BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645260|ref|NP_207430.1| hypothetical protein
[Helicobacter pylori 26695]
(92 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207430.1| (NC_000915) hypothetical protein [Helicoba... 186 5e-47
ref|NP_223297.1| (NC_000921) putative [Helicobacter pylori ... 167 3e-41
gb|AAL05625.1|AF352051_1 (AF352051) proliferation potential... 41 0.003
dbj|BAB15600.1| (AK026954) unnamed protein product [Homo sa... 41 0.003
ref|XP_056260.3| (XM_056260) retinoblastoma-binding protein... 41 0.003
pir||T50609 hypothetical protein DKFZp761B2423.1 - human (f... 41 0.003
ref|XP_133757.1| (XM_133757) similar to proliferation poten... 39 0.009
gb|AAB49620.1| (U28789) PACT [Mus musculus] 39 0.009
pir||T42727 proliferation potential-related protein - mouse... 39 0.009
>ref|NP_207430.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64599 hypothetical protein HP0636 - Helicobacter pylori (strain 26695)
gb|AAD07713.1| (AE000578) H. pylori predicted coding region HP0636 [Helicobacter
pylori 26695]
Length = 92
Score = 186 bits (472), Expect = 5e-47
Identities = 92/92 (100%), Positives = 92/92 (100%)
Query: 1 MRIVRNLFLVSFVAYSSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLE 60
MRIVRNLFLVSFVAYSSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLE
Sbjct: 1 MRIVRNLFLVSFVAYSSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLE 60
Query: 61 GIDLEKSPNLKSHKKSDKKFYKQLAKNNIAEG 92
GIDLEKSPNLKSHKKSDKKFYKQLAKNNIAEG
Sbjct: 61 GIDLEKSPNLKSHKKSDKKFYKQLAKNNIAEG 92
>ref|NP_223297.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71915 hypothetical protein jhp0579 - Helicobacter pylori (strain J99)
gb|AAD06151.1| (AE001490) putative [Helicobacter pylori J99]
Length = 137
Score = 167 bits (422), Expect = 3e-41
Identities = 84/98 (85%), Positives = 87/98 (88%), Gaps = 6/98 (6%)
Query: 1 MRIVRNLFLVSFVAYSSVFATDLETETKSEKKSSKKFYKFHKNH------KNDKKLYDFT 54
MRIVRNLFLVSFVAYSS FA DLET TK++KKS KKFYK HKNH KNDKKLYDFT
Sbjct: 1 MRIVRNLFLVSFVAYSSAFAADLETGTKNDKKSGKKFYKLHKNHGSETETKNDKKLYDFT 60
Query: 55 KNSGLEGIDLEKSPNLKSHKKSDKKFYKQLAKNNIAEG 92
KNSGLEG+DLEKSPNLKSHKKSDKKFYKQLAKNNIAEG
Sbjct: 61 KNSGLEGVDLEKSPNLKSHKKSDKKFYKQLAKNNIAEG 98
>gb|AAL05625.1|AF352051_1 (AF352051) proliferation potential-related protein [Homo sapiens]
Length = 1616
Score = 40.8 bits (94), Expect = 0.003
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 16 SSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKK 75
SS + + + K +KK KK +K HK HK K K++G E ++LEKS K KK
Sbjct: 1540 SSASSAESQDSKKKKKKKEKKKHKKHKKHKKHK------KHAGTE-VELEKSQKHKHKKK 1592
Query: 76 SDKK 79
KK
Sbjct: 1593 KSKK 1596
>dbj|BAB15600.1| (AK026954) unnamed protein product [Homo sapiens]
Length = 628
Score = 40.8 bits (94), Expect = 0.003
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 16 SSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKK 75
SS + + + K +KK KK +K HK HK K K++G E ++LEKS K KK
Sbjct: 552 SSASSAESQDSKKKKKKKEKKKHKKHKKHKKHK------KHAGTE-VELEKSQKHKHKKK 604
Query: 76 SDKK 79
KK
Sbjct: 605 KSKK 608
>ref|XP_056260.3| (XM_056260) retinoblastoma-binding protein 6 [Homo sapiens]
Length = 1560
Score = 40.8 bits (94), Expect = 0.003
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 16 SSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKK 75
SS + + + K +KK KK +K HK HK K K++G E ++LEKS K KK
Sbjct: 1484 SSASSAESQDSKKKKKKKEKKKHKKHKKHKKHK------KHAGTE-VELEKSQKHKHKKK 1536
Query: 76 SDKK 79
KK
Sbjct: 1537 KSKK 1540
>pir||T50609 hypothetical protein DKFZp761B2423.1 - human (fragment)
emb|CAB94869.1| (AL359564) hypothetical protein [Homo sapiens]
Length = 529
Score = 40.8 bits (94), Expect = 0.003
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 16 SSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKK 75
SS + + + K +KK KK +K HK HK K K++G E ++LEKS K KK
Sbjct: 453 SSASSAESQDSKKKKKKKEKKKHKKHKKHKKHK------KHAGTE-VELEKSQKHKHKKK 505
Query: 76 SDKK 79
KK
Sbjct: 506 KSKK 509
>ref|XP_133757.1| (XM_133757) similar to proliferation potential-related protein [Mus
musculus]
Length = 1622
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 16 SSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKK 75
SS + + K +KK KK +K HK HK K K++G +G D+EKS K KK
Sbjct: 1548 SSASSAGSQDSKKKKKKKEKKKHKKHKKHKKHK------KHAGADG-DVEKSQKHKHKKK 1600
Query: 76 SDKK 79
KK
Sbjct: 1601 KAKK 1604
>gb|AAB49620.1| (U28789) PACT [Mus musculus]
Length = 1587
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 16 SSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKK 75
SS + + K +KK KK +K HK HK K K++G +G D+EKS K KK
Sbjct: 1513 SSASSAGSQDSKKKKKKKEKKKHKKHKKHKKHK------KHAGADG-DVEKSQKHKHKKK 1565
Query: 76 SDKK 79
KK
Sbjct: 1566 KAKK 1569
>pir||T42727 proliferation potential-related protein - mouse
gb|AAC72432.1| (U83913) proliferation potential-related protein [Mus musculus]
Length = 1560
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 16 SSVFATDLETETKSEKKSSKKFYKFHKNHKNDKKLYDFTKNSGLEGIDLEKSPNLKSHKK 75
SS + + K +KK KK +K HK HK K K++G +G D+EKS K KK
Sbjct: 1486 SSASSAGSQDSKKKKKKKEKKKHKKHKKHKKHK------KHAGADG-DVEKSQKHKHKKK 1538
Query: 76 SDKK 79
KK
Sbjct: 1539 KAKK 1542
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.312 0.129 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,463,692
Number of Sequences: 1026957
Number of extensions: 1925830
Number of successful extensions: 7219
Number of sequences better than 1.0e-02: 9
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7192
Number of HSP's gapped (non-prelim): 12
length of query: 92
length of database: 324,149,939
effective HSP length: 68
effective length of query: 24
effective length of database: 254,316,863
effective search space: 6103604712
effective search space used: 6103604712
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 90 (39.3 bits)