Sbjct: 177 GDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYRYGLGVEKDKKKAEEYM 236
Query: 184 SYACDNGFESSCR 196
ACD + +C+
Sbjct: 237 QKACDFDIDKNCK 249
Score = 79.0 bits (193), Expect = 4e-14
Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 9/190 (4%)
Query: 17 MYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSC 76
+Y+ ++ ++ + E A Y A + G+ LA LG M+ NG GVPKDY KA Y++ +
Sbjct: 34 IYKGEEAYNNKEYERAASFYKSAIKNGEPLAYVLLGIMYENGRGVPKDYKKAAEYFQKAV 93
Query: 77 ENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGA 136
+N G NLG+M G+ K + V+ +A G NLG +Y G G
Sbjct: 94 DNDIPRGYNNLGVMYKEGR--GVPKDEKKAVEYFRIATEKGYANAYINLGIMYMEG-RGV 150
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLGVLYQKG---LGVPQDDQRALDLFSYACDNGFES 193
P N A + F+ A G + + LG +Y G LG+ D +A+ + A D S
Sbjct: 151 PSNYVKATECFRKAMHKGNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAAD---MS 207
Query: 194 SCRNYGNFKE 203
S R Y E
Sbjct: 208 SSRAYEGLAE 217
>ref|NP_273467.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||F81200 conserved hypothetical protein NMB0419 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40857.1| (AE002398) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 198
Score = 79.7 bits (195), Expect = 2e-14
Identities = 59/192 (30%), Positives = 84/192 (43%), Gaps = 40/192 (20%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G+A A NL MY + +D E A++ Y A + G A NLGWM+ANG GV +D
Sbjct: 39 GNAAAQYNLGAMYYKGRGVRRDDAE-AVRWYRQAAEQGLAQAQYNLGWMYANGRGVRQDD 97
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANL 125
+A+ +Y+ + G YNLG+
Sbjct: 98 TEAVRWYRQAAAQGVVQAQYNLGV------------------------------------ 121
Query: 126 GWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSY 185
IYA G G ++ A ++F+ A G+ + NNLGV+Y + GV QD A + F
Sbjct: 122 --IYAEGR-GVRQDDVEAVRWFRQAAAQGVAQAQNNLGVMYAERRGVRQDRALAQEWFGK 178
Query: 186 ACDNGFESSCRN 197
AC NG + C N
Sbjct: 179 ACQNGDQDGCDN 190
Score = 60.8 bits (146), Expect = 1e-08
Identities = 45/161 (27%), Positives = 67/161 (40%), Gaps = 39/161 (24%)
Query: 39 ACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYG 98
A G+ A NLG M+ G GV +D +A+ +Y+ + E G YNL
Sbjct: 35 AAAQGNAAAQYNLGAMYYKGRGVRRDDAEAVRWYRQAAEQGLAQAQYNL----------- 83
Query: 99 IDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGS 158
GW+YANG G ++ A ++++ A G++ +
Sbjct: 84 ---------------------------GWMYANGR-GVRQDDTEAVRWYRQAAAQGVVQA 115
Query: 159 CNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYG 199
NLGV+Y +G GV QDD A+ F A G + N G
Sbjct: 116 QYNLGVIYAEGRGVRQDDVEAVRWFRQAAAQGVAQAQNNLG 156
>gb|AAM66149.1|AF326628_1 (AF326628) JHP1437-like protein [Helicobacter pylori]
Length = 310
Score = 77.8 bits (190), Expect = 8e-14
Identities = 67/205 (32%), Positives = 88/205 (42%), Gaps = 15/205 (7%)
Query: 3 CSGGDATACANLAQMYENK--KNADSNDKENALQLYAVA--CQGGDMLACNNLGWMFANG 58
C DA CA L + Y K + E AL+ A A C+ D C +L + N
Sbjct: 56 CRLNDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDAEKCKDLAEFYFNA 115
Query: 59 SGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNA 116
+ D A+ YY SC+ N GC N + I G+ K + DL Y AC
Sbjct: 116 N----DLKNALEYYSKSCKLNNVEGCMLSATFYN-DMIKGLKK---DKKDLEYYSKACEL 167
Query: 117 GDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDD 176
GCA LG IY NG+ G N A KY+ AC+ C+ LG Y G V QD
Sbjct: 168 NYGDGCAILGDIYHNGE-GVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFLGESVTQDL 226
Query: 177 QRALDLFSYACDNGFESSCRNYGNF 201
++A +S AC+ +C G F
Sbjct: 227 KKAFGYYSKACELNEALTCTLVGEF 251
Score = 69.3 bits (168), Expect = 3e-11
Identities = 56/195 (28%), Positives = 88/195 (44%), Gaps = 12/195 (6%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANG--SG 60
C DA C +LA+ Y N +ND +NAL+ Y+ +C+ ++ C L F N G
Sbjct: 97 CKSNDAEKCKDLAEFYFN-----ANDLKNALEYYSKSCKLNNVEGCM-LSATFYNDMIKG 150
Query: 61 VPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM 120
+ KD K + YY +CE GC LG + +N G+ + AC +
Sbjct: 151 LKKDK-KDLEYYSKACELNYGDGCAILGDI--YHNGEGVTQNFKKAFKYYSKACELNNGE 207
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
GC+ LG Y G+ + A Y+ AC+ +C +G Y+ G GV +D ++A
Sbjct: 208 GCSKLGGDYFLGE-SVTQDLKKAFGYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAF 266
Query: 181 DLFSYACDNGFESSC 195
+ + AC+ C
Sbjct: 267 EYSAKACELNDAKGC 281
Score = 47.8 bits (112), Expect = 9e-05
Identities = 26/85 (30%), Positives = 40/85 (46%), Gaps = 1/85 (1%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C+ L Y ++ + D + A Y+ AC+ + L C +G + +G GV
Sbjct: 201 CELNNGEGCSKLGGDYFLGESV-TQDLKKAFGYYSKACELNEALTCTLVGEFYRDGEGVT 259
Query: 63 KDYYKAISYYKFSCENGNDMGCYNL 87
KD KA Y +CE + GCY L
Sbjct: 260 KDLKKAFEYSAKACELNDAKGCYAL 284
Score = 43.1 bits (100), Expect = 0.002
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 15/188 (7%)
Query: 40 CQGGDMLACNNLGWMFANGSGVP----KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNN 95
C GG M N +F SG+ KD+ +A Y++ +C + GC L +
Sbjct: 19 CLGGLMAESNPKELIF---SGITIYTDKDFTRAKEYFEKACRLNDADGCAILREAYSKVI 75
Query: 96 IYGIDKAQLSQV---DLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACD 152
+ G + + + AC + D C +L Y N + L N A +Y+ +C
Sbjct: 76 LKGSARESIEKALEHTATAKACKSNDAEKCKDLAEFYFNAN---DLKN--ALEYYSKSCK 130
Query: 153 GGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNPNY 212
+ C Y + + D++ L+ +S AC+ + C G+ + V N+
Sbjct: 131 LNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDIYHNGEGVTQNF 190
Query: 213 GRLFMPYN 220
+ F Y+
Sbjct: 191 KKAFKYYS 198
>gb|AAM66156.1|AF326634_1 (AF326634) JHP1437-like protein [Helicobacter pylori]
Length = 327
Score = 77.0 bits (188), Expect = 1e-13
Identities = 60/231 (25%), Positives = 95/231 (40%), Gaps = 48/231 (20%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQ----GGDMLA----------- 47
C DA C +LA+ Y N +ND +NAL+ Y+ +C+ G ML+
Sbjct: 99 CKSNDAEKCKDLAEFYFN-----ANDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGL 153
Query: 48 ---------------------CNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYN 86
C LG ++ NG GV +++ KA YY +CE N GC
Sbjct: 154 KKDKKDLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSK 213
Query: 87 LGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGCANLGWIYANGDLGAPLNNHYAA 144
LG + +G Q + Y AC + + C +G Y +G+ G + A
Sbjct: 214 LG----GDYFFGESVTQDLKKAFGYYSKACELNEALTCTLVGEFYRDGE-GVTKDLKKAF 268
Query: 145 KYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSC 195
+Y AC+ C L Y +G GV + +++ + F +C G + +C
Sbjct: 269 EYSAKACELNDAKGCYALAAFYNEGKGVARGEKQMTENFEKSCKLGLKEAC 319
Score = 75.1 bits (183), Expect = 5e-13
Identities = 65/205 (31%), Positives = 87/205 (41%), Gaps = 15/205 (7%)
Query: 3 CSGGDATACANLAQMYENK--KNADSNDKENALQLYAVA--CQGGDMLACNNLGWMFANG 58
C DA C L + Y K + E A++ A A C+ D C +L + N
Sbjct: 58 CELHDADGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDAEKCKDLAEFYFNA 117
Query: 59 SGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNA 116
+ D A+ YY SC+ N GC N + I G+ K + DL Y AC
Sbjct: 118 N----DLKNALEYYSKSCKLNNVEGCMLSATFYN-DMIKGLKK---DKKDLEYYSKACEL 169
Query: 117 GDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDD 176
GCA LG IY NG+ G N A KY+ AC+ C+ LG Y G V QD
Sbjct: 170 NYGDGCAILGDIYHNGE-GVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFFGESVTQDL 228
Query: 177 QRALDLFSYACDNGFESSCRNYGNF 201
++A +S AC+ +C G F
Sbjct: 229 KKAFGYYSKACELNEALTCTLVGEF 253
Score = 44.3 bits (103), Expect = 0.001
Identities = 42/186 (22%), Positives = 77/186 (40%), Gaps = 11/186 (5%)
Query: 40 CQGGDMLACNNLGWMFANGS-GVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYG 98
C GG M N +F + KD+ +A Y++ +CE + GC L + + G
Sbjct: 21 CLGGLMAESNPKELIFLGITIYTDKDFTRAKEYFEKACELHDADGCIILRETYSKVILKG 80
Query: 99 IDKAQLSQVDLNYL----ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGG 154
K + + + ++ AC + D C +L Y N + L N A +Y+ +C
Sbjct: 81 SAKESIEKA-IEHIATAKACKSNDAEKCKDLAEFYFNAN---DLKN--ALEYYSKSCKLN 134
Query: 155 ILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGR 214
+ C Y + + D++ L+ +S AC+ + C G+ + V N+ +
Sbjct: 135 NVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKK 194
Query: 215 LFMPYN 220
F Y+
Sbjct: 195 AFKYYS 200
>gb|AAM66155.1|AF326633_1 (AF326633) JHP1437-like protein [Helicobacter pylori]
Length = 336
Score = 75.1 bits (183), Expect = 5e-13
Identities = 65/205 (31%), Positives = 87/205 (41%), Gaps = 15/205 (7%)
Query: 3 CSGGDATACANLAQMYENK--KNADSNDKENALQLYAVA--CQGGDMLACNNLGWMFANG 58
C DA C L + Y K + E A++ A A C+ D C +L + N
Sbjct: 58 CELHDADGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDAEKCKDLAEFYFNA 117
Query: 59 SGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNA 116
+ D A+ YY SC+ N GC N + I G+ K + DL Y AC
Sbjct: 118 N----DLKNALEYYSKSCKLNNVEGCMLSATFYN-DMIKGLKK---DKKDLEYYSKACEL 169
Query: 117 GDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDD 176
GCA LG IY NG+ G N A KY+ AC+ C+ LG Y G V QD
Sbjct: 170 NYGDGCAILGDIYHNGE-GVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFFGESVTQDL 228
Query: 177 QRALDLFSYACDNGFESSCRNYGNF 201
++A +S AC+ +C G F
Sbjct: 229 KKAFGYYSKACELNEALTCTLVGEF 253
Score = 70.5 bits (171), Expect = 1e-11
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 48/228 (21%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQ----GGDMLA----------- 47
C DA C +LA+ Y N +ND +NAL+ Y+ +C+ G ML+
Sbjct: 99 CKSNDAEKCKDLAEFYFN-----ANDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGL 153
Query: 48 ---------------------CNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYN 86
C LG ++ NG GV +++ KA YY +CE N GC
Sbjct: 154 KKDKKDLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSK 213
Query: 87 LGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGCANLGWIYANGDLGAPLNNHYAA 144
LG + +G Q + Y AC + + C +G Y +G+ G + A
Sbjct: 214 LG----GDYFFGESVTQDLKKAFGYYSKACELNEALTCTLVGEFYRDGE-GVTKDLKKAF 268
Query: 145 KYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFE 192
+Y AC+ C +L + +G GV + +++ + +C G +
Sbjct: 269 EYSAKACELNDAKGCYSLAAFFNEGKGVARGEKQMTENLEKSCKLGLK 316
Score = 44.3 bits (103), Expect = 0.001
Identities = 42/186 (22%), Positives = 77/186 (40%), Gaps = 11/186 (5%)
Query: 40 CQGGDMLACNNLGWMFANGS-GVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYG 98
C GG M N +F + KD+ +A Y++ +CE + GC L + + G
Sbjct: 21 CLGGLMAESNPKELIFLGITIYTDKDFTRAKEYFEKACELHDADGCIILRETYSKVILKG 80
Query: 99 IDKAQLSQVDLNYL----ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGG 154
K + + + ++ AC + D C +L Y N + L N A +Y+ +C
Sbjct: 81 SAKESIEKA-IEHIATAKACKSNDAEKCKDLAEFYFNAN---DLKN--ALEYYSKSCKLN 134
Query: 155 ILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGR 214
+ C Y + + D++ L+ +S AC+ + C G+ + V N+ +
Sbjct: 135 NVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKK 194
Query: 215 LFMPYN 220
F Y+
Sbjct: 195 AFKYYS 200
>ref|NP_281603.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||C81385 probable periplasmic protein Cj0413 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB74249.1| (AL139075) putative periplasmic protein [Campylobacter jejuni]
Length = 234
Score = 73.6 bits (179), Expect = 2e-12
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 14 LAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYK 73
L+++ E K ++N + A +++ C+ AC +L +M + GV KD +A +Y
Sbjct: 17 LSELEEGLKLYEANKFDKAYEIFKSLCEKDISKACFSLAFMHESARGVSKDLNQAYKFYD 76
Query: 74 FSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGD 133
+C+ G C N+ L+ + N G + L + AC G+ + C N+ Y
Sbjct: 77 KACKLGLANACSNMALL--LQN-QGYENEALLAFN---KACTLGESLSCNNIALFYEKEK 130
Query: 134 LGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFES 193
G A+ +++ +CD +C LG LY KG V + AL +S +C GF
Sbjct: 131 DG-----QMASSFYKRSCDLKNARACYQLGSLYDKGELVKASVKSALAFYSKSCTLGFGE 185
Query: 194 SCRNYGNFKE 203
+C G + +
Sbjct: 186 ACYLLGRYNQ 195
Score = 55.1 bits (131), Expect = 6e-07
Identities = 45/152 (29%), Positives = 66/152 (42%), Gaps = 19/152 (12%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C G A AC+N+A + +N+ + AL + AC G+ L+CNN+ +
Sbjct: 79 CKLGLANACSNMALLLQNQ-----GYENEALLAFNKACTLGESLSCNNIALFYEK----E 129
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
KD A S+YK SC+ N CY LG + + + + + S + +C G C
Sbjct: 130 KDGQMASSFYKRSCDLKNARACYQLGSLYDKGEL--VKASVKSALAFYSKSCTLGFGEAC 187
Query: 123 ANLGWI--YANGDLGAPLNNHYAAKYFQMACD 152
LG DL A +YF MACD
Sbjct: 188 YLLGRYNQLEKQDLTK------AKRYFGMACD 213
Score = 49.7 bits (117), Expect = 2e-05
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C+ G++ +C N+A YE +K D + A Y +C + AC LG ++ G V
Sbjct: 111 CTLGESLSCNNIALFYEKEK-----DGQMASSFYKRSCDLKNARACYQLGSLYDKGELVK 165
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNY-LACNAGDMMG 121
A+++Y SC G CY LG + ++K L++ + +AC+
Sbjct: 166 ASVKSALAFYSKSCTLGFGEACYLLGRYNQ------LEKQDLTKAKRYFGMACDQKHQEA 219
Query: 122 CA 123
CA
Sbjct: 220 CA 221
>gb|AAM66150.1|AF326629_1 (AF326629) JHP1437-like protein [Helicobacter pylori]
Length = 325
Score = 73.2 bits (178), Expect = 2e-12
Identities = 65/205 (31%), Positives = 89/205 (42%), Gaps = 15/205 (7%)
Query: 3 CSGGDATACANLAQMYEN---KKNA-DSNDKENALQLYAVACQGGDMLACNNLGWMFANG 58
C DA CA L + Y ++NA +S +K A AC+ D C +L + N
Sbjct: 57 CKSNDADGCAILREAYSKAIARENARESIEKALEHTATAKACKSNDAEKCRDLAEFYFNV 116
Query: 59 SGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNA 116
+ D A+ YY SC+ N GC N + I G+ K + DL Y AC
Sbjct: 117 N----DLKNALEYYSKSCKLNNVEGCMLSATFYN-DMIKGLKK---DKKDLEYYSKACEL 168
Query: 117 GDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDD 176
GCA LG IY NG+ G + A +Y+ AC+ + LG Y G GV QD
Sbjct: 169 NYGDGCAILGDIYHNGE-GVAKDLKKAFQYYSKACELNNGEGYSKLGGAYFFGEGVTQDL 227
Query: 177 QRALDLFSYACDNGFESSCRNYGNF 201
++A +S AC +C G F
Sbjct: 228 KKAFGYYSKACKLNEALTCTLVGEF 252
Score = 66.2 bits (160), Expect = 3e-10
Identities = 50/195 (25%), Positives = 80/195 (40%), Gaps = 8/195 (4%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C + C A Y + DK++ L+ Y+ AC+ C LG ++ NG GV
Sbjct: 130 CKLNNVEGCMLSATFYNDMIKGLKKDKKD-LEYYSKACELNYGDGCAILGDIYHNGEGVA 188
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMM 120
KD KA YY +CE N G LG +G Q + Y AC + +
Sbjct: 189 KDLKKAFQYYSKACELNNGEGYSKLG----GAYFFGEGVTQDLKKAFGYYSKACKLNEAL 244
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
C +G Y +G+ G + A +Y AC+ C L + + GV + +++
Sbjct: 245 TCTLVGEFYRDGE-GVAKDLKKAFEYSAKACELNDAKGCYALAAFFNEAKGVARGEKQTT 303
Query: 181 DLFSYACDNGFESSC 195
+ +C G + +C
Sbjct: 304 ENLEKSCKLGLKETC 318
>gb|AAD05210.1| (AF063095) SELlL [Mus musculus]
gb|AAH26816.1| (BC026816) Sel1 (suppressor of lin-12) 1 homolog (C. elegans) [Mus
musculus]
Length = 740
Score = 72.0 bits (175), Expect = 5e-12
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
GD A L Q++ + + + A + +A G+ A LG M++ GS VP+
Sbjct: 317 GDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQS 376
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGC 122
A+ Y+K + + GN +G LG+ +YG + L Y A G + G
Sbjct: 377 NETALHYFKKAADMGNPVGQSGLGMAY----LYGRGVQVNYDLALKYFQKAAEQGWVDGQ 432
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG +Y NG +G + A KYF +A GG + + NL ++ G GV + A++L
Sbjct: 433 LQLGSMYYNG-IGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVEL 491
Query: 183 FSYACDNG--FESSCRNYGNFKE 203
F C+ G E Y ++K+
Sbjct: 492 FKNVCERGRWSERLMTAYNSYKD 514
Score = 70.5 bits (171), Expect = 1e-11
Identities = 56/191 (29%), Positives = 88/191 (45%), Gaps = 9/191 (4%)
Query: 4 SGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGS-GVP 62
+GG L EN +E+ +Q Y + GD+ A LG + +G GV
Sbjct: 278 TGGSVVQRIRLPDEVENPGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVE 337
