BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644695|ref|NP_206865.1| hypothetical protein
[Helicobacter pylori 26695]
(117 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206865.1| (NC_000915) hypothetical protein [Helicoba... 238 1e-62
ref|NP_222782.1| (NC_000921) putative [Helicobacter pylori ... 167 2e-41
pir||T47237 myosin II heavy chain [imported] - Naegleria fo... 45 1e-04
>ref|NP_206865.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64528 hypothetical protein HP0065 - Helicobacter pylori (strain 26695)
gb|AAD07142.1| (AE000528) H. pylori predicted coding region HP0065 [Helicobacter
pylori 26695]
Length = 117
Score = 238 bits (606), Expect = 1e-62
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MFSHEVYLEGCTLELRKICDDFEKNAMQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQ 60
MFSHEVYLEGCTLELRKICDDFEKNAMQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQ
Sbjct: 1 MFSHEVYLEGCTLELRKICDDFEKNAMQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQ 60
Query: 61 RRIIDEQIEEAKSLMRQIDMNFHPSSEIDRLMREAKEHEREASKRYDEYLKSKDKND 117
RRIIDEQIEEAKSLMRQIDMNFHPSSEIDRLMREAKEHEREASKRYDEYLKSKDKND
Sbjct: 61 RRIIDEQIEEAKSLMRQIDMNFHPSSEIDRLMREAKEHEREASKRYDEYLKSKDKND 117
>ref|NP_222782.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71978 hypothetical protein jhp0060 - Helicobacter pylori (strain J99)
gb|AAD05644.1| (AE001445) putative [Helicobacter pylori J99]
Length = 117
Score = 167 bits (423), Expect = 2e-41
Identities = 84/118 (71%), Positives = 100/118 (84%), Gaps = 3/118 (2%)
Query: 1 MFSHEVYLEGCTLELRKICDDFEKNAMQDDLGQKLRSDVLEDMLKIAHDLENLEDDTQYQ 60
+FSH+V+LEGCT ELR+ICD F + AMQDDLGQKL+S+ LE+MLKIAHDLENLE +TQY+
Sbjct: 2 LFSHKVFLEGCTNELRRICDSFVEGAMQDDLGQKLKSEALENMLKIAHDLENLEQETQYE 61
Query: 61 RRIIDEQIEEAKSLMRQIDM-NFHPSSEIDRLMREAKEHEREASKRYDEYLKSKDKND 117
R I+EQ+EEAK L +Q+DM + H SEIDRLMREAKEHEREA +RY EYL KDKND
Sbjct: 62 MRKINEQLEEAKRLEKQVDMQDRHSQSEIDRLMREAKEHEREAKRRYGEYL--KDKND 117
>pir||T47237 myosin II heavy chain [imported] - Naegleria fowleri (fragment)
gb|AAB01786.1| (U43192) myosin II heavy chain [Naegleria fowleri]
Length = 746
Score = 45.4 bits (106), Expect = 1e-04
Identities = 33/107 (30%), Positives = 59/107 (54%), Gaps = 8/107 (7%)
Query: 9 EGCTLELRKICDDFEKNAMQDDLG------QKLRSDVLEDMLKIAHDLENLEDDTQYQRR 62
E T E +K + E ++++DDL ++L+SD LE + A++LENL DT+ +
Sbjct: 102 EARTKEAQKKSTEMELSSVKDDLNRTKQRAEQLQSD-LEAQRERANELENLLSDTEGGKN 160
Query: 63 IIDEQIEEAKSLMRQIDMNFHP-SSEIDRLMREAKEHEREASKRYDE 108
+D Q ++ ++ ++ N SE +RL RE +E +R S + +E
Sbjct: 161 QLDSQFKQLQNELQNERTNLQKMKSENERLQRELEEMKRSLSDKQNE 207
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.133 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,644,276
Number of Sequences: 1026957
Number of extensions: 2376436
Number of successful extensions: 11071
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11066
Number of HSP's gapped (non-prelim): 5
length of query: 117
length of database: 324,149,939
effective HSP length: 93
effective length of query: 24
effective length of database: 228,642,938
effective search space: 5487430512
effective search space used: 5487430512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 90 (39.3 bits)