BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645261|ref|NP_207431.1| hypothetical protein
[Helicobacter pylori 26695]
         (150 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207431.1|  (NC_000915) hypothetical protein [Helicoba...   317  2e-86
ref|NP_223298.1|  (NC_000921) putative [Helicobacter pylori ...   306  6e-83
gb|EAA09017.1|  (AAAB01008898) agCP14098 [Anopheles gambiae ...    44  5e-04

>ref|NP_207431.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64599 hypothetical protein HP0637 - Helicobacter pylori (strain 26695)
 gb|AAD07714.1| (AE000578) H. pylori predicted coding region HP0637 [Helicobacter
           pylori 26695]
          Length = 150

 Score =  317 bits (813), Expect = 2e-86
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MHQNNKTFLPSQSAHLSKIILFLNTGFLAYLLSACGANVPIEEVLVKDPKETKAQEVARE 60
           MHQNNKTFLPSQSAHLSKIILFLNTGFLAYLLSACGANVPIEEVLVKDPKETKAQEVARE
Sbjct: 1   MHQNNKTFLPSQSAHLSKIILFLNTGFLAYLLSACGANVPIEEVLVKDPKETKAQEVARE 60

Query: 61  EKAIQQENATIDARTTPLINRFTNYSAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM 120
           EKAIQQENATIDARTTPLINRFTNYSAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM
Sbjct: 61  EKAIQQENATIDARTTPLINRFTNYSAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM 120

Query: 121 PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY 150
           PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY
Sbjct: 121 PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY 150



>ref|NP_223298.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71912 hypothetical protein jhp0580 - Helicobacter pylori (strain J99)
 gb|AAD06171.1| (AE001491) putative [Helicobacter pylori J99]
          Length = 150

 Score =  306 bits (783), Expect = 6e-83
 Identities = 142/150 (94%), Positives = 146/150 (96%)

Query: 1   MHQNNKTFLPSQSAHLSKIILFLNTGFLAYLLSACGANVPIEEVLVKDPKETKAQEVARE 60
           MHQNNKTFLP+QSAHLSKI+LFLNTG LAYLLSACGANVPIEEV+VKDPKETKAQEVARE
Sbjct: 1   MHQNNKTFLPNQSAHLSKIVLFLNTGLLAYLLSACGANVPIEEVIVKDPKETKAQEVARE 60

Query: 61  EKAIQQENATIDARTTPLINRFTNYSAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM 120
           E AIQQENA ID RTTPLINRFTNY+AYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM
Sbjct: 61  ENAIQQENAIIDVRTTPLINRFTNYNAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYM 120

Query: 121 PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY 150
           PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY
Sbjct: 121 PYGFMPYGSGLMPYGPYGYGAPGYFPYAFY 150



>gb|EAA09017.1| (AAAB01008898) agCP14098 [Anopheles gambiae str. PEST]
          Length = 143

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 39/115 (33%), Positives = 49/115 (41%), Gaps = 8/115 (6%)

Query: 39  VPIEEVLVKDPKETKAQEVAREEKAIQQENATIDARTTPLINRFTNYSAYGSLNGFYNSV 98
           VPI+           A   + + KA QQ  AT      P  +R   +  +G +      +
Sbjct: 5   VPIQNTRSTGVSVPTASLESVDSKANQQP-ATRQLANDPEADRNKRHLGFGGIGIGVGLI 63

Query: 99  DNLNSPMQNGMYGGYYMPY--YYMPYGFMPYGSGLMPYGPYGYGAPGYF--PYAF 149
               SP  N  YGGYY  +  YY  YG   +G G    GPYGYGAP  F  PY F
Sbjct: 64  GGGFSPYDNYGYGGYYGGHEGYYGGYG-NQFGGGF--GGPYGYGAPPGFGSPYGF 115



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.318    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,955,425
Number of Sequences: 1026957
Number of extensions: 5368548
Number of successful extensions: 16559
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16545
Number of HSP's gapped (non-prelim): 5
length of query: 150
length of database: 324,149,939
effective HSP length: 110
effective length of query: 40
effective length of database: 211,184,669
effective search space: 8447386760
effective search space used: 8447386760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 91 (39.7 bits)