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLM-SNVNNIYGIDKAQLSQVDLNYL--ACNAGDM 119
+++ +A Y+ + GN LG M S ++I Q ++ L+Y A + G+
Sbjct: 338 QNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIV----PQSNETALHYFKKAADMGNP 393
Query: 120 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRA 179
+G + LG Y G G +N A KYFQ A + G + LG +Y G+GV +D ++A
Sbjct: 394 VGQSGLGMAYLYGR-GVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 452
Query: 180 LDLFSYACDNG 190
L F+ A G
Sbjct: 453 LKYFNLASQGG 463
Score = 58.2 bits (139), Expect = 7e-08
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Query: 69 ISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWI 128
I YY+F E G+ LG + +++ G+++ D LA NAG+ A LG +
Sbjct: 307 IQYYQFLAEKGDVQAQVGLGQL-HLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKM 365
Query: 129 YANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACD 188
Y+ G P +N A YF+ A D G + LG+ Y G GV + AL F A +
Sbjct: 366 YSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAE 425
Query: 189 NGFESSCRNYGNFKEHLLRVNPNYGRLFMPYN 220
G+ G+ + + V +Y + +N
Sbjct: 426 QGWVDGQLQLGSMYYNGIGVKRDYKQALKYFN 457
Score = 55.5 bits (132), Expect = 4e-07
Identities = 45/175 (25%), Positives = 78/175 (43%), Gaps = 11/175 (6%)
Query: 26 SNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCEN-GNDMG- 83
++ + AL Y GG+++A LG+ + G GV + A+++Y+ + +D+
Sbjct: 218 NSSQAKALVYYTFGALGGNLIAHMILGYRYWAGIGVLQSCESALTHYRLVANHVASDISL 277
Query: 84 -----CYNLGLMSNVNNIYGIDKAQLSQVDLNY--LACNAGDMMGCANLGWIYANGDLGA 136
+ L V N G++ L + + Y GD+ LG ++ +G G
Sbjct: 278 TGGSVVQRIRLPDEVEN-PGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGV 336
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLG-VPQDDQRALDLFSYACDNG 190
N+ A YF +A + G + LG +Y +G VPQ ++ AL F A D G
Sbjct: 337 EQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMG 391
>ref|XP_127076.1| (XM_127076) similar to Sel-1 homolog precursor (Suppressor of
lin-12-like protein) (Sel-1L) [Mus musculus]
sp|Q9Z2G6|SE1L_MOUSE Sel-1 homolog precursor (Suppressor of lin-12-like protein)
(Sel-1L)
dbj|BAB23750.1| (AK005023) Sel1 (suppressor of lin-12) 1 homolog (C. elegans)~data
source:MGD, source key:MGI:1329016,
evidence:ISS~putative [Mus musculus]
Length = 790
Score = 72.0 bits (175), Expect = 5e-12
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
GD A L Q++ + + + A + +A G+ A LG M++ GS VP+
Sbjct: 367 GDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQS 426
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGC 122
A+ Y+K + + GN +G LG+ +YG + L Y A G + G
Sbjct: 427 NETALHYFKKAADMGNPVGQSGLGMAY----LYGRGVQVNYDLALKYFQKAAEQGWVDGQ 482
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG +Y NG +G + A KYF +A GG + + NL ++ G GV + A++L
Sbjct: 483 LQLGSMYYNG-IGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVEL 541
Query: 183 FSYACDNG--FESSCRNYGNFKE 203
F C+ G E Y ++K+
Sbjct: 542 FKNVCERGRWSERLMTAYNSYKD 564
Score = 70.5 bits (171), Expect = 1e-11
Identities = 56/191 (29%), Positives = 88/191 (45%), Gaps = 9/191 (4%)
Query: 4 SGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGS-GVP 62
+GG L EN +E+ +Q Y + GD+ A LG + +G GV
Sbjct: 328 TGGSVVQRIRLPDEVENPGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVE 387
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLM-SNVNNIYGIDKAQLSQVDLNYL--ACNAGDM 119
+++ +A Y+ + GN LG M S ++I Q ++ L+Y A + G+
Sbjct: 388 QNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIV----PQSNETALHYFKKAADMGNP 443
Query: 120 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRA 179
+G + LG Y G G +N A KYFQ A + G + LG +Y G+GV +D ++A
Sbjct: 444 VGQSGLGMAYLYGR-GVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 502
Query: 180 LDLFSYACDNG 190
L F+ A G
Sbjct: 503 LKYFNLASQGG 513
Score = 58.2 bits (139), Expect = 7e-08
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Query: 69 ISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWI 128
I YY+F E G+ LG + +++ G+++ D LA NAG+ A LG +
Sbjct: 357 IQYYQFLAEKGDVQAQVGLGQL-HLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKM 415
Query: 129 YANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACD 188
Y+ G P +N A YF+ A D G + LG+ Y G GV + AL F A +
Sbjct: 416 YSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAE 475
Query: 189 NGFESSCRNYGNFKEHLLRVNPNYGRLFMPYN 220
G+ G+ + + V +Y + +N
Sbjct: 476 QGWVDGQLQLGSMYYNGIGVKRDYKQALKYFN 507
Score = 55.5 bits (132), Expect = 4e-07
Identities = 45/175 (25%), Positives = 78/175 (43%), Gaps = 11/175 (6%)
Query: 26 SNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCEN-GNDMG- 83
++ + AL Y GG+++A LG+ + G GV + A+++Y+ + +D+
Sbjct: 268 NSSQAKALVYYTFGALGGNLIAHMILGYRYWAGIGVLQSCESALTHYRLVANHVASDISL 327
Query: 84 -----CYNLGLMSNVNNIYGIDKAQLSQVDLNY--LACNAGDMMGCANLGWIYANGDLGA 136
+ L V N G++ L + + Y GD+ LG ++ +G G
Sbjct: 328 TGGSVVQRIRLPDEVEN-PGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGV 386
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLG-VPQDDQRALDLFSYACDNG 190
N+ A YF +A + G + LG +Y +G VPQ ++ AL F A D G
Sbjct: 387 EQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMG 441
>ref|NP_005056.3| (NM_005065) sel-1 suppressor of lin-12-like (C. elegans);
Suppressor of lin 12 (sel-1), C. elegans, homolog of;
sel-1 (suppressor of lin-12, C.elegans)-like [Homo
sapiens]
ref|XP_007325.4| (XM_007325) sel-1 suppressor of lin-12-like (C. elegans) [Homo
sapiens]
sp|Q9UBV2|SE1L_HUMAN Sel-1 homolog precursor (Suppressor of lin-12-like protein)
(Sel-1L)
dbj|BAA87904.1| (AB020335) Pancreas-specific gene [Homo sapiens]
dbj|BAA89204.1| (AB024763) TSA305 [Homo sapiens]
Length = 794
Score = 72.0 bits (175), Expect = 5e-12
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
GD A L Q++ + + + A + +A G+ A LG M++ GS VP+
Sbjct: 371 GDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQS 430
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGC 122
A+ Y+K + + GN +G LG+ +YG + L Y A G + G
Sbjct: 431 NETALHYFKKAADMGNPVGQSGLGMAY----LYGRGVQVNYDLALKYFQKAAEQGWVDGQ 486
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG +Y NG +G + A KYF +A GG + + NL ++ G GV + A++L
Sbjct: 487 LQLGSMYYNG-IGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVEL 545
Query: 183 FSYACDNG--FESSCRNYGNFKE 203
F C+ G E Y ++K+
Sbjct: 546 FKNVCERGRWSERLMTAYNSYKD 568
Score = 70.5 bits (171), Expect = 1e-11
Identities = 56/191 (29%), Positives = 88/191 (45%), Gaps = 9/191 (4%)
Query: 4 SGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGS-GVP 62
+GG L EN +E+ +Q Y + GD+ A LG + +G GV
Sbjct: 332 TGGSVVQRIRLPDEVENPGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVE 391
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLM-SNVNNIYGIDKAQLSQVDLNYL--ACNAGDM 119
+++ +A Y+ + GN LG M S ++I Q ++ L+Y A + G+
Sbjct: 392 QNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIV----PQSNETALHYFKKAADMGNP 447
Query: 120 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRA 179
+G + LG Y G G +N A KYFQ A + G + LG +Y G+GV +D ++A
Sbjct: 448 VGQSGLGMAYLYGR-GVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506
Query: 180 LDLFSYACDNG 190
L F+ A G
Sbjct: 507 LKYFNLASQGG 517
Score = 58.2 bits (139), Expect = 7e-08
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Query: 69 ISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWI 128
I YY+F E G+ LG + +++ G+++ D LA NAG+ A LG +
Sbjct: 361 IQYYQFLAEKGDVQAQVGLGQL-HLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKM 419
Query: 129 YANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACD 188
Y+ G P +N A YF+ A D G + LG+ Y G GV + AL F A +
Sbjct: 420 YSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAE 479
Query: 189 NGFESSCRNYGNFKEHLLRVNPNYGRLFMPYN 220
G+ G+ + + V +Y + +N
Sbjct: 480 QGWVDGQLQLGSMYYNGIGVKRDYKQALKYFN 511
Score = 55.5 bits (132), Expect = 4e-07
Identities = 45/175 (25%), Positives = 78/175 (43%), Gaps = 11/175 (6%)
Query: 26 SNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCEN-GNDMG- 83
++ + AL Y GG+++A LG+ + G GV + A+++Y+ + +D+
Sbjct: 272 NSSQAKALVYYTFGALGGNLIAHMVLGYRYWAGIGVLQSCESALTHYRLVANHVASDISL 331
Query: 84 -----CYNLGLMSNVNNIYGIDKAQLSQVDLNY--LACNAGDMMGCANLGWIYANGDLGA 136
+ L V N G++ L + + Y GD+ LG ++ +G G
Sbjct: 332 TGGSVVQRIRLPDEVEN-PGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGV 390
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLG-VPQDDQRALDLFSYACDNG 190
N+ A YF +A + G + LG +Y +G VPQ ++ AL F A D G
Sbjct: 391 EQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMG 445
>gb|AAF29413.1|AF052059_1 (AF052059) SEL1L [Homo sapiens]
gb|AAL40905.1| (AF198647) sel-1 [Homo sapiens]
Length = 794
Score = 72.0 bits (175), Expect = 5e-12
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
GD A L Q++ + + + A + +A G+ A LG M++ GS VP+
Sbjct: 371 GDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQS 430
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGC 122
A+ Y+K + + GN +G LG+ +YG + L Y A G + G
Sbjct: 431 NETALHYFKKAADMGNPVGQSGLGMAY----LYGRGVQVNYDLALKYFQKAAEQGWVDGQ 486
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG +Y NG +G + A KYF +A GG + + NL ++ G GV + A++L
Sbjct: 487 LQLGSMYYNG-IGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVEL 545
Query: 183 FSYACDNG--FESSCRNYGNFKE 203
F C+ G E Y ++K+
Sbjct: 546 FKNVCERGRWSERLMTAYNSYKD 568
Score = 70.5 bits (171), Expect = 1e-11
Identities = 56/191 (29%), Positives = 88/191 (45%), Gaps = 9/191 (4%)
Query: 4 SGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGS-GVP 62
+GG L EN +E+ +Q Y + GD+ A LG + +G GV
Sbjct: 332 TGGSVVQRIRLPDEVENPGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVE 391
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLM-SNVNNIYGIDKAQLSQVDLNYL--ACNAGDM 119
+++ +A Y+ + GN LG M S ++I Q ++ L+Y A + G+
Sbjct: 392 QNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIV----PQSNETALHYFKKAADMGNP 447
Query: 120 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRA 179
+G + LG Y G G +N A KYFQ A + G + LG +Y G+GV +D ++A
Sbjct: 448 VGQSGLGMAYLYGR-GVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506
Query: 180 LDLFSYACDNG 190
L F+ A G
Sbjct: 507 LKYFNLASQGG 517
Score = 58.2 bits (139), Expect = 7e-08
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Query: 69 ISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWI 128
I YY+F E G+ LG + +++ G+++ D LA NAG+ A LG +
Sbjct: 361 IQYYQFLAEKGDVQAQVGLGQL-HLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKM 419
Query: 129 YANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACD 188
Y+ G P +N A YF+ A D G + LG+ Y G GV + AL F A +
Sbjct: 420 YSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAE 479
Query: 189 NGFESSCRNYGNFKEHLLRVNPNYGRLFMPYN 220
G+ G+ + + V +Y + +N
Sbjct: 480 QGWVDGQLQLGSMYYNGIGVKRDYKQALKYFN 511
Score = 55.5 bits (132), Expect = 4e-07
Identities = 45/175 (25%), Positives = 78/175 (43%), Gaps = 11/175 (6%)
Query: 26 SNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCEN-GNDMG- 83
++ + AL Y GG+++A LG+ + G GV + A+++Y+ + +D+
Sbjct: 272 NSSQAKALVYYTFGALGGNLIAHMVLGYRYWAGIGVLQSCESALTHYRLVANHVASDISL 331
Query: 84 -----CYNLGLMSNVNNIYGIDKAQLSQVDLNY--LACNAGDMMGCANLGWIYANGDLGA 136
+ L V N G++ L + + Y GD+ LG ++ +G G
Sbjct: 332 TGGSVVQRIRLPDEVEN-PGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGV 390
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLG-VPQDDQRALDLFSYACDNG 190
N+ A YF +A + G + LG +Y +G VPQ ++ AL F A D G
Sbjct: 391 EQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMG 445
>dbj|BAB12403.1| (AB048195) SEL1L [Mesocricetus auratus]
Length = 794
Score = 71.6 bits (174), Expect = 6e-12
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
GD A L Q++ + + + A + +A G+ A LG M++ GS VP+
Sbjct: 371 GDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQS 430
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGC 122
A+ Y+K + + GN +G LG+ +YG + L Y A G + G
Sbjct: 431 NETALHYFKKAADMGNPVGQSGLGMAY----LYGRGIQVNYDLALKYFQKAAEQGWVDGQ 486
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG +Y NG +G + A KYF +A GG + + NL ++ G GV + A++L
Sbjct: 487 LQLGSMYYNG-IGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVEL 545
Query: 183 FSYACDNG--FESSCRNYGNFKE 203
F C+ G E Y ++K+
Sbjct: 546 FKNVCERGRWSERLMTAYNSYKD 568
Score = 70.1 bits (170), Expect = 2e-11
Identities = 56/191 (29%), Positives = 88/191 (45%), Gaps = 9/191 (4%)
Query: 4 SGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGS-GVP 62
+GG L EN +E+ +Q Y + GD+ A LG + +G GV
Sbjct: 332 TGGSVVQRIRLPDEVENPGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVE 391
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLM-SNVNNIYGIDKAQLSQVDLNYL--ACNAGDM 119
+++ +A Y+ + GN LG M S ++I Q ++ L+Y A + G+
Sbjct: 392 QNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIV----PQSNETALHYFKKAADMGNP 447
Query: 120 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRA 179
+G + LG Y G G +N A KYFQ A + G + LG +Y G+GV +D ++A
Sbjct: 448 VGQSGLGMAYLYGR-GIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQA 506
Query: 180 LDLFSYACDNG 190
L F+ A G
Sbjct: 507 LKYFNLASQGG 517
Score = 57.8 bits (138), Expect = 9e-08
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Query: 69 ISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWI 128
I YY+F E G+ LG + +++ G+++ D LA NAG+ A LG +
Sbjct: 361 IQYYQFLAEKGDVQAQVGLGQL-HLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKM 419
Query: 129 YANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACD 188
Y+ G P +N A YF+ A D G + LG+ Y G G+ + AL F A +
Sbjct: 420 YSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAE 479
Query: 189 NGFESSCRNYGNFKEHLLRVNPNYGRLFMPYN 220
G+ G+ + + V +Y + +N
Sbjct: 480 QGWVDGQLQLGSMYYNGIGVKRDYKQALKYFN 511
Score = 53.9 bits (128), Expect = 1e-06
Identities = 44/175 (25%), Positives = 77/175 (43%), Gaps = 11/175 (6%)
Query: 26 SNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCEN-GNDMG- 83
++ + AL Y GG+++A LG+ + G GV + +++Y+ + +D+
Sbjct: 272 NSSQAKALVYYTFGALGGNLIAHMVLGYRYWAGIGVLQSCESVLTHYRLVANHVASDISL 331
Query: 84 -----CYNLGLMSNVNNIYGIDKAQLSQVDLNY--LACNAGDMMGCANLGWIYANGDLGA 136
+ L V N G++ L + + Y GD+ LG ++ +G G
Sbjct: 332 TGGSVVQRIRLPDEVEN-PGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGV 390
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLG-VPQDDQRALDLFSYACDNG 190
N+ A YF +A + G + LG +Y +G VPQ ++ AL F A D G
Sbjct: 391 EQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMG 445
>ref|NP_415177.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||B64799 hypothetical protein b0644 - Escherichia coli
gb|AAB40845.1| (U82598) hypothetical protein [Escherichia coli]
gb|AAC73745.1| (AE000169) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35291.1| (D90704) Sel-1 protein [Escherichia coli]
Length = 327
Score = 68.6 bits (166), Expect = 5e-11
Identities = 48/163 (29%), Positives = 77/163 (46%), Gaps = 11/163 (6%)
Query: 30 ENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGL 89
+ A+ Y +A + G A NNLGWM+ NG+GV KDY A +YK + G+
Sbjct: 119 KEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHS------DA 172
Query: 90 MSNVNNIYGIDKAQLSQVDLN---YL-ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAK 145
+N+ ++Y K L YL + G+ + W Y G+ G + A
Sbjct: 173 QNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGE-GVDQDYKQAMY 231
Query: 146 YFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACD 188
++ A G +G+ N+G +Y+ G GV +D Q A + F+ A +
Sbjct: 232 WYLKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAE 274
Score = 50.4 bits (119), Expect = 1e-05
Identities = 46/185 (24%), Positives = 75/185 (39%), Gaps = 40/185 (21%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G + A NLA +YE+ K N K A Y + Q G+ A + W + G GV +DY
Sbjct: 168 GHSDAQNNLADLYEDGKGVAQN-KTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDY 226
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANL 125
+A+ +Y + G+ +G Y N+
Sbjct: 227 KQAMYWYLKAAAQGS-VGAY-------------------------------------VNI 248
Query: 126 GWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSY 185
G++Y +G G + A ++F A + + NL ++Y G G P D ++ALDL+
Sbjct: 249 GYMYKHGQ-GVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQALDLYRK 307
Query: 186 ACDNG 190
+G
Sbjct: 308 VQSSG 312
>pir||T46587 hypothetical protein [imported] - Vogesella indigofera
gb|AAD54009.1|AF088857_1 (AF088857) hypothetical protein [Vogesella indigofera]
Length = 268
Score = 68.6 bits (166), Expect = 5e-11
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 38 VACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIY 97
VA + GD A LG + GSGVP+D+ KA ++Y+ + G NL ++ N
Sbjct: 38 VAAEQGDANAQFRLGVRYEKGSGVPQDFAKAATWYRQAATQGMPEAQNNLAVL--YLNGQ 95
Query: 98 GIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILG 157
G+++ + A G NLG + NG G P N+ A + + A G L
Sbjct: 96 GVNQNDAEALAWFRKAATQGQAEAQLNLGAMLMNGQ-GTPKNDDEAVVWTRKAAAQGQLM 154
Query: 158 SCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYG 199
+ NL ++ ++G G+PQDD A+ LF + G + N G
Sbjct: 155 ADYNLAIMMREGRGLPQDDAAAVALFRKVAEQGVAIAQSNLG 196
Score = 67.8 bits (164), Expect = 9e-11
Identities = 55/174 (31%), Positives = 78/174 (44%), Gaps = 4/174 (2%)
Query: 13 NLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYY 72
NLA +Y N + + ND E AL + A G A NLG M NG G PK+ +A+ +
Sbjct: 86 NLAVLYLNGQGVNQNDAE-ALAWFRKAATQGQAEAQLNLGAMLMNGQGTPKNDDEAVVWT 144
Query: 73 KFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANG 132
+ + G M YNL +M G+ + + V L G + +NLG +Y G
Sbjct: 145 RKAAAQGQLMADYNLAIMMREGR--GLPQDDAAAVALFRKVAEQGVAIAQSNLGLMYKLG 202
Query: 133 DLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYA 186
G + A + + + NLGVLY +G GV QDD A+ F A
Sbjct: 203 -RGVAQDYQLALSWLRKGVAQKSAMAQANLGVLYLEGKGVAQDDNEAVVWFRLA 255
Score = 63.5 bits (153), Expect = 2e-09
Identities = 54/175 (30%), Positives = 79/175 (44%), Gaps = 4/175 (2%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
GDA A L YE K + D A Y A G A NNL ++ NG GV ++
Sbjct: 43 GDANAQFRLGVRYE-KGSGVPQDFAKAATWYRQAATQGMPEAQNNLAVLYLNGQGVNQND 101
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANL 125
+A+++++ + G NLG M + N G K V A G +M NL
Sbjct: 102 AEALAWFRKAATQGQAEAQLNLGAM--LMNGQGTPKNDDEAVVWTRKAAAQGQLMADYNL 159
Query: 126 GWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
+ G G P ++ A F+ + G+ + +NLG++Y+ G GV QD Q AL
Sbjct: 160 AIMMREG-RGLPQDDAAAVALFRKVAEQGVAIAQSNLGLMYKLGRGVAQDYQLAL 213
Score = 45.1 bits (105), Expect = 6e-04
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 102 AQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNN 161
AQ ++ +A GD LG Y G G P + AA +++ A G+ + NN
Sbjct: 28 AQSAEQIAEQVAAEQGDANAQFRLGVRYEKGS-GVPQDFAKAATWYRQAATQGMPEAQNN 86
Query: 162 LGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYG 199
L VLY G GV Q+D AL F A G + N G
Sbjct: 87 LAVLYLNGQGVNQNDAEALAWFRKAATQGQAEAQLNLG 124
>sp|P77234|YBEQ_ECOLI Hypothetical protein ybeQ
Length = 325
Score = 68.6 bits (166), Expect = 5e-11
Identities = 48/163 (29%), Positives = 77/163 (46%), Gaps = 11/163 (6%)
Query: 30 ENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGL 89
+ A+ Y +A + G A NNLGWM+ NG+GV KDY A +YK + G+
Sbjct: 117 KEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHS------DA 170
Query: 90 MSNVNNIYGIDKAQLSQVDLN---YL-ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAK 145
+N+ ++Y K L YL + G+ + W Y G+ G + A
Sbjct: 171 QNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGE-GVDQDYKQAMY 229
Query: 146 YFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACD 188
++ A G +G+ N+G +Y+ G GV +D Q A + F+ A +
Sbjct: 230 WYLKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAE 272
Score = 50.4 bits (119), Expect = 1e-05
Identities = 46/185 (24%), Positives = 75/185 (39%), Gaps = 40/185 (21%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G + A NLA +YE+ K N K A Y + Q G+ A + W + G GV +DY
Sbjct: 166 GHSDAQNNLADLYEDGKGVAQN-KTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDY 224
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANL 125
+A+ +Y + G+ +G Y N+
Sbjct: 225 KQAMYWYLKAAAQGS-VGAY-------------------------------------VNI 246
Query: 126 GWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSY 185
G++Y +G G + A ++F A + + NL ++Y G G P D ++ALDL+
Sbjct: 247 GYMYKHGQ-GVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQALDLYRK 305
Query: 186 ACDNG 190
+G
Sbjct: 306 VQSSG 310
>ref|NP_435252.1| (NC_003037) hypothetical protein [Sinorhizobium meliloti]
gb|AAK64664.1| (AE007195) hypothetical protein [Sinorhizobium meliloti]
Length = 244
Score = 66.6 bits (161), Expect = 2e-10
Identities = 48/176 (27%), Positives = 81/176 (45%), Gaps = 6/176 (3%)
Query: 17 MYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSC 76
M E A + D +AL+++ + G A NN+G FA G GVP++ A + + +
Sbjct: 1 MAEALARAQAGDYGSALRIWEPLARAGVARAQNNIGACFAEGLGVPENRELACKWLRLAA 60
Query: 77 ENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDL-- 134
E G+ +G N + ++ + G D + A GD L W+ G++
Sbjct: 61 EAGDPVGQRNYAAL-HMQGLAGTDADYGIAAEYYRRAAEKGDAPAQDMLSWLLLEGEIMT 119
Query: 135 GAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
PL A ++ + A + GI S LG+L+ LGV +D Q+A+ + A + G
Sbjct: 120 ADPLE---ARRWAECAAEAGIASSMTRLGMLHHNALGVERDAQKAVYWWLKAAERG 172
>ref|NP_459646.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL19605.1| (AE008726) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 331
Score = 66.2 bits (160), Expect = 3e-10
Identities = 49/180 (27%), Positives = 83/180 (45%), Gaps = 5/180 (2%)
Query: 22 KNADSNDKENALQLY--AVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENG 79
K+ ++ K+N L L+ A Q G A N LGW+ +G+ DY +A+++Y+ E
Sbjct: 75 KDTPTDMKDNTLALFWSEKAAQQGHRHAFNTLGWVQEGETGMAPDYAQAVAWYRKGAEQS 134
Query: 80 NDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLN 139
+++ YNLG M + G+++ + A G L ++Y NG G N
Sbjct: 135 HNLAQYNLGRMYHSGT--GVEQNDTQALYWFKQAALQGHCASQERLAYMYGNGK-GCRKN 191
Query: 140 NHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYG 199
AA +++ + S +G Y G G+ QD Q+A+ F A D G + + + G
Sbjct: 192 LSLAALWYKKSALQESSYSQYQMGYCYYIGKGIKQDYQQAIYWFRKAADQGDDDAYNSIG 251
Score = 62.4 bits (150), Expect = 4e-09
Identities = 49/178 (27%), Positives = 75/178 (41%), Gaps = 4/178 (2%)
Query: 13 NLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYY 72
NL +MY + + ND + AL + A G + L +M+ NG G K+ A +Y
Sbjct: 141 NLGRMYHSGTGVEQNDTQ-ALYWFKQAALQGHCASQERLAYMYGNGKGCRKNLSLAALWY 199
Query: 73 KFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANG 132
K S + Y +G + GI + + A + GD ++GW+Y G
Sbjct: 200 KKSALQESSYSQYQMGYCYYIGK--GIKQDYQQAIYWFRKAADQGDDDAYNSIGWMYKCG 257
Query: 133 DLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
G N A ++F + + NLG +Y+ G G QD Q+AL F A G
Sbjct: 258 H-GVEQNYSLALEWFHKSAECNNSSGWYNLGCMYRDGHGTAQDLQQALYWFKKAQPTG 314
>gb|EAA06387.1| (AAAB01008846) agCP13101 [Anopheles gambiae str. PEST]
Length = 849
Score = 65.5 bits (158), Expect = 4e-10
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 8/188 (4%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGS-GVPKD 64
GD A L Q++ D + ALQ ++ A G+ +A LG ++ GS + D
Sbjct: 375 GDVQAQVGLGQLHYQGGRGIPLDHQRALQYFSQAANAGNAVAMAFLGKIYLEGSDNIKAD 434
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLA--CNAGDMMGC 122
A Y+K + + GN +G LG+M ++G + + L Y A + G + G
Sbjct: 435 NETAFKYFKKAADLGNPVGQSGLGIMY----LHGKGVRKDTGKALKYFAKAADQGWVDGQ 490
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG +Y +G +G + A KYF +A G + + NLG ++ GLG+ + A++L
Sbjct: 491 LQLGNMYYSG-IGVQRDFKLAIKYFSLASQSGHVLAFYNLGQMHAIGLGMIRSCPTAVEL 549
Query: 183 FSYACDNG 190
F + G
Sbjct: 550 FKNVAERG 557
Score = 65.5 bits (158), Expect = 4e-10
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 9/200 (4%)
Query: 4 SGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWM-FANGSGVP 62
SGG A L +N + + + Y + GD+ A LG + + G G+P
Sbjct: 336 SGGAAVHRIRLLDEVDNSGPSSGILDNDLIDYYQLLADKGDVQAQVGLGQLHYQGGRGIP 395
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQL-SQVDLNYL--ACNAGDM 119
D+ +A+ Y+ + GN + LG + + G D + ++ Y A + G+
Sbjct: 396 LDHQRALQYFSQAANAGNAVAMAFLGKIY----LEGSDNIKADNETAFKYFKKAADLGNP 451
Query: 120 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRA 179
+G + LG +Y +G G + A KYF A D G + LG +Y G+GV +D + A
Sbjct: 452 VGQSGLGIMYLHGK-GVRKDTGKALKYFAKAADQGWVDGQLQLGNMYYSGIGVQRDFKLA 510
Query: 180 LDLFSYACDNGFESSCRNYG 199
+ FS A +G + N G
Sbjct: 511 IKYFSLASQSGHVLAFYNLG 530
Score = 58.2 bits (139), Expect = 7e-08
Identities = 59/214 (27%), Positives = 81/214 (37%), Gaps = 45/214 (21%)
Query: 32 ALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCEN-------GNDMGC 84
AL Y +A G + A LG+ + G GVP A+ YY+
Sbjct: 282 ALLYYTLAAAGENSWAQMALGYRYWAGVGVPNSCETALDYYRKVATKVASQVTFSGGAAV 341
Query: 85 YNLGLMSNVNNIYG---------IDKAQL--------SQVDLNYL--------------- 112
+ + L+ V+N ID QL +QV L L
Sbjct: 342 HRIRLLDEVDNSGPSSGILDNDLIDYYQLLADKGDVQAQVGLGQLHYQGGRGIPLDHQRA 401
Query: 113 ------ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLY 166
A NAG+ + A LG IY G +N A KYF+ A D G + LG++Y
Sbjct: 402 LQYFSQAANAGNAVAMAFLGKIYLEGSDNIKADNETAFKYFKKAADLGNPVGQSGLGIMY 461
Query: 167 QKGLGVPQDDQRALDLFSYACDNGFESSCRNYGN 200
G GV +D +AL F+ A D G+ GN
Sbjct: 462 LHGKGVRKDTGKALKYFAKAADQGWVDGQLQLGN 495
>ref|NP_586349.1| (NC_003237) similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
emb|CAD25953.1| (AL590450) similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
Length = 590
Score = 65.5 bits (158), Expect = 4e-10
Identities = 56/194 (28%), Positives = 86/194 (43%), Gaps = 16/194 (8%)
Query: 7 DATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYY 66
D+TA N+ YE + + N A ++Y ++ + + A N LG + G GV +D
Sbjct: 204 DSTALYNIGFCYEEGRGVERN-LIKAFEMYRLSAKMENSYAQNALGNCYEEGKGVDRDLQ 262
Query: 67 KAISYYKFSCENGNDMG------CYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM 120
KA YK S G G CY G+ + N ++KA + A G
Sbjct: 263 KAFELYKKSALQGYPSGQCNLAFCYQKGIGTERN----LEKA----FEWYKRAAIQGLSR 314
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
N+G+ Y NG LG A +++ + S + LGV YQ G GVP+D++ A+
Sbjct: 315 AKHNIGYCYQNG-LGTSPCMRSAVNWYKESAAEDNKYSIHALGVCYQHGYGVPKDERLAV 373
Query: 181 DLFSYACDNGFESS 194
FS GF+ +
Sbjct: 374 RYFSEGVRAGFDEA 387
Score = 56.6 bits (135), Expect = 2e-07
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
++E A++L+ A + D A N+G+ + G GV ++ KA Y+ S + N L
Sbjct: 188 NEEIAVELFKYASEKKDSTALYNIGFCYEEGRGVERNLIKAFEMYRLSAKMENSYAQNAL 247
Query: 88 GLMSNVNNIY----GIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYA 143
G N Y G+D+ +L + G G NL + Y G +G N A
Sbjct: 248 G------NCYEEGKGVDRDLQKAFELYKKSALQGYPSGQCNLAFCYQKG-IGTERNLEKA 300
Query: 144 AKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLF--SYACDNGF 191
++++ A G+ + +N+G YQ GLG + A++ + S A DN +
Sbjct: 301 FEWYKRAAIQGLSRAKHNIGYCYQNGLGTSPCMRSAVNWYKESAAEDNKY 350
Score = 54.3 bits (129), Expect = 1e-06
Identities = 46/183 (25%), Positives = 77/183 (41%), Gaps = 5/183 (2%)
Query: 30 ENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGL 89
E + L A + + A N LG+ + G G PK+ KA+ +Y+ S + N +NL
Sbjct: 406 EKSFALMKRAAEMNNSSAQNTLGYYYEEGYGTPKNLRKAVKWYETSAKRNNSWALFNLST 465
Query: 90 MSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQM 149
+ N DK + L + + G+ LG+ + G + + A +++
Sbjct: 466 LYLNGNHVPADKE--LGIRLLIRSRDLGNPRAMNTLGYCFEKG-IVVGKDPRLAFEHYTQ 522
Query: 150 ACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVN 209
A G + +LG Y+ G+G D +AL F A G E+S + L V
Sbjct: 523 ALMNGYSKAGYSLGRCYESGIGTEVDLDKALYYFYKASSAGEEASLQRLKKILSSL--VE 580
Query: 210 PNY 212
PN+
Sbjct: 581 PNH 583
Score = 52.8 bits (125), Expect = 3e-06
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 5/180 (2%)
Query: 32 ALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMS 91
A++ Y+ G+ + LG+ F G GV ++ A+ +K++ E + YN+G
Sbjct: 156 AVKYYSEGAYEGNTCSIGILGYCFLKGFGVERNEEIAVELFKYASEKKDSTALYNIGFCY 215
Query: 92 NVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAK-YFQMA 150
G+++ + ++ L+ + LG Y G G + A + Y + A
Sbjct: 216 EEGR--GVERNLIKAFEMYRLSAKMENSYAQNALGNCYEEGK-GVDRDLQKAFELYKKSA 272
Query: 151 CDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNP 210
G G C NL YQKG+G ++ ++A + + A G + N G ++ L +P
Sbjct: 273 LQGYPSGQC-NLAFCYQKGIGTERNLEKAFEWYKRAAIQGLSRAKHNIGYCYQNGLGTSP 331
Score = 52.0 bits (123), Expect = 5e-06
Identities = 45/190 (23%), Positives = 73/190 (37%), Gaps = 4/190 (2%)
Query: 14 LAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYK 73
L YE K D D + A +LY + G NL + + G G ++ KA +YK
Sbjct: 247 LGNCYEEGKGVD-RDLQKAFELYKKSALQGYPSGQCNLAFCYQKGIGTERNLEKAFEWYK 305
Query: 74 FSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGD 133
+ G +N+G N G S V+ + + LG Y +G
Sbjct: 306 RAAIQGLSRAKHNIGYC--YQNGLGTSPCMRSAVNWYKESAAEDNKYSIHALGVCYQHG- 362
Query: 134 LGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFES 193
G P + A +YF G + +L + Y+ G+GV +++ L A + S
Sbjct: 363 YGVPKDERLAVRYFSEGVRAGFDEAIISLALCYRSGIGVRISPEKSFALMKRAAEMNNSS 422
Query: 194 SCRNYGNFKE 203
+ G + E
Sbjct: 423 AQNTLGYYYE 432
Score = 51.6 bits (122), Expect = 6e-06
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 43 GDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKA 102
G++ A LG + G GVP D A+ YY GN LG +G+++
Sbjct: 131 GNLYARYCLGVCYQEGYGVPVDPLLAVKYYSEGAYEGNTCSIGILGYCFLKG--FGVERN 188
Query: 103 QLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 162
+ V+L A D N+G+ Y G G N A + ++++ + N L
Sbjct: 189 EEIAVELFKYASEKKDSTALYNIGFCYEEG-RGVERNLIKAFEMYRLSAKMENSYAQNAL 247
Query: 163 GVLYQKGLGVPQDDQRALDLFSYACDNGFES 193
G Y++G GV +D Q+A +L+ + G+ S
Sbjct: 248 GNCYEEGKGVDRDLQKAFELYKKSALQGYPS 278
>gb|AAL47060.1|AF326611_1 (AF326611) JHP318-like protein [Helicobacter pylori]
Length = 131
Score = 65.1 bits (157), Expect = 6e-10
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 22 KNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGND 81
K+ + D A + + AC C +LG ++ N GV K+ K +Y +C+ N
Sbjct: 4 KSNKAKDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDLNNG 63
Query: 82 MGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNH 141
+GC NLG + G++K + AC+ + GC LG++Y +G G N
Sbjct: 64 VGCKNLGFLYEYGE--GVEKDLIKATQYASKACDLNNGSGCDVLGFLYGSGK-GVEKNLT 120
Query: 142 YAAKYFQMACD 152
AA ++ ACD
Sbjct: 121 KAAYFYSKACD 131
Score = 64.3 bits (155), Expect = 1e-09
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 59 SGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL-ACNAG 117
S KD+ +A Y++ +C GC +LG + N G++K L++V Y AC+
Sbjct: 5 SNKAKDFTQAKKYFEKACNLNYGRGCGSLGDL--YENDQGVEK-NLTKVAYFYSKACDLN 61
Query: 118 DMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQ 177
+ +GC NLG++Y G+ G + A +Y ACD C+ LG LY G GV ++
Sbjct: 62 NGVGCKNLGFLYEYGE-GVEKDLIKATQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLT 120
Query: 178 RALDLFSYACD 188
+A +S ACD
Sbjct: 121 KAAYFYSKACD 131
Score = 57.8 bits (138), Expect = 9e-08
Identities = 29/88 (32%), Positives = 44/88 (49%), Gaps = 1/88 (1%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C+ C +L +YEN + + N + A Y+ AC + + C NLG+++ G GV
Sbjct: 22 CNLNYGRGCGSLGDLYENDQGVEKNLTKVAY-FYSKACDLNNGVGCKNLGFLYEYGEGVE 80
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLM 90
KD KA Y +C+ N GC LG +
Sbjct: 81 KDLIKATQYASKACDLNNGSGCDVLGFL 108
Score = 53.9 bits (128), Expect = 1e-06
Identities = 33/83 (39%), Positives = 40/83 (47%), Gaps = 1/83 (1%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
ACN GC +LG +Y N D G N A ++ ACD C NLG LY+ G GV
Sbjct: 21 ACNLNYGRGCGSLGDLYEN-DQGVEKNLTKVAYFYSKACDLNNGVGCKNLGFLYEYGEGV 79
Query: 173 PQDDQRALDLFSYACDNGFESSC 195
+D +A S ACD S C
Sbjct: 80 EKDLIKATQYASKACDLNNGSGC 102
>gb|AAF01236.1|AF185288_1 (AF185288) immunoreactive protein [Coxiella burnetii]
Length = 469
Score = 64.7 bits (156), Expect = 7e-10
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 6/164 (3%)
Query: 29 KENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLG 88
++ A+ +Y D A LG+M +G PKDY+KA +Y+ S E GN + Y LG
Sbjct: 213 EKKAVAIYQELANKQDPAAELKLGFMNEHGLLFPKDYHKAEEWYQKSAEQGNPIAQYLLG 272
Query: 89 LMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQ 148
M + G+D+ +D + + LG+IY P A K++
Sbjct: 273 NMYYLGR--GVDRDVNKAIDWLKKSAAQNYVPAKVGLGFIYEMSKHNYP----EAKKWYT 326
Query: 149 MACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFE 192
+A + NLG++Y+ G GV D Q+A L+ A NG +
Sbjct: 327 LASKFHNPQALYNLGLMYEYGKGVKSDPQKAFRLYKDAAQNGLD 370
Score = 49.3 bits (116), Expect = 3e-05
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 10 ACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAI 69
A NL MYE K S D + A +LY A Q G LA + M+ G+G+ D A+
Sbjct: 336 ALYNLGLMYEYGKGVKS-DPQKAFRLYKDAAQNGLDLAAVQVAGMYLKGTGIGFDPNTAL 394
Query: 70 SYYKFSCENGNDMGCYNLGLMSNVNNIYGID--KAQL 104
Y + + N Y LGLMS ID KA+L
Sbjct: 395 KMYSQAAQKNNSFATYQLGLMSESGVAQKIDLNKARL 431
Score = 44.7 bits (104), Expect = 8e-04
Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 10/192 (5%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D A + Y + + G+ +A LG M+ G GV +D KAI + K S L
Sbjct: 248 DYHKAEEWYQKSAEQGNPIAQYLLGNMYYLGRGVDRDVNKAIDWLKKSAAQNYVPAKVGL 307
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNY-LACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKY 146
G IY + K + Y LA + NLG +Y G G + A +
Sbjct: 308 GF------IYEMSKHNYPEAKKWYTLASKFHNPQALYNLGLMYEYGK-GVKSDPQKAFRL 360
Query: 147 FQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEH-- 204
++ A G+ + + +Y KG G+ D AL ++S A + G E
Sbjct: 361 YKDAAQNGLDLAAVQVAGMYLKGTGIGFDPNTALKMYSQAAQKNNSFATYQLGLMSESGV 420
Query: 205 LLRVNPNYGRLF 216
+++ N RL+
Sbjct: 421 AQKIDLNKARLY 432
>ref|NP_651179.1| (NM_142922) BcDNA:LD23587 gene product [Drosophila melanogaster]
gb|AAD55437.1|AF181652_1 (AF181652) BcDNA.LD23587 [Drosophila melanogaster]
gb|AAF56178.1| (AE003744) BcDNA:LD23587 gene product [Drosophila melanogaster]
Length = 819
Score = 64.7 bits (156), Expect = 7e-10
Identities = 51/190 (26%), Positives = 83/190 (42%), Gaps = 4/190 (2%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
GD + L Q+Y D + AL+ + +A G + LG ++ GS + D
Sbjct: 331 GDIQSQVGLGQVYYQGGKVTEQDHQKALEYFKMAADAGSAVGIAFLGKLYLEGSDQIRAD 390
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCAN 124
A Y+ + E G+ +G LGLM G+ K + + A + G + G
Sbjct: 391 NDAAFGYFSKAAEMGDPVGQSGLGLMYLKG--LGVPKDSIKALSYFTQAADQGWVDGQLQ 448
Query: 125 LGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFS 184
LG +Y G+ G + A KYF +A G + + NLGV+ G+G+ + A++ F
Sbjct: 449 LGNMYFTGN-GVKTDYKLAFKYFNLATQSGHVLAYYNLGVMNAYGMGMLRSCPAAVEFFK 507
Query: 185 YACDNGFESS 194
+ G SS
Sbjct: 508 TVSERGRWSS 517
Score = 62.8 bits (151), Expect = 3e-09
Identities = 52/188 (27%), Positives = 89/188 (46%), Gaps = 10/188 (5%)
Query: 16 QMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPK-DYYKAISYYKF 74
++ ++ +N S++ E + Y + GD+ + LG ++ G V + D+ KA+ Y+K
Sbjct: 305 RLLDDLENPGSSETE-IVDYYKLLADKGDIQSQVGLGQVYYQGGKVTEQDHQKALEYFKM 363
Query: 75 SCENGNDMGCYNLGLMSNVNNIYGIDKAQL-SQVDLNYL--ACNAGDMMGCANLGWIYAN 131
+ + G+ +G LG + + G D+ + + Y A GD +G + LG +Y
Sbjct: 364 AADAGSAVGIAFLGKLY----LEGSDQIRADNDAAFGYFSKAAEMGDPVGQSGLGLMYLK 419
Query: 132 GDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGF 191
G LG P ++ A YF A D G + LG +Y G GV D + A F+ A +G
Sbjct: 420 G-LGVPKDSIKALSYFTQAADQGWVDGQLQLGNMYFTGNGVKTDYKLAFKYFNLATQSGH 478
Query: 192 ESSCRNYG 199
+ N G
Sbjct: 479 VLAYYNLG 486
Score = 61.6 bits (148), Expect = 6e-09
Identities = 49/154 (31%), Positives = 67/154 (42%), Gaps = 5/154 (3%)
Query: 69 ISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNY--LACNAGDMMGCANLG 126
+ YYK + G+ LG V G Q Q L Y +A +AG +G A LG
Sbjct: 321 VDYYKLLADKGDIQSQVGLG---QVYYQGGKVTEQDHQKALEYFKMAADAGSAVGIAFLG 377
Query: 127 WIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYA 186
+Y G +N A YF A + G + LG++Y KGLGVP+D +AL F+ A
Sbjct: 378 KLYLEGSDQIRADNDAAFGYFSKAAEMGDPVGQSGLGLMYLKGLGVPKDSIKALSYFTQA 437
Query: 187 CDNGFESSCRNYGNFKEHLLRVNPNYGRLFMPYN 220
D G+ GN V +Y F +N
Sbjct: 438 ADQGWVDGQLQLGNMYFTGNGVKTDYKLAFKYFN 471
>ref|NP_207134.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64561 invalid gene - Helicobacter pylori (strain 26695)
gb|AAD07408.1| (AE000551) H. pylori predicted coding region HP0336 [Helicobacter
pylori 26695]
Length = 138
Score = 63.5 bits (153), Expect = 2e-09
Identities = 51/146 (34%), Positives = 66/146 (44%), Gaps = 13/146 (8%)
Query: 58 GSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACN 115
G V KD KAI YY +CE GC L L+SN I+K +L Q YL AC
Sbjct: 4 GGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ----INKQKLFQ----YLSKACE 53
Query: 116 AGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQD 175
GC LG Y NG + AA+Y+ AC C LG G GV ++
Sbjct: 54 LNSGNGCRFLGDFYENGKY-VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKN 112
Query: 176 DQRALDLFSYACDNGFESSCRNYGNF 201
+++A+ F AC G E +C N+
Sbjct: 113 EKQAVKTFEKACRLGSEDACGILNNY 138
Score = 43.9 bits (102), Expect = 0.001
Identities = 39/135 (28%), Positives = 53/135 (38%), Gaps = 9/135 (6%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D + A+Q Y AC+ +M C +L + S + K K Y +CE + GC L
Sbjct: 10 DLKKAIQYYVKACELNEMFGCLSL----VSNSQINKQ--KLFQYLSKACELNSGNGCRFL 63
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYF 147
G D + +Q AC D GC LG+ G G N A K F
Sbjct: 64 GDFYENGKYVKKDLRKAAQYYSK--ACGLNDQDGCLILGYKQYAGK-GVVKNEKQAVKTF 120
Query: 148 QMACDGGILGSCNNL 162
+ AC G +C L
Sbjct: 121 EKACRLGSEDACGIL 135
>emb|CAB65792.2| (AL109657) dJ842G6.2 (novel protein imilar to SEL1L (sel-1
(suppressor of lin-12, C.elegans)-like)) [Homo sapiens]
Length = 505
Score = 63.5 bits (153), Expect = 2e-09
Identities = 50/179 (27%), Positives = 83/179 (45%), Gaps = 6/179 (3%)
Query: 16 QMYENKKNADSNDKE---NALQLYAVACQGGDMLACNNLGWMFANG-SGVPKDYYKAISY 71
++ E +N SN + + Q Y + GD+ +LG + G G+ +DYYKA+ Y
Sbjct: 82 RLTERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYYKALHY 141
Query: 72 YKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYAN 131
+ + + G+ +G M N + + + +A + G+ +G LG +Y +
Sbjct: 142 FLKAAKAGSANAMAFIGKMYLEGNA-AVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFH 200
Query: 132 GDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
G G PLN A KYFQ A + G + LG +Y G G+ +D + A F A +G
Sbjct: 201 GK-GVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAFKYFYLASQSG 258
Score = 62.0 bits (149), Expect = 5e-09
Identities = 54/210 (25%), Positives = 80/210 (37%), Gaps = 47/210 (22%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKD------YYKAIS----------- 70
D+ AL Y GG+M++ LG+ + +G V ++ YYK ++
Sbjct: 15 DQAKALIYYTFGSAGGNMMSQMILGYRYLSGINVLQNCEVALSYYKKVADYIADTFEKSE 74
Query: 71 -----------------------------YYKFSCENGNDMGCYNLGLMSNVNNIYGIDK 101
YYKF E G+ +LG + + G+D+
Sbjct: 75 GVPVEKVRLTERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGR-KGLDQ 133
Query: 102 AQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNN 161
+ A AG A +G +Y G+ P NN A KYF MA G +
Sbjct: 134 DYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLHG 193
Query: 162 LGVLYQKGLGVPQDDQRALDLFSYACDNGF 191
LG+LY G GVP + AL F A + G+
Sbjct: 194 LGLLYFHGKGVPLNYAEALKYFQKAAEKGW 223
Score = 55.1 bits (131), Expect = 6e-07
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G A A A + +MY A + A + +++A G+ + + LG ++ +G GVP +Y
Sbjct: 149 GSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNY 208
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANL 125
+A+ Y++ + E G + LG M + GI K YLA +G + L
Sbjct: 209 AEALKYFQKAAEKGWPDAQFQLGFMYYSGS--GIWKDYKLAFKYFYLASQSGQPLAIYYL 266
Query: 126 GWIYANGDLGAPLNNHYAAKYFQMACDGG 154
+YA G G + A + ++ C+ G
Sbjct: 267 AKMYATG-TGVVRSCRTAVELYKGVCELG 294
Score = 53.5 bits (127), Expect = 2e-06
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 8/188 (4%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
GD +L Q++ + D AL + A + G A +G M+ G+ VP++
Sbjct: 112 GDVQIQVSLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQN 171
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGC 122
A Y+ + GN +G + LGL+ ++ A+ L Y A G
Sbjct: 172 NATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEA----LKYFQKAAEKGWPDAQ 227
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
LG++Y +G G + A KYF +A G + L +Y G GV + + A++L
Sbjct: 228 FQLGFMYYSGS-GIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVEL 286
Query: 183 FSYACDNG 190
+ C+ G
Sbjct: 287 YKGVCELG 294
>ref|XP_046437.2| (XM_046437) similar to dJ842G6.2 (novel protein imilar to SEL1L
(sel-1 (suppressor of lin-12, C.elegans)-like)) [Homo
sapiens]
Length = 387
Score = 63.5 bits (153), Expect = 2e-09
Identities = 50/179 (27%), Positives = 83/179 (45%), Gaps = 6/179 (3%)
Query: 16 QMYENKKNADSNDKE---NALQLYAVACQGGDMLACNNLGWMFANG-SGVPKDYYKAISY 71
++ E +N SN + + Q Y + GD+ +LG + G G+ +DYYKA+ Y
Sbjct: 153 RLTERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYYKALHY 212
Query: 72 YKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYAN 131
+ + + G+ +G M N + + + +A + G+ +G LG +Y +
Sbjct: 213 FLKAAKAGSANAMAFIGKMYLEGNA-AVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFH 271
Query: 132 GDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
G G PLN A KYFQ A + G + LG +Y G G+ +D + A F A +G
Sbjct: 272 GK-GVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAFKYFYLASQSG 329
Score = 62.0 bits (149), Expect = 5e-09
Identities = 54/210 (25%), Positives = 80/210 (37%), Gaps = 47/210 (22%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKD------YYKAIS----------- 70
D+ AL Y GG+M++ LG+ + +G V ++ YYK ++
Sbjct: 86 DQAKALIYYTFGSAGGNMMSQMILGYRYLSGINVLQNCEVALSYYKKVADYIADTFEKSE 145
Query: 71 -----------------------------YYKFSCENGNDMGCYNLGLMSNVNNIYGIDK 101
YYKF E G+ +LG + + G+D+
Sbjct: 146 GVPVEKVRLTERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGR-KGLDQ 204
Query: 102 AQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNN 161
+ A AG A +G +Y G+ P NN A KYF MA G +
Sbjct: 205 DYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLHG 264
Query: 162 LGVLYQKGLGVPQDDQRALDLFSYACDNGF 191
LG+LY G GVP + AL F A + G+
Sbjct: 265 LGLLYFHGKGVPLNYAEALKYFQKAAEKGW 294
Score = 53.9 bits (128), Expect = 1e-06
Identities = 35/127 (27%), Positives = 59/127 (45%), Gaps = 2/127 (1%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G A A A + +MY A + A + +++A G+ + + LG ++ +G GVP +Y
Sbjct: 220 GSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNY 279
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANL 125
+A+ Y++ + E G + LG M + GI K YLA +G + L
Sbjct: 280 AEALKYFQKAAEKGWPDAQFQLGFMYYSGS--GIWKDYKLAFKYFYLASQSGQPLAIYYL 337
Query: 126 GWIYANG 132
+YA G
Sbjct: 338 AKMYATG 344
Score = 49.3 bits (116), Expect = 3e-05
Identities = 56/227 (24%), Positives = 85/227 (36%), Gaps = 47/227 (20%)
Query: 32 ALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLG--L 89
A+QLY + G A N LG++ + G G+ D KA+ YY F GN M LG
Sbjct: 54 AIQLYESLAKEGSCKAQNALGFLSSYGIGMEYDQAKALIYYTFGSAGGNMMSQMILGYRY 113
Query: 90 MSNVNNIYG--------------------------IDKAQLSQVDLNYLACNA------- 116
+S +N + ++K +L++ N L+ N+
Sbjct: 114 LSGINVLQNCEVALSYYKKVADYIADTFEKSEGVPVEKVRLTERPEN-LSSNSEILDWDI 172
Query: 117 ----------GDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLY 166
GD+ +LG ++ G G + + A YF A G + +G +Y
Sbjct: 173 YQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMY 232
Query: 167 QKG-LGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNPNY 212
+G VPQ++ A FS A G G H V NY
Sbjct: 233 LEGNAAVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNY 279
Score = 46.6 bits (109), Expect = 2e-04
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 8/179 (4%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
GD +L Q++ + D AL + A + G A +G M+ G+ VP++
Sbjct: 183 GDVQIQVSLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQN 242
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGC 122
A Y+ + GN +G + LGL+ ++ A+ L Y A G
Sbjct: 243 NATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEA----LKYFQKAAEKGWPDAQ 298
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALD 181
LG++Y +G G + A KYF +A G + L +Y G GV + + A++
Sbjct: 299 FQLGFMYYSGS-GIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVE 356
>ref|XP_131544.1| (XM_131544) RIKEN cDNA 2010305A19 [Mus musculus]
gb|AAH12391.1|AAH12391 (BC012391) Similar to hypothetical protein FLJ12439 [Mus musculus]
Length = 231
Score = 63.2 bits (152), Expect = 2e-09
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 10/179 (5%)
Query: 7 DATACANLAQMYEN-KKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
D C L E +KN D K L+ GD +C LG + G G + +D
Sbjct: 33 DPEGCYRLVDYLEGIQKNFDEAAK--VLKFNCEKYGHGD--SCYKLGAYYVTGKGGLTQD 88
Query: 65 YYKAISYYKFSCENGNDMG---CYNLGLMSNVNNIYGIDKAQLSQV-DLNYLACNAGDMM 120
A S + +CE C+N+GL+++ + + L + D AC+ G
Sbjct: 89 LKAASSCFLMACEKPGKKSVESCHNVGLLAHDGQVNEDGQPDLGKARDYYSRACDGGYAA 148
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRA 179
C NL ++ G G P + A KY ACD G + +C N +Y+ G GV +D+ +A
Sbjct: 149 SCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACANASRMYKLGDGVDKDEAKA 207
Score = 46.2 bits (108), Expect = 3e-04
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 83 GCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNA-GDMMGCANLGWIYANGDLGAPLNNH 141
GCY L V+ + GI K + C G C LG Y G G +
Sbjct: 36 GCYRL-----VDYLEGIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQDLK 90
Query: 142 YAAKYFQMACDGG---ILGSCNNLGVLYQKGLGVPQDDQ----RALDLFSYACDNGFESS 194
A+ F MAC+ + SC+N+G+L G V +D Q +A D +S ACD G+ +S
Sbjct: 91 AASSCFLMACEKPGKKSVESCHNVGLLAHDGQ-VNEDGQPDLGKARDYYSRACDGGYAAS 149
Query: 195 CRN 197
C N
Sbjct: 150 CFN 152
Score = 41.2 bits (95), Expect = 0.009
Identities = 24/66 (36%), Positives = 30/66 (45%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C GG A +C NL+ M+ D A + AC G + AC N M+ G GV
Sbjct: 142 CDGGYAASCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACANASRMYKLGDGVD 201
Query: 63 KDYYKA 68
KD KA
Sbjct: 202 KDEAKA 207
>gb|AAH15313.1|AAH15313 (BC015313) hypothetical protein FLJ12439 [Homo sapiens]
Length = 231
Score = 62.8 bits (151), Expect = 3e-09
Identities = 50/179 (27%), Positives = 77/179 (42%), Gaps = 10/179 (5%)
Query: 7 DATACANLAQMYEN-KKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
D C L E +KN D K L+ Q D +C LG + G G + +D
Sbjct: 33 DPDGCYRLVDYLEGIRKNFDEAAK--VLKFNCEENQHSD--SCYKLGAYYVTGKGGLTQD 88
Query: 65 YYKAISYYKFSCENGNDMG---CYNLGLMSNVNNIYGIDKAQLSQV-DLNYLACNAGDMM 120
A + +CE C+N+GL+++ + + L + D AC+ G
Sbjct: 89 LKAAARCFLMACEKPGKKSIAACHNVGLLAHDGQVNEDGQPDLGKARDYYTRACDGGYTS 148
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRA 179
C NL ++ G G P + A KY ACD G + +C N +Y+ G GV +D+ +A
Sbjct: 149 SCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKA 207
Score = 55.5 bits (132), Expect = 4e-07
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 60 GVPKDYYKAISYYKFSCE-NGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAG- 117
G+ K++ +A KF+CE N + CY LG V G+ + + +AC
Sbjct: 46 GIRKNFDEAAKVLKFNCEENQHSDSCYKLGAYY-VTGKGGLTQDLKAAARCFLMACEKPG 104
Query: 118 --DMMGCANLGWIYANGDL---GAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGL-G 171
+ C N+G + +G + G P + A Y+ ACDGG SC NL ++ +G G
Sbjct: 105 KKSIAACHNVGLLAHDGQVNEDGQP-DLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPG 163
Query: 172 VPQDDQRALDLFSYACDNGFESSCRN 197
P+D A ACD G +C N
Sbjct: 164 FPKDMDLACKYSMKACDLGHIWACAN 189
Score = 46.6 bits (109), Expect = 2e-04
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 83 GCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM-GCANLGWIYANGDLGAPLNNH 141
GCY L V+ + GI K + C C LG Y G G +
Sbjct: 36 GCYRL-----VDYLEGIRKNFDEAAKVLKFNCEENQHSDSCYKLGAYYVTGKGGLTQDLK 90
Query: 142 YAAKYFQMACDGG---ILGSCNNLGVLYQKGLGVPQDDQ----RALDLFSYACDNGFESS 194
AA+ F MAC+ + +C+N+G+L G V +D Q +A D ++ ACD G+ SS
Sbjct: 91 AAARCFLMACEKPGKKSIAACHNVGLLAHDGQ-VNEDGQPDLGKARDYYTRACDGGYTSS 149
Query: 195 CRN 197
C N
Sbjct: 150 CFN 152
Score = 41.6 bits (96), Expect = 0.007
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C GG ++C NL+ M+ D + A + AC G + AC N M+ G GV
Sbjct: 142 CDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACANASRMYKLGDGVD 201
Query: 63 KDYYKA 68
KD KA
Sbjct: 202 KDEAKA 207
>ref|NP_075565.1| (NM_023077) hypothetical protein FLJ12439 [Homo sapiens]
dbj|BAB14063.1| (AK022501) unnamed protein product [Homo sapiens]
Length = 231
Score = 62.4 bits (150), Expect = 4e-09
Identities = 50/179 (27%), Positives = 77/179 (42%), Gaps = 10/179 (5%)
Query: 7 DATACANLAQMYEN-KKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
D C L E +KN D K L+ Q D +C LG + G G + +D
Sbjct: 33 DPDGCYRLVDYLEGIRKNFDEAAK--VLKFNCEENQHSD--SCYKLGAHYVTGKGGLTQD 88
Query: 65 YYKAISYYKFSCENGNDMG---CYNLGLMSNVNNIYGIDKAQLSQV-DLNYLACNAGDMM 120
A + +CE C+N+GL+++ + + L + D AC+ G
Sbjct: 89 LKAAARCFLMACEKPGKKSIAACHNVGLLAHDGQVNEDGQPDLGKARDYYTRACDGGYTS 148
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRA 179
C NL ++ G G P + A KY ACD G + +C N +Y+ G GV +D+ +A
Sbjct: 149 SCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACANASRMYKLGDGVDKDEAKA 207
Score = 55.5 bits (132), Expect = 4e-07
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 60 GVPKDYYKAISYYKFSCE-NGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAG- 117
G+ K++ +A KF+CE N + CY LG V G+ + + +AC
Sbjct: 46 GIRKNFDEAAKVLKFNCEENQHSDSCYKLGA-HYVTGKGGLTQDLKAAARCFLMACEKPG 104
Query: 118 --DMMGCANLGWIYANGDL---GAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGL-G 171
+ C N+G + +G + G P + A Y+ ACDGG SC NL ++ +G G
Sbjct: 105 KKSIAACHNVGLLAHDGQVNEDGQP-DLGKARDYYTRACDGGYTSSCFNLSAMFLQGAPG 163
Query: 172 VPQDDQRALDLFSYACDNGFESSCRN 197
P+D A ACD G +C N
Sbjct: 164 FPKDMDLACKYSMKACDLGHIWACAN 189
Score = 45.8 bits (107), Expect = 4e-04
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 83 GCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM-GCANLGWIYANGDLGAPLNNH 141
GCY L V+ + GI K + C C LG Y G G +
Sbjct: 36 GCYRL-----VDYLEGIRKNFDEAAKVLKFNCEENQHSDSCYKLGAHYVTGKGGLTQDLK 90
Query: 142 YAAKYFQMACDGG---ILGSCNNLGVLYQKGLGVPQDDQ----RALDLFSYACDNGFESS 194
AA+ F MAC+ + +C+N+G+L G V +D Q +A D ++ ACD G+ SS
Sbjct: 91 AAARCFLMACEKPGKKSIAACHNVGLLAHDGQ-VNEDGQPDLGKARDYYTRACDGGYTSS 149
Query: 195 CRN 197
C N
Sbjct: 150 CFN 152
Score = 41.6 bits (96), Expect = 0.007
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C GG ++C NL+ M+ D + A + AC G + AC N M+ G GV
Sbjct: 142 CDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACANASRMYKLGDGVD 201
Query: 63 KDYYKA 68
KD KA
Sbjct: 202 KDEAKA 207
>gb|AAD41587.1|AF057704_3 (AF057704) enhanced entry protein EnhC [Legionella pneumophila]
Length = 1201
Score = 62.0 bits (149), Expect = 5e-09
Identities = 49/154 (31%), Positives = 73/154 (46%), Gaps = 7/154 (4%)
Query: 32 ALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMS 91
AL+ Y A GDML NL M+ G GVP +Y KA+S +K + E G L M
Sbjct: 919 ALKAYENAAAKGDMLGAYNLALMYEYGKGVPVNYSKALSLFKEASEKGAPEAMSQLAGM- 977
Query: 92 NVNNIYGIDKAQLSQVDLNYL--ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQM 149
YG+ + + Q L + A + G+ LG + G +G L+ A +Y+Q
Sbjct: 978 ---YFYGLGQPRNEQQALVWYKKAASLGNGNALYALGLLSETG-VGVKLDFPDALRYYQD 1033
Query: 150 ACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLF 183
A D G + L +Y GLGV +D +R+ ++
Sbjct: 1034 ASDKGNEKAMLALARMYHYGLGVEKDHKRSASIY 1067
Score = 57.0 bits (136), Expect = 2e-07
Identities = 58/215 (26%), Positives = 85/215 (38%), Gaps = 32/215 (14%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G++ A LA Y ++ + + A ++Y GD A L +M G G D
Sbjct: 790 GNSHAGIVLADYYLSQSSVPEQMNQ-AKEIYKGLADKGDQYAQLKLAYMLQKGLGAAPDL 848
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNI----YGIDK-------AQLSQVDL----- 109
A +Y S E GN Y LG + Y + K LS+ D+
Sbjct: 849 AGAQHWYTASAEQGNPEAQYLLGQFYQLGETGEPDYNLAKHWYQKAAKHLSKADVALGFI 908
Query: 110 ------NYL--------ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGI 155
NY A GDM+G NL +Y G G P+N A F+ A + G
Sbjct: 909 YETVDDNYAQALKAYENAAAKGDMLGAYNLALMYEYGK-GVPVNYSKALSLFKEASEKGA 967
Query: 156 LGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
+ + L +Y GLG P+++Q+AL + A G
Sbjct: 968 PEAMSQLAGMYFYGLGQPRNEQQALVWYKKAASLG 1002
Score = 47.4 bits (111), Expect = 1e-04
Identities = 41/154 (26%), Positives = 64/154 (40%), Gaps = 3/154 (1%)
Query: 61 VPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM 120
V +Y +A+ Y+ + G+ +G YNL LM G+ + L A G
Sbjct: 912 VDDNYAQALKAYENAAAKGDMLGAYNLALMYEYGK--GVPVNYSKALSLFKEASEKGAPE 969
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
+ L +Y G LG P N A +++ A G + LG+L + G+GV D AL
Sbjct: 970 AMSQLAGMYFYG-LGQPRNEQQALVWYKKAASLGNGNALYALGLLSETGVGVKLDFPDAL 1028
Query: 181 DLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGR 214
+ A D G E + + L V ++ R
Sbjct: 1029 RYYQDASDKGNEKAMLALARMYHYGLGVEKDHKR 1062
>dbj|BAB25716.1| (AK008518) data source:SPTR, source key:Q9H9Z9,
evidence:ISS~homolog to CDNA FLJ12439 FIS, CLONE
NT2RM1000127~putative [Mus musculus]
Length = 204
Score = 62.0 bits (149), Expect = 5e-09
Identities = 40/138 (28%), Positives = 65/138 (46%), Gaps = 5/138 (3%)
Query: 47 ACNNLGWMFANGSG-VPKDYYKAISYYKFSCENGNDMG---CYNLGLMSNVNNIYGIDKA 102
+C LG + G G + +D A S + +CE C+N+GL+++ + +
Sbjct: 43 SCYKLGAYYVTGKGGLTQDLKAASSCFLMACEKPGKKSVESCHNVGLLAHDGQVNEDGQP 102
Query: 103 QLSQV-DLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNN 161
L + D AC+ G C NL ++ G G P + A KY ACD G + +C N
Sbjct: 103 DLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACAN 162
Query: 162 LGVLYQKGLGVPQDDQRA 179
+Y+ G GV +D+ +A
Sbjct: 163 ASRMYKLGDGVDKDEAKA 180
Score = 55.8 bits (133), Expect = 3e-07
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 60 GVPKDYYKAISYYKFSCEN-GNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLAC---N 115
G+ K++ +A KF+CE G+ CY LG V G+ + + +AC
Sbjct: 19 GIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAY-YVTGKGGLTQDLKAASSCFLMACEKPG 77
Query: 116 AGDMMGCANLGWIYANGDL---GAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGL-G 171
+ C N+G + +G + G P + A Y+ ACDGG SC NL ++ +G G
Sbjct: 78 KKSVESCHNVGLLAHDGQVNEDGQP-DLGKARDYYSRACDGGYAASCFNLSAMFLQGAPG 136
Query: 172 VPQDDQRALDLFSYACDNGFESSCRN 197
P+D A ACD G +C N
Sbjct: 137 FPKDMGLACKYSMKACDLGHVWACAN 162
Score = 46.2 bits (108), Expect = 3e-04
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 83 GCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNA-GDMMGCANLGWIYANGDLGAPLNNH 141
GCY L V+ + GI K + C G C LG Y G G +
Sbjct: 9 GCYRL-----VDYLEGIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQDLK 63
Query: 142 YAAKYFQMACDGG---ILGSCNNLGVLYQKGLGVPQDDQ----RALDLFSYACDNGFESS 194
A+ F MAC+ + SC+N+G+L G V +D Q +A D +S ACD G+ +S
Sbjct: 64 AASSCFLMACEKPGKKSVESCHNVGLLAHDGQ-VNEDGQPDLGKARDYYSRACDGGYAAS 122
Query: 195 CRN 197
C N
Sbjct: 123 CFN 125
Score = 45.8 bits (107), Expect = 4e-04
Identities = 31/95 (32%), Positives = 46/95 (47%), Gaps = 5/95 (5%)
Query: 10 ACANLAQM-YENKKNADSN-DKENALQLYAVACQGGDMLACNNLGWMFANGS-GVPKDYY 66
+C N+ + ++ + N D D A Y+ AC GG +C NL MF G+ G PKD
Sbjct: 83 SCHNVGLLAHDGQVNEDGQPDLGKARDYYSRACDGGYAASCFNLSAMFLQGAPGFPKDMG 142
Query: 67 KAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDK 101
A Y +C+ G+ C N M + + G+DK
Sbjct: 143 LACKYSMKACDLGHVWACANASRMYKLGD--GVDK 175
Score = 41.2 bits (95), Expect = 0.009
Identities = 24/66 (36%), Positives = 30/66 (45%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVP 62
C GG A +C NL+ M+ D A + AC G + AC N M+ G GV
Sbjct: 115 CDGGYAASCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACANASRMYKLGDGVD 174
Query: 63 KDYYKA 68
KD KA
Sbjct: 175 KDEAKA 180
>ref|NP_661851.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72193.1| (AE012860) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 248
Score = 61.6 bits (148), Expect = 6e-09
Identities = 50/201 (24%), Positives = 90/201 (43%), Gaps = 17/201 (8%)
Query: 21 KKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGN 80
+++AD+ DK+ A + Y +A + + G V +DY +A+ + + S GN
Sbjct: 37 RRDADT-DKDAAQKEYLIAMK-------------YYYGRDVDRDYAEALKWLRLSAAKGN 82
Query: 81 DMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNN 140
D Y +G M G+ + + LA + +G++Y +G G +
Sbjct: 83 DAAEYAIGFMYQKG--LGVPQDYAEAMKWYRLAAAKDNDNAQNQIGYLYHHG-WGVETDY 139
Query: 141 HYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGN 200
A K+++++ G + +N+GVLY+ G GV QD A+ + + G + N GN
Sbjct: 140 AEAMKWYRISAAKGNFAAEDNIGVLYEHGQGVEQDYAEAMRWYRISAAKGNGEAELNIGN 199
Query: 201 FKEHLLRVNPNYGRLFMPYNS 221
F +H L V + + Y S
Sbjct: 200 FYQHGLGVELDLNKAVKWYRS 220
Score = 60.1 bits (144), Expect = 2e-08
Identities = 44/189 (23%), Positives = 88/189 (46%), Gaps = 4/189 (2%)
Query: 14 LAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYK 73
+A Y ++ D D AL+ ++ G+ A +G+M+ G GVP+DY +A+ +Y+
Sbjct: 53 IAMKYYYGRDVD-RDYAEALKWLRLSAAKGNDAAEYAIGFMYQKGLGVPQDYAEAMKWYR 111
Query: 74 FSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGD 133
+ ND +G + ++ +G++ + ++ G+ N+G +Y +G
Sbjct: 112 LAAAKDNDNAQNQIGYL--YHHGWGVETDYAEAMKWYRISAAKGNFAAEDNIGVLYEHGQ 169
Query: 134 LGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFES 193
G + A ++++++ G + N+G YQ GLGV D +A+ + A G E
Sbjct: 170 -GVEQDYAEAMRWYRISAAKGNGEAELNIGNFYQHGLGVELDLNKAVKWYRSAAAKGNEE 228
Query: 194 SCRNYGNFK 202
+ + K
Sbjct: 229 AAQKLSAMK 237
>ref|NP_246550.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03695.1| (AE006198) unknown [Pasteurella multocida]
Length = 172
Score = 60.8 bits (146), Expect = 1e-08
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D A +L+ + G+M A N+G M+ +G GV +D +A+ +Y+ S E + Y+L
Sbjct: 41 DHATAFKLWLSRAEQGEMSAQFNVGRMYDDGDGVEQDKQQALKWYQKSAEQNHPDAQYHL 100
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYF 147
GLM + + GI + + GD NLG +YANG+ G + A YF
Sbjct: 101 GLMYSEGD--GIAQDFKQAYKWYSQSAVQGDARALYNLGTLYANGE-GIERDWDRAKMYF 157
Query: 148 QMACDGGILGSCN 160
+ AC G+ C+
Sbjct: 158 KQACKAGLPEGCD 170
Score = 46.6 bits (109), Expect = 2e-04
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 13 NLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYY 72
+L MY ++ + + D + A + Y+ + GD A NLG ++ANG G+ +D+ +A Y+
Sbjct: 99 HLGLMY-SEGDGIAQDFKQAYKWYSQSAVQGDARALYNLGTLYANGEGIERDWDRAKMYF 157
Query: 73 KFSCENGNDMGC 84
K +C+ G GC
Sbjct: 158 KQACKAGLPEGC 169
>ref|NP_460716.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL20675.1| (AE008778) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 509
Score = 59.3 bits (142), Expect = 3e-08
Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 15/186 (8%)
Query: 15 AQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKF 74
A + E + ADS + + +L A QG D A +LG +A G V DY AI + +
Sbjct: 22 AAVCEERYPADSEECQYVQELEQKAEQG-DESAQFSLGSWYAEGRYVKPDYKLAIKWLEK 80
Query: 75 SCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDL 134
+ + G+D + LG N + + + + ++ A GD LG Y GD
Sbjct: 81 AGKQGSDFSYFILGYHYNYGENFPLSRQKA--LEWYRKAAELGDSSTQEILGDAYMYGD- 137
Query: 135 GAPLNNHYAAKYFQMAC----DGGIL---GSCNN----LGVLYQKGLGVPQDDQRALDLF 183
G P N A ++++ A D G++ GS ++ LGV+Y G GVPQD Q+ L
Sbjct: 138 GFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFKLGVMYAHGQGVPQDYQQTAILM 197
Query: 184 SYACDN 189
A +N
Sbjct: 198 RKAAEN 203
Score = 57.8 bits (138), Expect = 9e-08
Identities = 44/153 (28%), Positives = 72/153 (46%), Gaps = 4/153 (2%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D AL+ Y A G A + +G MF G GV +DY +A+++Y+ + G +L
Sbjct: 295 DHNLALEWYRRAAAQGLAEAQDAIGVMFMQGEGVSQDYQQALAWYRKAARQGLPAAQTHL 354
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYF 147
G+MS G+ ++ + A LG Y+ G G P N+ A K++
Sbjct: 355 GIMSAFGR--GVAQSDRQAIAWYRKAAKQDFAKAQYQLGVAYSTG-RGVPENSRNALKWY 411
Query: 148 QMACDGGILGSCNNLGVLYQKG-LGVPQDDQRA 179
A + G + + LG +Y G GVP+D+++A
Sbjct: 412 LKAAEQGFTPAQSALGEIYAHGRQGVPKDNKQA 444
Score = 45.8 bits (107), Expect = 4e-04
Identities = 36/125 (28%), Positives = 57/125 (44%), Gaps = 2/125 (1%)
Query: 26 SNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCY 85
S D + AL Y A + G A +LG M A G GV + +AI++Y+ + + Y
Sbjct: 329 SQDYQQALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRKAAKQDFAKAQY 388
Query: 86 NLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAK 145
LG+ + G+ + + + A G + LG IYA+G G P +N A
Sbjct: 389 QLGVAYSTGR--GVPENSRNALKWYLKAAEQGFTPAQSALGEIYAHGRQGVPKDNKQAYI 446
Query: 146 YFQMA 150
++ MA
Sbjct: 447 WYYMA 451
>ref|NP_541444.1| (NC_003318) TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Brucella
melitensis]
gb|AAL53708.1| (AE009683) TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Brucella
melitensis]
Length = 317
Score = 59.3 bits (142), Expect = 3e-08
Identities = 42/154 (27%), Positives = 74/154 (47%), Gaps = 7/154 (4%)
Query: 39 ACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSN--VNNI 96
A GD+ A +G + G GV ++ +A +Y+ + + G Y +G + +
Sbjct: 47 AAAKGDIRALFEIGNRYMEGRGVAENVKEAAKWYQLAADQGFAPAQYRIGSFNEKGLGMA 106
Query: 97 YGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGIL 156
++KA+ LA + G+ NL ++A G G P +N A ++F A + G+
Sbjct: 107 RNLEKAK----SWYQLAADQGNASAMHNLAVLFATGTNGTP-DNAAAVRWFTEAAELGVK 161
Query: 157 GSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
S NLG+L KGLG+P + + + F+ A + G
Sbjct: 162 DSQYNLGILAAKGLGMPVNLEESYKWFALAANAG 195
Score = 41.6 bits (96), Expect = 0.007
Identities = 26/85 (30%), Positives = 41/85 (47%), Gaps = 1/85 (1%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
A GD+ +G Y G G N AAK++Q+A D G + +G +KGLG+
Sbjct: 47 AAAKGDIRALFEIGNRYMEGR-GVAENVKEAAKWYQLAADQGFAPAQYRIGSFNEKGLGM 105
Query: 173 PQDDQRALDLFSYACDNGFESSCRN 197
++ ++A + A D G S+ N
Sbjct: 106 ARNLEKAKSWYQLAADQGNASAMHN 130
>ref|NP_286370.1| (NC_002655) ybeQ gene product [Escherichia coli O157:H7 EDL933]
ref|NP_308709.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54978.1|AE005243_7 (AE005243) ybeQ gene product [Escherichia coli O157:H7 EDL933]
dbj|BAB34105.1| (AP002552) hypothetical protein [Escherichia coli O157:H7]
Length = 195
Score = 58.5 bits (140), Expect = 5e-08
Identities = 42/146 (28%), Positives = 68/146 (45%), Gaps = 11/146 (7%)
Query: 47 ACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQ 106
A NNLGWM+ NG+G +DY A +YK + G+ +N+ ++Y K
Sbjct: 4 AQNNLGWMYRNGNGAAQDYTLAFFWYKQAALQGHS------DAQNNLADLYEDGKGVAQN 57
Query: 107 VDLN---YL-ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 162
L YL + G+ + W Y G+ G + A ++ A G +G+ N+
Sbjct: 58 ETLAAFWYLKSAQQGNRHAQFQIAWDYNAGE-GVDQDYKQAMYWYLKAAAQGSVGAYVNI 116
Query: 163 GVLYQKGLGVPQDDQRALDLFSYACD 188
G +Y+ G GV +D Q A + F+ A +
Sbjct: 117 GYMYKHGQGVEKDYQAAFEWFTKAAE 142
Score = 57.8 bits (138), Expect = 9e-08
Identities = 48/178 (26%), Positives = 77/178 (42%), Gaps = 4/178 (2%)
Query: 13 NLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYY 72
NL MY N A + D A Y A G A NNL ++ +G GV ++ A +Y
Sbjct: 7 NLGWMYRNGNGA-AQDYTLAFFWYKQAALQGHSDAQNNLADLYEDGKGVAQNETLAAFWY 65
Query: 73 KFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANG 132
S + GN + + N G+D+ + A G + N+G++Y +G
Sbjct: 66 LKSAQQGNRHAQFQIAWDYNAGE--GVDQDYKQAMYWYLKAAAQGSVGAYVNIGYMYKHG 123
Query: 133 DLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
G + A ++F A + + NL ++Y G G P D ++ALDL+ +G
Sbjct: 124 Q-GVEKDYQAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSG 180
Score = 43.5 bits (101), Expect = 0.002
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G+ A +A Y + D + K+ A+ Y A G + A N+G+M+ +G GV KDY
Sbjct: 72 GNRHAQFQIAWDYNAGEGVDQDYKQ-AMYWYLKAAAQGSVGAYVNIGYMYKHGQGVEKDY 130
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQ 103
A ++ + E + YNL +M + +D Q
Sbjct: 131 QAAFEWFTKAAECNDATAWYNLAIMYHYGEGRPVDLRQ 168
>gb|AAH11926.1|AAH11926 (BC011926) Similar to KIAA0141 gene product [Homo sapiens]
Length = 515
Score = 57.0 bits (136), Expect = 2e-07
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 3/182 (1%)
Query: 13 NLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYY 72
++A + +N S D A + A G A N G +G G P+D KA+ YY
Sbjct: 245 SIAFNFLGTENMKSGDHTAAFSYFQKAAARGYSKAQYNAGLCHEHGRGTPRDISKAVLYY 304
Query: 73 KFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANG 132
+ + G+ + Y + + + V L A ++G A LG ++
Sbjct: 305 QLAASQGHSLAQYRYARCLLRDPASSWNPERQRAVSLLKQAADSGLREAQAFLGVLFTKE 364
Query: 133 DLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFE 192
L+ A KY +A + G S +LG+ Y+KGLGV ++ AL + + G E
Sbjct: 365 PY---LDEQRAVKYLWLAANNGDSQSRYHLGICYEKGLGVQRNLGEALRCYQQSAALGNE 421
Query: 193 SS 194
++
Sbjct: 422 AA 423
>ref|NP_055588.1| (NM_014773) KIAA0141 gene product [Homo sapiens]
sp|Q14154|Y141_HUMAN Hypothetical protein KIAA0141
dbj|BAA09490.1| (D50931) The KIAA0141 gene product is novel. [Homo sapiens]
Length = 515
Score = 57.0 bits (136), Expect = 2e-07
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 3/182 (1%)
Query: 13 NLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYY 72
++A + +N S D A + A G A N G +G G P+D KA+ YY
Sbjct: 245 SIAFNFLGTENMKSGDHTAAFSYFQKAAARGYSKAQYNAGLCHEHGRGTPRDISKAVLYY 304
Query: 73 KFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANG 132
+ + G+ + Y + + + V L A ++G A LG ++
Sbjct: 305 QLAASQGHSLAQYRYARCLLRDPASSWNPERQRAVSLLKQAADSGLREAQAFLGVLFTKE 364
Query: 133 DLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFE 192
L+ A KY +A + G S +LG+ Y+KGLGV ++ AL + + G E
Sbjct: 365 PY---LDEQRAVKYLWLAANNGDSQSRYHLGICYEKGLGVQRNLGEALRCYQQSAALGNE 421
Query: 193 SS 194
++
Sbjct: 422 AA 423
>ref|NP_455743.1| (NC_003198) putative secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD08375.1| (AL627269) putative secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 509
Score = 56.6 bits (135), Expect = 2e-07
Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Query: 15 AQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKF 74
A + E + DS + + +L A QG D A +LG +A G V DY AI + +
Sbjct: 22 AAVCEERYPPDSEECQYVQELEQKAEQG-DEGAQFSLGSWYAEGRYVKPDYKLAIKWLEK 80
Query: 75 SCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDL 134
+ + G+D + LG N + + + + ++ A GD LG Y GD
Sbjct: 81 AGKQGSDFSYFILGYHYNYGENFPLSRQKA--LEWYRKAAELGDSSTQEILGDAYMYGD- 137
Query: 135 GAPLNNHYAAKYFQMAC----DGGIL---GSCNN----LGVLYQKGLGVPQDDQRALDLF 183
G P N A ++++ A D G++ GS ++ LGV+Y G GVPQD Q+ L
Sbjct: 138 GFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFKLGVMYAHGQGVPQDYQQTAILM 197
Query: 184 SYACDN 189
A +N
Sbjct: 198 RKAAEN 203
Score = 53.1 bits (126), Expect = 2e-06
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D AL+ Y A G A + +G MF G V +DY +A+++Y+ + G +L
Sbjct: 295 DHNLALEWYRRAAAQGLAEAQDAIGVMFMQGEAVSQDYQQALAWYRKAARQGLPAAQTHL 354
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYF 147
G+MS G+ ++ + A LG Y+ G G P N+ A K++
Sbjct: 355 GIMSAFGR--GVAQSDRQAIAWYRKAAKQDFAKAQYQLGVAYSMG-RGVPENSRNALKWY 411
Query: 148 QMACDGGILGSCNNLGVLYQKG-LGVPQDDQRA 179
A + G + LG +Y G GVP+D+++A
Sbjct: 412 LKAAEQGFTPAQLALGEIYAHGRQGVPKDNKQA 444
Score = 45.8 bits (107), Expect = 4e-04
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 24 ADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMG 83
A S D + AL Y A + G A +LG M A G GV + +AI++Y+ + +
Sbjct: 327 AVSQDYQQALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRKAAKQDFAKA 386
Query: 84 CYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYA 143
Y LG+ ++ G+ + + + A G LG IYA+G G P +N A
Sbjct: 387 QYQLGVAYSMGR--GVPENSRNALKWYLKAAEQGFTPAQLALGEIYAHGRQGVPKDNKQA 444
Query: 144 AKYFQMA 150
++ MA
Sbjct: 445 YIWYYMA 451
>ref|NP_224155.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71807 hypothetical protein jhp1437 - Helicobacter pylori (strain J99)
gb|AAD07008.1| (AE001566) putative [Helicobacter pylori J99]
Length = 256
Score = 56.6 bits (135), Expect = 2e-07
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 12/162 (7%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANG--SG 60
C DA C +LA+ Y N ND +NAL+ Y+ +C+ ++ C L F N G
Sbjct: 100 CKLNDAEKCKDLAEFYFNV-----NDLKNALEYYSKSCKLNNVEGC-MLSATFYNDMIKG 153
Query: 61 VPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM 120
+ KD K + YY +CE N GC LG + G+ K + + AC D
Sbjct: 154 LKKD-KKDLEYYSKACELNNGGGCSKLG--GDYFFGEGVTKDFKKAFEYSAKACELNDAK 210
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 162
GC L Y G G + + + +C G+ +C+ L
Sbjct: 211 GCYALAAFYNEGK-GVAKDEKQTTENLEKSCKLGLKEACDIL 251
>gb|AAH07855.1|AAH07855 (BC007855) KIAA0141 gene product [Homo sapiens]
gb|AAH10452.1|AAH10452 (BC010452) KIAA0141 gene product [Homo sapiens]
gb|AAH11269.1|AAH11269 (BC011269) KIAA0141 gene product [Homo sapiens]
Length = 515
Score = 56.6 bits (135), Expect = 2e-07
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 3/173 (1%)
Query: 22 KNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGND 81
+N S D A + A G A N G +G G P+D KA+ YY+ + G+
Sbjct: 254 ENMKSGDHTAAFSYFQKAAARGYSKAQYNAGLCHEHGRGTPRDISKAVLYYQLAASQGHS 313
Query: 82 MGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNH 141
+ Y + + + V L A ++G A LG ++ L+
Sbjct: 314 LAQYRYARCLLRDPASSWNPERQRAVSLLKQAADSGLREAQAFLGVLFTKEPY---LDEQ 370
Query: 142 YAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESS 194
A KY +A + G S +LG+ Y+KGLGV ++ AL + + G E++
Sbjct: 371 RAVKYLWLAANNGDSQSRYHLGICYEKGLGVQRNLGEALRCYQQSAALGNEAA 423
>ref|NP_106249.1| (NC_002678) unknown protein [Mesorhizobium loti]
dbj|BAB52035.1| (AP003007) unknown protein [Mesorhizobium loti]
Length = 1360
Score = 56.2 bits (134), Expect = 3e-07
Identities = 46/156 (29%), Positives = 67/156 (42%), Gaps = 11/156 (7%)
Query: 39 ACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIY- 97
A GGD A +G +A GV +D A +Y+ S E G Y +G N Y
Sbjct: 1091 AAAGGDAKALFEIGSRYAESRGVKEDMAAAAKWYEKSAELGFAPAEYRIG------NFYE 1144
Query: 98 ---GIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGG 154
G+ + LA G+ NL ++A G +N AA +FQ A D G
Sbjct: 1145 KGIGVARDIKKSKTWYQLAAEQGNASAMHNLAVLFAMAADGVT-DNESAAHWFQEAADLG 1203
Query: 155 ILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
+ S NLG+L KG+G+ Q+ + + F+ G
Sbjct: 1204 VKDSQFNLGILAAKGVGMKQNLEESYKWFALVAKTG 1239
>ref|NP_564049.1| (NM_101684) expressed protein [Arabidopsis thaliana]
gb|AAF78381.1|AC069551_14 (AC069551) T10O22.22 [Arabidopsis thaliana]
Length = 678
Score = 56.2 bits (134), Expect = 3e-07
Identities = 46/190 (24%), Positives = 82/190 (42%), Gaps = 4/190 (2%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G+A A + Y D AL + A G+ + LG ++A G+GV ++Y
Sbjct: 240 GNANAMYKIGLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNY 299
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQV-DLNYLACNAGDMMGCAN 124
KA+ + + + G +G + YG+DK ++ + A + D G N
Sbjct: 300 TKALEWLTLAAKEGLYSAFNGIGYLYVKG--YGVDKKNYTKAREYFEKAVDNEDPSGHYN 357
Query: 125 LGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFS 184
LG +Y G +G + A KYF +A + G + L ++ G+G+ ++ + A +
Sbjct: 358 LGVLYLKG-IGVNRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYK 416
Query: 185 YACDNGFESS 194
+ G SS
Sbjct: 417 LVAERGPWSS 426
Score = 51.6 bits (122), Expect = 6e-06
Identities = 43/168 (25%), Positives = 73/168 (42%), Gaps = 11/168 (6%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANG-SGVPKDYYKAISYYKFSCENGNDMGCYN 86
+++ Q+ Q G+ A +G + G G+ +D+ KA+ ++ + + G
Sbjct: 225 EEDEDFQILEYQAQKGNANAMYKIGLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMEL 284
Query: 87 LGLMSNVNNIY----GIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHY 142
LG IY G+++ ++ LA G +G++Y G N
Sbjct: 285 LG------EIYARGAGVERNYTKALEWLTLAAKEGLYSAFNGIGYLYVKGYGVDKKNYTK 338
Query: 143 AAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
A +YF+ A D NLGVLY KG+GV +D ++A F A + G
Sbjct: 339 AREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQATKYFFVAANAG 386
>ref|NP_245305.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02452.1| (AE006073) unknown [Pasteurella multocida]
Length = 242
Score = 55.8 bits (133), Expect = 3e-07
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 21 KKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGN 80
++ AD + A +L GD A NLG ++A G GVP+D+ KA ++ + E G+
Sbjct: 64 REAADKKEWTRAFELILPLALKGDYQAQANLGILYARGQGVPQDFEKAYWWFSEAAEKGS 123
Query: 81 DMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNN 140
NL + +G+ + + L N+G + LG IY N LN
Sbjct: 124 IKAINNLAVFYLQG--HGVKQDIRHSITLFEKTANSGSLDAMLVLGQIYEN-----ELNQ 176
Query: 141 -HYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRAL 180
A K+++ A + G + L V+Y+ G G ++ ++A+
Sbjct: 177 MTQAFKWYKKAAEAGNHDAQFRLAVMYENGEGTKKNKKQAV 217
Score = 49.7 bits (117), Expect = 2e-05
Identities = 28/74 (37%), Positives = 40/74 (53%), Gaps = 1/74 (1%)
Query: 117 GDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDD 176
GD ANLG +YA G G P + A +F A + G + + NNL V Y +G GV QD
Sbjct: 86 GDYQAQANLGILYARGQ-GVPQDFEKAYWWFSEAAEKGSIKAINNLAVFYLQGHGVKQDI 144
Query: 177 QRALDLFSYACDNG 190
+ ++ LF ++G
Sbjct: 145 RHSITLFEKTANSG 158
>ref|NP_506144.1| (NM_073743) Yeast hypothetical gene L8167.5 like [Caenorhabditis
elegans]
pir||S68303 sel-1 protein - Caenorhabditis elegans
pir||T22223 sel-1 protein - Caenorhabditis elegans
gb|AAC47113.1| (U50829) SEL-1 [Caenorhabditis elegans]
emb|CAB01505.1| (Z78063) predicted using Genefinder~Similarity to Yeast predicted
gene L8167.5 (TR:G544502)~cDNA EST yk53e10.3 comes from
this gene~cDNA EST yk53e10.5 comes from this gene~cDNA
EST yk318c4.5 comes from this gene~cDNA EST yk342b8.3
comes from this gene~>
Length = 685
Score = 55.5 bits (132), Expect = 4e-07
Identities = 50/189 (26%), Positives = 78/189 (40%), Gaps = 6/189 (3%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
GD +A L Q+Y + + E A + A + G A LG M+ +G+ PKD
Sbjct: 287 GDTSAQLGLGQIYLAGGRGLNQNFELAFRYLLAAAESGSADALTYLGKMYLDGTPFTPKD 346
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLAC---NAGDMMG 121
Y K+ Y S + + LG M G+ K + L L+ NA M
Sbjct: 347 YQKSFEYLMKSADKSSPSAQAVLGAMYMKGK--GVKKNYEKALKLLTLSADKKNADGQMY 404
Query: 122 CANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALD 181
A L + + G + + K +Q+A G + + NL ++ G GVP+ A+D
Sbjct: 405 LAELHYKGVPTNKGVHRDFKKSVKLYQLASQNGHILAYYNLAQMHAAGTGVPRSCSHAVD 464
Query: 182 LFSYACDNG 190
LF + G
Sbjct: 465 LFKSVAERG 473
Score = 50.8 bits (120), Expect = 1e-05
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 16/203 (7%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G A L M+ + +++ AL Y + GG+ LA +G+ +++G GVP++
Sbjct: 165 GSPDAQLALGFMHGAGIGVEKSNQAKALVYYMFSALGGNPLAQMAMGFRYSHGVGVPQNC 224
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDK-----------AQLSQVDLNY--L 112
A+SYY+ + D + G + + D+ A L L Y +
Sbjct: 225 ETALSYYQKVAKTVVDNVKFTTG--QTIQRLRLTDETDPTIHMQPGSAPLESNLLEYYKM 282
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLG- 171
+ GD LG IY G G N A +Y A + G + LG +Y G
Sbjct: 283 LADKGDTSAQLGLGQIYLAGGRGLNQNFELAFRYLLAAAESGSADALTYLGKMYLDGTPF 342
Query: 172 VPQDDQRALDLFSYACDNGFESS 194
P+D Q++ + + D S+
Sbjct: 343 TPKDYQKSFEYLMKSADKSSPSA 365
Score = 45.8 bits (107), Expect = 4e-04
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 13/183 (7%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D + +++LY +A Q G +LA NL M A G+GVP+ A+ +K E G +
Sbjct: 422 DFKKSVKLYQLASQNGHILAYYNLAQMHAAGTGVPRSCSHAVDLFKSVAERGK----WGE 477
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGD----LGAPLNNHYA 143
LM ++ Y ++ + + ++A G + NL +I G+ P +N+
Sbjct: 478 RLM-EAHSAYKDNRVDEAAMKYLFMA-ELGYEVAQTNLAYILDRGEATSLFSGPKDNNME 535
Query: 144 AKY--FQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACD-NGFESSCRNYGN 200
+ +Q + + + LG Y GLG D A + A D +G + N G
Sbjct: 536 RAFLNWQRSANQEYAAARVKLGDYYYYGLGTEVDHSLAFSNYKMAVDRHGVAQAMFNLGY 595
Query: 201 FKE 203
E
Sbjct: 596 MHE 598
>gb|AAC47112.1| (U50828) sel-1 gene product [Caenorhabditis elegans]
Length = 685
Score = 55.5 bits (132), Expect = 4e-07
Identities = 50/189 (26%), Positives = 78/189 (40%), Gaps = 6/189 (3%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSG-VPKD 64
GD +A L Q+Y + + E A + A + G A LG M+ +G+ PKD
Sbjct: 287 GDTSAQLGLGQIYLAGGRGLNQNFELAFRYLLAAAESGSADALTYLGKMYLDGTPFTPKD 346
Query: 65 YYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLAC---NAGDMMG 121
Y K+ Y S + + LG M G+ K + L L+ NA M
Sbjct: 347 YQKSFEYLMKSADKSSPSAQAVLGAMYMKGK--GVKKNYEKALKLLTLSADKKNADGQMY 404
Query: 122 CANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALD 181
A L + + G + + K +Q+A G + + NL ++ G GVP+ A+D
Sbjct: 405 LAELHYKGVPTNKGVHRDFKKSVKLYQLASQNGHILAYYNLAQMHAAGTGVPRSCSHAVD 464
Query: 182 LFSYACDNG 190
LF + G
Sbjct: 465 LFKSVAERG 473
Score = 50.8 bits (120), Expect = 1e-05
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 16/203 (7%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G A L M+ + +++ AL Y + GG+ LA +G+ +++G GVP++
Sbjct: 165 GSPDAQLALGFMHGAGIGVEKSNQAKALVYYMFSALGGNPLAQMAMGFRYSHGVGVPQNC 224
Query: 66 YKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDK-----------AQLSQVDLNY--L 112
A+SYY+ + D + G + + D+ A L L Y +
Sbjct: 225 ETALSYYQKVAKTVVDNVKFTTG--QTIQRLRLTDETDPTIHMQPGSAPLESNLLEYYKM 282
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLG- 171
+ GD LG IY G G N A +Y A + G + LG +Y G
Sbjct: 283 LADKGDTSAQLGLGQIYLAGGRGLNQNFELAFRYLLAAAESGSADALTYLGKMYLDGTPF 342
Query: 172 VPQDDQRALDLFSYACDNGFESS 194
P+D Q++ + + D S+
Sbjct: 343 TPKDYQKSFEYLMKSADKSSPSA 365
Score = 45.8 bits (107), Expect = 4e-04
Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 13/183 (7%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D + +++LY +A Q G +LA NL M A G+GVP+ A+ +K E G +
Sbjct: 422 DFKKSVKLYQLASQNGHILAYYNLAQMHAAGTGVPRSCSHAVDLFKSVAERGK----WGE 477
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGD----LGAPLNNHYA 143
LM ++ Y ++ + + ++A G + NL +I G+ P +N+
Sbjct: 478 RLM-EAHSAYKDNRVDEAAMKYLFMA-ELGYEVAQTNLAYILDRGEATSLFSGPKDNNME 535
Query: 144 AKY--FQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACD-NGFESSCRNYGN 200
+ +Q + + + LG Y GLG D A + A D +G + N G
Sbjct: 536 RAFLNWQRSANQEYAAARVKLGDYYYYGLGTEVDHSLAFSNYKMAVDXHGVAQAMFNLGY 595
Query: 201 FKE 203
E
Sbjct: 596 MHE 598
>gb|AAM66148.1|AF326627_1 (AF326627) JHP1437-like protein [Helicobacter pylori]
Length = 253
Score = 54.7 bits (130), Expect = 8e-07
Identities = 43/160 (26%), Positives = 68/160 (41%), Gaps = 12/160 (7%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANG--SG 60
C DA C +LA+ Y N +ND +NAL+ Y+ +C+ ++ C L F N G
Sbjct: 97 CKSNDAEKCKDLAEFYFN-----ANDLKNALEYYSKSCKLNNVEGC-MLSATFYNDMIKG 150
Query: 61 VPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM 120
+ KD K + YY +CE + C +G G+ K + + AC D
Sbjct: 151 LKKD-KKDLEYYSKACELNEALTCTLVGEFYRDGE--GVTKDLKKAFEYSAKACELNDAK 207
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCN 160
GC L Y G G + + + +C G+ +C+
Sbjct: 208 GCYALAAFYNEGK-GVAKDEKQTTENLEKSCKLGLKEACD 246
>gb|AAM66151.1|AF326630_1 (AF326630) JHP1437-like protein [Helicobacter pylori]
Length = 255
Score = 54.7 bits (130), Expect = 8e-07
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 3 CSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANG--SG 60
C DA C +LA+ Y N +ND +NAL+ Y+ +C+ ++ C L F N G
Sbjct: 99 CKSNDAEKCKDLAEFYFN-----ANDLKNALEYYSKSCKLNNVEGC-MLSATFYNDMIKG 152
Query: 61 VPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMM 120
+ KD K + YY +CE + C +G G+ K + + AC D
Sbjct: 153 LKKD-KKDLEYYSKACELNEALTCTLVGEFYRDGE--GVTKDLKKAFEYSAKACELNDAK 209
Query: 121 GCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNL 162
GC L Y G G + + +C G+ +C+ L
Sbjct: 210 GCYALAAFYNEGK-GVAKGEKQTTENLEKSCKLGLKEACDIL 250
>ref|NP_531202.1| (NC_003304) conserved hypothetical protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
gb|AAL41518.1| (AE009019) conserved hypothetical protein [Agrobacterium tumefaciens
str. C58 (U. Washington)]
Length = 1248
Score = 54.3 bits (129), Expect = 1e-06
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 3/154 (1%)
Query: 37 AVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNI 96
A A GD A + + +G GV D +A +YK + + G Y L + N
Sbjct: 976 AEAAAKGDTQALFEIAARYTDGRGVTADRAEAAKWYKMAADRGLAPAQYRLANLYEKAN- 1034
Query: 97 YGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGIL 156
G+++ + LA G+ NL + A+ G P + +A++F A + G+
Sbjct: 1035 -GVERNLVEAKRYYTLAAEQGNAGAMHNLAVLLASDAAGQP-DFATSAQWFIKASELGVR 1092
Query: 157 GSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
S NL +LY +G GV QD + + F+ A +G
Sbjct: 1093 DSQFNLAILYARGSGVKQDIEESYKWFAIAAKDG 1126
>ref|NP_353527.1| (NC_003062) AGR_C_883p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK86312.1| (AE007985) AGR_C_883p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 1214
Score = 54.3 bits (129), Expect = 1e-06
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 3/154 (1%)
Query: 37 AVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNI 96
A A GD A + + +G GV D +A +YK + + G Y L + N
Sbjct: 942 AEAAAKGDTQALFEIAARYTDGRGVTADRAEAAKWYKMAADRGLAPAQYRLANLYEKAN- 1000
Query: 97 YGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGIL 156
G+++ + LA G+ NL + A+ G P + +A++F A + G+
Sbjct: 1001 -GVERNLVEAKRYYTLAAEQGNAGAMHNLAVLLASDAAGQP-DFATSAQWFIKASELGVR 1058
Query: 157 GSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
S NL +LY +G GV QD + + F+ A +G
Sbjct: 1059 DSQFNLAILYARGSGVKQDIEESYKWFAIAAKDG 1092
>gb|AAK64159.1| (AY039982) unknown protein [Arabidopsis thaliana]
Length = 678
Score = 54.3 bits (129), Expect = 1e-06
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D AL + A G+ + LG ++A G+GV ++Y KA+ + + + G +
Sbjct: 262 DHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAAKEGLYSAFNGI 321
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNY-LACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKY 146
G + YG+DK ++ + A + D G NLG +Y G +G + A KY
Sbjct: 322 GYLYVKG--YGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKG-IGVNRDVRQATKY 378
Query: 147 FQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESS 194
F +A + G + L ++ G+G+ ++ + A + + G SS
Sbjct: 379 FFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSS 426
Score = 49.7 bits (117), Expect = 2e-05
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 11/168 (6%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANG-SGVPKDYYKAISYYKFSCENGNDMGCYN 86
+++ Q+ Q G+ A G + G G+ +D+ KA+ ++ + + G
Sbjct: 225 EEDEDFQILEYQAQKGNANAMYKNGLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMEL 284
Query: 87 LGLMSNVNNIY----GIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHY 142
LG IY G+++ ++ LA G +G++Y G N
Sbjct: 285 LG------EIYARGAGVERNYTKALEWLTLAAKEGLYSAFNGIGYLYVKGYGVDKKNYTK 338
Query: 143 AAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
A +YF+ A D NLGVLY KG+GV +D ++A F A + G
Sbjct: 339 AREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQATKYFFVAANAG 386
>dbj|BAB22100.1| (AK002437) data source:SPTR, source key:Q14154,
evidence:ISS~homolog to HYPOTHETICAL PROTEIN
KIAA0141~putative [Mus musculus]
Length = 510
Score = 52.0 bits (123), Expect = 5e-06
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 7/173 (4%)
Query: 22 KNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGND 81
+N + D A + A G A N+G +G G P+D KAI +Y + G+
Sbjct: 255 ENIKTGDYTAAFSYFQKAADRGYSKAQYNVGLCLEHGRGTPRDLSKAILFYHLAAVQGHS 314
Query: 82 MGCYNLG--LMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLN 139
+ Y L+ + ++ D + V L A ++G A LG ++ L+
Sbjct: 315 LAQYRYARCLLQSPGSL--SDPERERAVSLLKQAADSGLTEAQAFLGVLFTK---EPHLD 369
Query: 140 NHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFE 192
A KY +A G S +LG+ Y+KGLG ++ A+ + A G E
Sbjct: 370 EQRAVKYLWLAASNGDSQSRFHLGICYEKGLGAQRNLGEAVKCYQQAAAMGNE 422
>ref|NP_249051.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||F83599 hypothetical protein PA0360 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG03749.1|AE004474_1 (AE004474) hypothetical protein [Pseudomonas aeruginosa]
Length = 328
Score = 50.4 bits (119), Expect = 1e-05
Identities = 32/89 (35%), Positives = 46/89 (50%), Gaps = 1/89 (1%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
A AG + L +Y +GD G P + AA++F+ A + G + N +GVLY +G GV
Sbjct: 87 AAAAGMVRAQIQLAMLYRDGD-GGPQDKTEAARWFRKAAEQGDAAAQNEMGVLYWRGEGV 145
Query: 173 PQDDQRALDLFSYACDNGFESSCRNYGNF 201
QD +A F A +G E + N G F
Sbjct: 146 DQDRVKAGTWFERAAASGSEDAETNLGWF 174
Score = 41.2 bits (95), Expect = 0.009
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Query: 4 SGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPK 63
+ G A LA +Y + + DK A + + A + GD A N +G ++ G GV +
Sbjct: 89 AAGMVRAQIQLAMLYRDG-DGGPQDKTEAARWFRKAAEQGDAAAQNEMGVLYWRGEGVDQ 147
Query: 64 DYYKAISYYKFSCENGNDMGCYNLG--LMSNVNNIYG---------IDKAQLSQVDLNYL 112
D KA ++++ + +G++ NLG + + +Y +D+ S+
Sbjct: 148 DRVKAGTWFERAAASGSEDAETNLGWFYLDDSQGVYSATSDEEAALLDRYAGSREKAFQW 207
Query: 113 ACNA---GDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMA 150
C A GD +G Y NG GA +N A + + A
Sbjct: 208 FCKAATQGDARAQFKVGEAYWNGS-GAGMNKLQARLWLEKA 247
>ref|NP_420846.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK24014.1| (AE005877) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 330
Score = 50.1 bits (118), Expect = 2e-05
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 35/218 (16%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
GD A L +Y + D A++LYA A + GD A N+ M G G+P++
Sbjct: 86 GDTDAMVELGNLYLFGAEGLAVDAPGAVKLYARAARLGDPNAMFNMAVMHRGGYGLPENP 145
Query: 66 YKAISYYKFSCENGNDMGCYNLGL------------------------------MSNVNN 95
A ++Y S E G G + G+ M+ +
Sbjct: 146 RLARAWYLRSGEAGLAAGAFGAGVALLEGYGGRSDARRGVLWLRRAIEMGSAEAMNELGR 205
Query: 96 IY--GIDKAQLSQVDLNYLACNAGDMMGCA--NLGWIYANGDLGAPLNNHYAAKYFQMAC 151
++ G+ + S L + A + + A LG + NG L N A ++FQ+A
Sbjct: 206 LHAEGLGVSSDSDKALYFYRAAARNELPDAMYRLGAAHYNGRL-TDRNYVVAMRWFQLAA 264
Query: 152 DGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDN 189
D G + LGV+ + G GV D + AL ++ A D+
Sbjct: 265 DRGDYDAWFALGVMCETGRGVKSDRELALQMYRRAADS 302
>gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [Helicobacter pylori]
Length = 122
Score = 47.8 bits (112), Expect = 9e-05
Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 143 AAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFK 202
A KYF+ AC+ G C NLG LY G GV +D ++A LF ACD C G
Sbjct: 49 AKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGTLGMLY 108
Query: 203 E 203
E
Sbjct: 109 E 109
Score = 47.4 bits (111), Expect = 1e-04
Identities = 23/69 (33%), Positives = 38/69 (54%)
Query: 22 KNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGND 81
+N + D A + + AC+ D C NLG ++ G GV KD+ KA + ++ +C+ N
Sbjct: 39 ENYKAKDYIKAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNS 98
Query: 82 MGCYNLGLM 90
GC LG++
Sbjct: 99 GGCGTLGML 107
Score = 44.7 bits (104), Expect = 8e-04
Identities = 26/67 (38%), Positives = 35/67 (51%), Gaps = 1/67 (1%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
AC D GC NLG +Y G+ G + A F+ ACD G C LG+LY+ G GV
Sbjct: 56 ACELKDGGGCFNLGRLYYYGE-GVEKDFKKAFALFEKACDLNNSGGCGTLGMLYEFGQGV 114
Query: 173 PQDDQRA 179
++ +A
Sbjct: 115 EKNLTKA 121
Score = 43.5 bits (101), Expect = 0.002
Identities = 24/70 (34%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Query: 63 KDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGC 122
KDY KA Y++ +CE + GC+NLG + G++K L AC+ + GC
Sbjct: 44 KDYIKAKKYFEKACELKDGGGCFNLGRLYYYGE--GVEKDFKKAFALFEKACDLNNSGGC 101
Query: 123 ANLGWIYANG 132
LG +Y G
Sbjct: 102 GTLGMLYEFG 111
>gb|AAG30966.1|AC012396_2 (AC012396) hypothetical protein, 3' partial [Arabidopsis thaliana]
Length = 392
Score = 47.8 bits (112), Expect = 9e-05
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANG-SGVPKDYYKAISYYKFSCENGNDMG-CY 85
+++ Q+ + G+ +A + +G + G G+ +D+ KA+ Y FS N +G Y
Sbjct: 226 EEDEDFQILEYQAEKGNSVAMHKIGLFYYFGLRGLRRDHAKAL--YWFSKAEFNGLGYLY 283
Query: 86 NLGLMSNVNNIYGIDKAQLSQVDLNY-LACNAGDMMGCANLGWIYANGDLGAPLNNHYAA 144
G YG+DK ++ + +A N D G NLG +Y G G + +A
Sbjct: 284 VKG--------YGVDKRNYTKAREYFEMAANNEDPSGHYNLGVLYLKGT-GVKKDVRHAT 334
Query: 145 KYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESS 194
KYF +A + G + L ++ G+G+ ++ + A + + G SS
Sbjct: 335 KYFFVAANAGQPKAFYQLAKMFHTGVGLTKNLEMATTFYKLVAERGPWSS 384
>ref|NP_177498.1| (NM_106015) hypothetical protein [Arabidopsis thaliana]
gb|AAG51809.1|AC079676_4 (AC079676) hypothetical protein; 26401-23451 [Arabidopsis thaliana]
Length = 604
Score = 47.8 bits (112), Expect = 9e-05
Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANG-SGVPKDYYKAISYYKFSCENGNDMG-CY 85
+++ Q+ + G+ +A + +G + G G+ +D+ KA+ Y FS N +G Y
Sbjct: 226 EEDEDFQILEYQAEKGNSVAMHKIGLFYYFGLRGLRRDHAKAL--YWFSKAEFNGLGYLY 283
Query: 86 NLGLMSNVNNIYGIDKAQLSQVDLNY-LACNAGDMMGCANLGWIYANGDLGAPLNNHYAA 144
G YG+DK ++ + +A N D G NLG +Y G G + +A
Sbjct: 284 VKG--------YGVDKRNYTKAREYFEMAANNEDPSGHYNLGVLYLKGT-GVKKDVRHAT 334
Query: 145 KYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESS 194
KYF +A + G + L ++ G+G+ ++ + A + + G SS
Sbjct: 335 KYFFVAANAGQPKAFYQLAKMFHTGVGLTKNLEMATTFYKLVAERGPWSS 384
>ref|NP_102363.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB48149.1| (AP002995) hypothetical protein [Mesorhizobium loti]
Length = 577
Score = 46.6 bits (109), Expect = 2e-04
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 7/188 (3%)
Query: 4 SGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPK 63
S G+ A +LA + + +D + + A GD++A NLG FA G GV +
Sbjct: 345 SAGNQQAQTDLANLILGGAG-EPDDGASVAGWFEAAASSGDLIAAFNLGLCFAKGVGVRQ 403
Query: 64 DYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL-ACNAGDMMGC 122
D +A + + + E + L+ + + A +Q + + A +AG +
Sbjct: 404 DEGQAAHWLRRAAEGVAEAQYMYARLLQDGRGV----AADPTQARVWFARAADAGVLDAR 459
Query: 123 ANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDL 182
L + NG G P A + F+ A G G+ +G LY G G+P D A
Sbjct: 460 VALAEMLLNGRGGMP-EPEAAMQLFEQAAADGHAGAMFAIGALYGAGHGLPLDQTTAQKW 518
Query: 183 FSYACDNG 190
++ A G
Sbjct: 519 YAAAAGRG 526
Score = 42.7 bits (99), Expect = 0.003
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 4/163 (2%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D A Y A + G A L ++ G+GV +D + + + S GN
Sbjct: 296 DFAEAANWYRRAAEAGHQAAARALASLYLTGNGVAEDVEEGARWLRSSASAGNQQA--QT 353
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYF 147
L + + G S A ++GD++ NLG +A G +G + AA +
Sbjct: 354 DLANLILGGAGEPDDGASVAGWFEAAASSGDLIAAFNLGLCFAKG-VGVRQDEGQAAHWL 412
Query: 148 QMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNG 190
+ A + G+ + L Q G GV D +A F+ A D G
Sbjct: 413 RRAAE-GVAEAQYMYARLLQDGRGVAADPTQARVWFARAADAG 454
>ref|NP_455031.1| (NC_003198) probable secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD08893.1| (AL627266) probable secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 223
Score = 45.4 bits (106), Expect = 5e-04
Identities = 24/84 (28%), Positives = 43/84 (50%), Gaps = 7/84 (8%)
Query: 11 CANLAQMYENKKNADSNDKENALQLYAVACQGGDML-------ACNNLGWMFANGSGVPK 63
C ++ N+ NA N+ ++ ++ A+ + D L + LG++ G VP
Sbjct: 9 CILAGVLFANQVNASENNSKDDVKYAALTQKDFDALPVEKRASVLDELGFIHEYGLNVPM 68
Query: 64 DYYKAISYYKFSCENGNDMGCYNL 87
+ +A+ YYK +CE G + GCYN+
Sbjct: 69 NREQALQYYKQACELGGNYGCYNV 92
>dbj|BAA19847.1| (AB003310) chitin synthase regulatory factor [Candida albicans]
Length = 687
Score = 44.7 bits (104), Expect = 8e-04
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 9/178 (5%)
Query: 25 DSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGC 84
D D + A L+ A + G + + + + G G +D KA+ + K + +
Sbjct: 390 DKIDNKEAFILFQSAAKHGHVESAFRTSFCYEEGLGTGRDSRKAVEFLKIAASRNHPAAM 449
Query: 85 YNLGLMSNVNNI-YGIDKAQLSQVDLNYL--ACNAGDMMGCA---NLGWIYANG--DLGA 136
Y LG+ S + + ++ + +L A N + A LG +Y NG D+
Sbjct: 450 YKLGVYSFYGRMGLPANDMNTKKMGIKWLTRAANVATELTAAAPYELGKLYYNGFEDI-V 508
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESS 194
++ Y + F A G L S LG Y+ G VPQD ++ ++ A G +S
Sbjct: 509 LIDKKYGLELFAQAAALGHLQSAAILGHHYEIGEIVPQDSNLSIHYYTQAALGGDPNS 566
>ref|NP_662672.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM73014.1| (AE012932) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 92
Score = 44.7 bits (104), Expect = 8e-04
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 162 LGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKE 203
LG++Y+ GLGV QD + A + + ACDNG + C NY E
Sbjct: 48 LGLMYELGLGVRQDKRTAKEWYGKACDNGNQKGCDNYRRLNE 89
>ref|NP_253206.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||F83081 hypothetical protein PA4516 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG07904.1|AE004865_5 (AE004865) hypothetical protein [Pseudomonas aeruginosa]
Length = 271
Score = 44.3 bits (103), Expect = 0.001
Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 39/158 (24%)
Query: 51 LGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLN 110
LG + +G G+ +D A +++ + E G+ M N
Sbjct: 46 LGQILLDGQGIQRDPTLARTWFTIAAERGHAMA-------------------------RN 80
Query: 111 YLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGL 170
LA C GW G P + AA ++++A G+ + NL L+ G
Sbjct: 81 MLA-------RCLEHGW-------GGPADPAAAAVHYRIAAQAGLDWARYNLANLHATGR 126
Query: 171 GVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRV 208
GVPQD RA L+ A + G S G + E L V
Sbjct: 127 GVPQDQPRAYALYRQAAEQGHAKSMNLVGRYHEEGLVV 164
>ref|NP_103302.1| (NC_002678) unknown protein [Mesorhizobium loti]
dbj|BAB49088.1| (AP002998) unknown protein [Mesorhizobium loti]
Length = 716
Score = 44.3 bits (103), Expect = 0.001
Identities = 43/166 (25%), Positives = 69/166 (40%), Gaps = 4/166 (2%)
Query: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
D A Y A G++ A ++G + G GVPK + + +Y+ + +G L
Sbjct: 482 DYGRAFDPYVRAAALGNLRARTDIGSAYIAGQGVPKLPEEGVLWYRLAASSGWANAITAL 541
Query: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYF 147
G + G+ + + L A + G + ANLG Y G+ G + +
Sbjct: 542 GDAYRLGT--GVKQDYVQAASLYSAAADTGQIDAMANLGQAYLAGE-GVKKDVPRGLELL 598
Query: 148 QMACDGGILGSCNNLGVLYQKG-LGVPQDDQRALDLFSYACDNGFE 192
Q A D G + + LY KG +P D +RAL L + + G E
Sbjct: 599 QRANDMGNRYAPYFMAQLYLKGDRKLPADPRRALALLELSANRGNE 644
Score = 44.3 bits (103), Expect = 0.001
Identities = 43/145 (29%), Positives = 60/145 (40%), Gaps = 11/145 (7%)
Query: 50 NLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIY----GIDKAQLS 105
N+G+M G G DY +A Y + G NL +++ + Y G+ K
Sbjct: 468 NMGYMARVGMGREIDYGRAFDPYVRAAALG------NLRARTDIGSAYIAGQGVPKLPEE 521
Query: 106 QVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVL 165
V LA ++G LG Y G G + AA + A D G + + NLG
Sbjct: 522 GVLWYRLAASSGWANAITALGDAYRLG-TGVKQDYVQAASLYSAAADTGQIDAMANLGQA 580
Query: 166 YQKGLGVPQDDQRALDLFSYACDNG 190
Y G GV +D R L+L A D G
Sbjct: 581 YLAGEGVKKDVPRGLELLQRANDMG 605
Score = 43.5 bits (101), Expect = 0.002
Identities = 37/149 (24%), Positives = 59/149 (38%), Gaps = 3/149 (2%)
Query: 51 LGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLN 110
L + F + + Y A +Y+ + N+G M+ V ID + D
Sbjct: 433 LQFQFGRVLEIARRYSWAEHFYELAGNQQYSAALINMGYMARVGMGREIDYGRA--FDPY 490
Query: 111 YLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGL 170
A G++ ++G Y G G P ++++A G + LG Y+ G
Sbjct: 491 VRAAALGNLRARTDIGSAYIAGQ-GVPKLPEEGVLWYRLAASSGWANAITALGDAYRLGT 549
Query: 171 GVPQDDQRALDLFSYACDNGFESSCRNYG 199
GV QD +A L+S A D G + N G
Sbjct: 550 GVKQDYVQAASLYSAAADTGQIDAMANLG 578
>ref|NP_459433.1| (NC_003197) putative periplasmic protein [Salmonella typhimurium
LT2]
gb|AAL19392.1| (AE008715) putative periplasmic protein [Salmonella typhimurium
LT2]
Length = 503
Score = 43.5 bits (101), Expect = 0.002
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 11 CANLAQMYENKKNADSNDKENALQLYAVACQGGDML-------ACNNLGWMFANGSGVPK 63
C ++ ++ NA +N+ ++ ++ A+ + D L + LG++ G VP
Sbjct: 9 CILAGVLFVSQVNASANNGKDDVKYAALTQKDLDALPVEKRASVLDELGFIHEYGLSVPM 68
Query: 64 DYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQ 106
+ +A+ YYK +CE G + GCYN+ + D AQ ++
Sbjct: 69 NRERALQYYKQACELGGNYGCYNVKYAYQYGDGVAKDSAQANK 111
>ref|NP_286374.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308712.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54982.1|AE005243_11 (AE005243) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34108.1| (AP002552) hypothetical protein [Escherichia coli O157:H7]
Length = 184
Score = 43.5 bits (101), Expect = 0.002
Identities = 26/85 (30%), Positives = 40/85 (46%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G +T+ L + Y + + D A Y + + + A + LGW++ G GV D
Sbjct: 61 GHSTSQYRLGEFYLHGSDGKPLDYTQARYWYEQSAEQENPRAQSKLGWIYLKGLGVKPDT 120
Query: 66 YKAISYYKFSCENGNDMGCYNLGLM 90
KAI +YK + E G Y LGL+
Sbjct: 121 RKAILWYKEAAEQGYAHAQYTLGLI 145
>ref|NP_415180.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P77296|YBET_ECOLI Hypothetical protein ybeT
pir||E64799 ybeT protein - Escherichia coli
gb|AAB40848.1| (U82598) hypothetical protein [Escherichia coli]
gb|AAC73748.1| (AE000169) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35294.1| (D90704) Hypothetical protein SPAC24B11.10c [Escherichia coli]
dbj|BAA35299.1| (D90705) Hypothetical protein SPAC24B11.10c [Escherichia coli]
Length = 184
Score = 43.5 bits (101), Expect = 0.002
Identities = 26/85 (30%), Positives = 40/85 (46%)
Query: 6 GDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDY 65
G +T+ L + Y + + D A Y + + + A + LGW++ G GV D
Sbjct: 61 GHSTSQYRLGEFYLHGSDGKPLDYTQARYWYEQSAEQENPRAQSKLGWIYLKGLGVKPDT 120
Query: 66 YKAISYYKFSCENGNDMGCYNLGLM 90
KAI +YK + E G Y LGL+
Sbjct: 121 RKAILWYKEAAEQGYAHAQYTLGLI 145
>ref|NP_102763.1| (NC_002678) exopolysaccharide regulatory protein exoR
[Mesorhizobium loti]
dbj|BAB48549.1| (AP002996) exopolysaccharide regulatory protein; ExoR
[Mesorhizobium loti]
Length = 276
Score = 43.5 bits (101), Expect = 0.002
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 29 KENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLG 88
KE A + Y A + G + A L M+A G GV +D Y+A ++ + + G
Sbjct: 63 KEQAAEAYKYAAENGQIGATWKLARMYAEGDGVARDDYEAFKFFSEIVDQDVEPGSPEES 122
Query: 89 LMSNVNNIYG--IDKA-QLSQVDLNYLACNAGDMMGCAN---------LGWIYANGDLGA 136
+S+ G + K S V N +A M AN +G ++ G+ G
Sbjct: 123 YVSDALVALGDYLRKGIPGSPVTENEVAAQEYYMRAAANYRNPNAQFEMGQMFLKGEGGV 182
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLG-VLYQKG 169
+ A ++FQ+A G G+ LG +L+Q G
Sbjct: 183 KASVKQAGRWFQLAAAKGHAGAQATLGHLLFQSG 216
>gb|EAA03532.1| (AAAB01008794) agCP14246 [Anopheles gambiae str. PEST]
Length = 443
Score = 43.1 bits (100), Expect = 0.002
Identities = 34/132 (25%), Positives = 52/132 (38%), Gaps = 8/132 (6%)
Query: 64 DYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCA 123
+Y A+S+ K + + +NLG+ YGI K ++ LA G
Sbjct: 301 EYASAVSHLKLGTSHQHAGAAFNLGICYEQG--YGIPKDMAMALECYQLAAKQGHPQAIY 358
Query: 124 NLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQK------GLGVPQDDQ 177
N+G +A G G + A KYF A + G+ + LG Y+ G D
Sbjct: 359 NVGVFHARGFAGLRPSRSMAKKYFLAAAELGLQDAIVALGPKYRTSRRESLASGQQHDSG 418
Query: 178 RALDLFSYACDN 189
L F +A +N
Sbjct: 419 YGLPSFQFALEN 430
>ref|NP_405544.1| (NC_003143) putative exported protein [Yersinia pestis]
emb|CAC90802.1| (AJ414150) putative exported protein [Yersinia pestis]
Length = 720
Score = 42.7 bits (99), Expect = 0.003
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 3/141 (2%)
Query: 15 AQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKF 74
AQ K + D + L+ + ++ A L M+ G GV +D K SY
Sbjct: 569 AQYELGKYHYTCQDYDRGLKWLEKSADHKNIKALFLLAQMYNEGDGVKEDQTKYFSYLLK 628
Query: 75 SCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDL 134
+ + G +G + V G++K + A G++ NLGWIY NGD
Sbjct: 629 AAQLGLSDAQVEIGYLYLVGE--GVEKNLPEAYQWHIKAAEQGNVHAHYNLGWIYQNGD- 685
Query: 135 GAPLNNHYAAKYFQMACDGGI 155
G N A +F +A G+
Sbjct: 686 GTEKNLDKAKFHFTVAAKSGM 706
>ref|NP_540011.1| (NC_003317) EXOPOLYSACCHARIDE PRODUCTION NEGATIVE REGULATOR
PRECURSOR [Brucella melitensis]
gb|AAL52275.1| (AE009549) EXOPOLYSACCHARIDE PRODUCTION NEGATIVE REGULATOR
PRECURSOR [Brucella melitensis]
Length = 267
Score = 42.7 bits (99), Expect = 0.003
Identities = 43/154 (27%), Positives = 70/154 (44%), Gaps = 14/154 (9%)
Query: 29 KENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLG 88
K+ A++ A + G A L M+A G GV +D Y+A ++ G++ G N
Sbjct: 59 KDEAIKALRYAAERGHQGAKWKLARMYAEGDGVAEDDYEAYKIFEKIVREGSEPGSENAP 118
Query: 89 LMSNV---------NNIYGID-KAQLSQVDLNYL--ACNAGDMMGCANLGWIYANGDLGA 136
+++ N I G +A + Y+ A N GD + LG + +G+ G
Sbjct: 119 YVADALVALAGYVKNGIPGSPVQANPNMARELYVQAAANFGDSIAQFELGKMLLDGE-GG 177
Query: 137 PLNNHYAAKYFQMACDGGILGSCNNLG-VLYQKG 169
N AA++FQ+A G G+ LG +L+Q G
Sbjct: 178 ERNAVQAARWFQLAARKGNTGAQAMLGNMLFQAG 211
>pir||T38028 hypothetical protein SPAC1B3.10c - fission yeast
(Schizosaccharomyces pombe)
Length = 700
Score = 42.7 bits (99), Expect = 0.003
Identities = 30/87 (34%), Positives = 43/87 (48%), Gaps = 6/87 (6%)
Query: 18 YENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCE 77
Y + ++DK A + Y+ A GD+ A LG + G G PKDY KA + YK + E
Sbjct: 538 YTQSEQEAAHDKF-AYEFYSRAAAQGDIDAIFKLGDYYYYGIGTPKDYSKAYTCYKIAYE 596
Query: 78 NGN-DMGCYNLGLMSNVNNIYGIDKAQ 103
+ MG +N+ M YGI + Q
Sbjct: 597 QSSIGMGLWNMAYMHE----YGIGRDQ 619
>ref|NP_594794.1| (NC_003424) hypothetical protein [Schizosaccharomyces pombe]
emb|CAB11247.2| (Z98598) hypothetical protein [Schizosaccharomyces pombe]
Length = 680
Score = 42.7 bits (99), Expect = 0.003
Identities = 30/87 (34%), Positives = 43/87 (48%), Gaps = 6/87 (6%)
Query: 18 YENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCE 77
Y + ++DK A + Y+ A GD+ A LG + G G PKDY KA + YK + E
Sbjct: 538 YTQSEQEAAHDKF-AYEFYSRAAAQGDIDAIFKLGDYYYYGIGTPKDYSKAYTCYKIAYE 596
Query: 78 NGN-DMGCYNLGLMSNVNNIYGIDKAQ 103
+ MG +N+ M YGI + Q
Sbjct: 597 QSSIGMGLWNMAYMHE----YGIGRDQ 619
>ref|NP_521481.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD17150.1| (AL646074) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 276
Score = 42.4 bits (98), Expect = 0.004
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 113 ACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGV 172
A + GD LG +Y +G G N AA +F A GI + L Y+ G GV
Sbjct: 156 AADRGDAAAAYYLGLMYRSG-YGTAANTALAAHWFDGAARHGIPAAMFMLANAYRDGDGV 214
Query: 173 PQDDQRALDLFSYACDN 189
P+D+ RAL L+ A ++
Sbjct: 215 PRDEARALALYEQAAEH 231
>ref|NP_473246.1| (NC_000521) predicted using hexExon; MAL3P4.5 (PFC0550w),
Hypothetical protein, len: 808 aa [Plasmodium
falciparum]
pir||T18454 hypothetical protein C0550w - malaria parasite (Plasmodium
falciparum)
emb|CAA15596.1| (AL008970) hypothetical protein, PFC0550w [Plasmodium falciparum
3D7]
Length = 807
Score = 42.4 bits (98), Expect = 0.004
Identities = 48/179 (26%), Positives = 77/179 (42%), Gaps = 22/179 (12%)
Query: 5 GGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKD 64
GGD A +L + Y+ +KN + A + A + ++LA LG ++ G GV KD
Sbjct: 448 GGDVMAMYDLGKKYKEEKNF-----KQAFKYINEASKKNNLLALKELGIIYLYGYGVQKD 502
Query: 65 YYKAISYYKFSCENGN-DMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCA 123
K+I + + E G+ + CY LG + Y ID + ++ L YL A G A
Sbjct: 503 INKSIENFSKAAEAGDVESKCY-LGYI-----YYFIDGYKNLELSLKYLIEAASHDYGEA 556
Query: 124 NLGWIYANGDLGAPLNNHYAAKY--------FQMACDGGILGSCNNLGVLYQKGLGVPQ 174
+ A L + Y + Y ++ + D G + + LY+ G GV Q
Sbjct: 557 --FFFLAEIILDISMRKQYISDYVYEVVFKLYEHSADLGYVQAYFREAQLYEIGKGVKQ 613
Score = 42.4 bits (98), Expect = 0.004
Identities = 46/189 (24%), Positives = 78/189 (40%), Gaps = 16/189 (8%)
Query: 18 YENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCE 77
Y + N + +++ +A + + L + F G + ++ YKA YK E
Sbjct: 340 YVQNLQQNENFIKKSIEFEMIAASLNYIPSILTLAYKFLYGINMKQNCYKAKKLYKNVAE 399
Query: 78 NGNDMGCYNLGLMS-------NVNNIYGIDKAQLSQVD-LNYL--ACNAGDMMGCANLGW 127
N + N+ L N+N I+ + ++ + L +L GD+M +LG
Sbjct: 400 NVMNSDYINIPLSELDLLNGENLNMHNEINNMKNNEEEILEFLNEQIKGGDVMAMYDLGK 459
Query: 128 IYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYAC 187
Y N A KY A L + LG++Y G GV +D ++++ FS A
Sbjct: 460 KYKEEK-----NFKQAFKYINEASKKNNLLALKELGIIYLYGYGVQKDINKSIENFSKAA 514
Query: 188 DNG-FESSC 195
+ G ES C
Sbjct: 515 EAGDVESKC 523
>gb|EAA08334.1| (AAAB01008879) agCP2877 [Anopheles gambiae str. PEST]
Length = 443
Score = 42.4 bits (98), Expect = 0.004
Identities = 34/132 (25%), Positives = 51/132 (37%), Gaps = 8/132 (6%)
Query: 64 DYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCA 123
+Y A+S+ K + + +NLG+ YGI K + LA G
Sbjct: 301 EYASAVSHLKLGTSHQHAGAAFNLGICYEQG--YGIPKDMAMAFECYQLAAKQGHPQAIY 358
Query: 124 NLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQK------GLGVPQDDQ 177
N+G +A G G + A KYF A + G+ + LG Y+ G D
Sbjct: 359 NVGVFHARGFAGLRPSRSMAKKYFLAAAELGLQDAIVALGPKYRTSRRESLASGQQHDSG 418
Query: 178 RALDLFSYACDN 189
L F +A +N
Sbjct: 419 YGLPSFQFALEN 430
>ref|NP_439767.1| (NC_000907) H. influenzae predicted coding region HI1625
[Haemophilus influenzae Rd]
sp|P44277|YG25_HAEIN Hypothetical protein HI1625
pir||H64038 hypothetical protein HI1625 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC23273.1| (U32835) H. influenzae predicted coding region HI1625 [Haemophilus
influenzae Rd]
Length = 165
Score = 42.0 bits (97), Expect = 0.005
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 7 DATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYY 66
D A NLAQ + NK+ D N + Y +A +G ++ A +NLG ++ G G +DY
Sbjct: 33 DDQARMNLAQEFANKQQWI--DVFNIM--YPMALEG-NITAQSNLGMLYNLGRGTVRDYE 87
Query: 67 KAISYYKFSCENGNDMGCYNLGLM 90
KA ++ + E G+ G NLG+M
Sbjct: 88 KAYWWFSEAAEKGSVKGLNNLGVM 111
>ref|NP_564992.1| (NM_105727) expressed protein [Arabidopsis thaliana]
gb|AAK59789.1| (AY037204) At1g70590/F5A18_23 [Arabidopsis thaliana]
Length = 351
Score = 42.0 bits (97), Expect = 0.005
Identities = 35/130 (26%), Positives = 57/130 (42%), Gaps = 5/130 (3%)
Query: 25 DSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGC 84
+ +KE A+ LY A + GD + NLG + P + +A+ + K S ENG
Sbjct: 154 ERGEKEKAVNLYRRASELGDAVGQCNLGIAYLQVQ--PSNPKEAMKWLKQSAENGYVRAQ 211
Query: 85 YNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAA 144
Y L L + + + + ++ L A G + N+ Y+ G+ G P N A
Sbjct: 212 YQLALCLHHGRVVQTNLLEATKWYLK--AAEGGYVRAMYNISLCYSVGE-GLPQNRKLAR 268
Query: 145 KYFQMACDGG 154
K+ + A D G
Sbjct: 269 KWMKRAADHG 278
>gb|AAF45339.1| (AE003066) CG13865 gene product [Drosophila melanogaster]
gb|AAM52744.1| (AY122232) RE58665p [Drosophila melanogaster]
Length = 266
Score = 41.6 bits (96), Expect = 0.007
Identities = 42/176 (23%), Positives = 69/176 (38%), Gaps = 13/176 (7%)
Query: 2 GCSGGDATACANLAQMYENKKNADSNDKE--NALQLYAVACQGGDMLACNNLGWMFANGS 59
GC+ D+ AC + + +K D L+ +C + AC L M +G
Sbjct: 99 GCNLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYLSGMHISG- 157
Query: 60 GVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYLACNAGDM 119
K + +G+ G ++ Y + K + AC +M
Sbjct: 158 -----VQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAFQFAHKACELRNM 212
Query: 120 MGCANLGWIYANGDLGAPLNNHYAAKYFQMACD--GGILGSCNNLGVLYQKGLGVP 173
CANL +YA GD G N A KY ++A + + + LG +Q+G+G+P
Sbjct: 213 YACANLSQMYARGD-GIEKNEKEAEKYKKLALEMQDEVKKQHDTLG--FQQGVGMP 265
>dbj|BAA23166.1| (D83080) mercuric resistance protein [Pseudomonas sp. K-62]
Length = 217
Score = 41.6 bits (96), Expect = 0.007
Identities = 39/151 (25%), Positives = 66/151 (42%), Gaps = 32/151 (21%)
Query: 41 QGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGID 100
+ GD +A N +G + G GV +++ +I +++ + E G +NLG +YG
Sbjct: 61 RAGDAMAQNIMGLAYKCGMGVKQNHAASIQWFRRAAEQGEADAQFNLG------RLYG-- 112
Query: 101 KAQLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCN 160
S+VD +Y NG AP N+ A K++++A + G +
Sbjct: 113 ----SEVD------------------GMYKNG-RAAPANDAEAFKWYRLAAEQGHTQAQV 149
Query: 161 NLGVLYQKGL-GVPQDDQRALDLFSYACDNG 190
L L+ KGL + D +A S A +G
Sbjct: 150 RLAQLFAKGLTDIAPDQVQAYQWMSLAAASG 180
>ref|NP_455035.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD08897.1| (AL627266) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 384
Score = 41.6 bits (96), Expect = 0.007
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 125 LGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFS 184
LG+ Y NG G + +++++A G + + NLG +Y G VP D RA + F
Sbjct: 135 LGYFYLNGKRGIKRDLQKGGQWYELAAAQGNVDALINLGEIYYSGTRVPLDYARAFEFFE 194
Query: 185 YACDNGFESSCRNY 198
A G +S NY
Sbjct: 195 RAAKMG-KSRALNY 207
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.138 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,517,230
Number of Sequences: 1026957
Number of extensions: 7392791
Number of successful extensions: 13371
Number of sequences better than 1.0e-02: 97
Number of HSP's better than 0.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 12398
Number of HSP's gapped (non-prelim): 473
length of query: 225
length of database: 324,149,939
effective HSP length: 117
effective length of query: 108
effective length of database: 203,995,970
effective search space: 22031564760
effective search space used: 22031564760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 95 (41.2 bits)