BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645263|ref|NP_207433.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(226 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207433.1| (NC_000915) conserved hypothetical protein... 460 e-129
ref|NP_223300.1| (NC_000921) putative [Helicobacter pylori ... 446 e-125
ref|NP_243110.1| (NC_002570) aluminum resistance protein [B... 195 3e-49
ref|NP_350210.1| (NC_003030) PP-loop superfamily ATPase, co... 192 3e-48
ref|NP_389255.1| (NC_000964) similar to hypothetical protei... 180 9e-45
ref|NP_231010.1| (NC_002505) exsB protein [Vibrio cholerae]... 179 3e-44
ref|NP_421954.1| (NC_002696) exsB protein [Caulobacter cres... 176 2e-43
ref|NP_371236.1| (NC_002758) conserved hypothetical protein... 175 4e-43
gb|AAD54291.1| (AF174387) HI1191 [Haemophilus influenzae] 169 2e-41
ref|NP_655243.1| (NC_003995) ThiI, Thiamine biosynthesis pr... 169 3e-41
ref|NP_406625.1| (NC_003143) conserved hypothetical protein... 167 8e-41
ref|NP_455052.1| (NC_003198) conserved hypothetical protein... 164 5e-40
ref|NP_245123.1| (NC_002663) unknown [Pasteurella multocida... 163 1e-39
ref|NP_414978.1| (NC_000913) orf, hypothetical protein [Esc... 163 2e-39
ref|NP_273570.1| (NC_003112) aluminum resistance protein, p... 162 3e-39
ref|NP_286186.1| (NC_002655) orf, hypothetical protein [Esc... 162 3e-39
ref|NP_283503.1| (NC_003116) hypothetical protein NMA0702 [... 161 6e-39
emb|CAD31298.1| (AL672114) CONSERVED HYPOTHETICAL PROTEIN [... 158 5e-38
ref|NP_106513.1| (NC_002678) hypothetical protein [Mesorhiz... 158 5e-38
pir||PC4440 aluminum tolerance protein - Arthrobacter visco... 150 1e-35
gb|AAC05081.1| (AF022216) aluminum resistance protein [Arth... 147 9e-35
ref|NP_660795.1| (NC_004061) hypothetical 25.5 kD protein i... 142 2e-33
ref|NP_394411.1| (NC_002578) transcription regulator (exsB)... 131 6e-30
ref|NP_111615.1| (NC_002689) Predicted ATPase (PP-loop supe... 130 1e-29
ref|NP_249667.1| (NC_002516) conserved hypothetical protein... 126 2e-28
ref|NP_439347.1| (NC_000907) conserved hypothetical protein... 121 5e-27
emb|CAB50783.1| (X74218) hypothetical protein [Pseudomonas ... 120 9e-27
ref|NP_281238.1| (NC_002163) putative transcriptional regul... 116 2e-25
ref|NP_213564.1| (NC_000918) trans-regulatory protein ExsB ... 115 4e-25
ref|NP_518859.1| (NC_003295) HYPOTHETICAL SIGNAL PEPTIDE PR... 109 3e-23
ref|NP_442743.1| (NC_000911) ExsB protein [Synechocystis sp... 107 8e-23
ref|NP_299144.1| (NC_002488) transcriptional regulator [Xyl... 107 8e-23
ref|NP_643446.1| (NC_003919) transcriptional regulator [Xan... 107 1e-22
ref|NP_638361.1| (NC_003902) transcriptional regulator [Xan... 105 5e-22
ref|NP_489135.1| (NC_003272) hypothetical protein [Nostoc s... 105 5e-22
ref|NP_360707.1| (NC_003103) trans-regulatory protein ExsB ... 94 9e-19
ref|NP_142102.1| (NC_000961) hypothetical protein [Pyrococc... 91 1e-17
ref|NP_069278.1| (NC_000917) succinoglycan biosynthesis reg... 89 3e-17
ref|NP_221055.1| (NC_000963) unknown [Rickettsia prowazekii... 89 5e-17
ref|NP_661432.1| (NC_002932) ExsB protein [Chlorobium tepid... 88 6e-17
ref|NP_539013.1| (NC_003317) SUCCINOGLYCAN BIOSYNTHESIS REG... 86 2e-16
ref|NP_395803.1| (NC_002608) succinoglycan biosynthesis; Ex... 86 2e-16
ref|NP_341593.1| (NC_002754) Transcription regulator (exsB)... 86 3e-16
ref|NP_357259.1| (NC_003063) AGR_L_2950p [Agrobacterium tum... 85 7e-16
ref|NP_378319.1| (NC_003106) 460aa long hypothetical succin... 84 2e-15
ref|NP_106396.1| (NC_002678) succinoglycan biosynthesis reg... 83 3e-15
ref|NP_577777.1| (NC_003413) succinoglycan biosynthesis reg... 82 3e-15
emb|CAD31242.1| (AL672115) HYPOTHETICAL CONSERVED PROTEIN [... 82 3e-15
ref|NP_125784.1| (NC_000868) hypothetical protein [Pyrococc... 81 1e-14
ref|NP_248349.1| (NC_000909) ExsB [Methanococcus jannaschii... 80 2e-14
ref|NP_437603.1| (NC_003078) hypothetical conserved protein... 80 2e-14
ref|NP_632777.1| (NC_003901) conserved protein [Methanosarc... 79 3e-14
ref|NP_276236.1| (NC_000916) conserved protein [Methanother... 76 3e-13
pir||S60183 protein ExsB - Rhizobium meliloti >gi|1143535|e... 75 7e-13
ref|NP_619065.1| (NC_003552) succinoglycan biosynthesis reg... 71 1e-11
ref|NP_614348.1| (NC_003551) Predicted PP-loop superfamily ... 54 1e-06
ref|NP_106938.1| (NC_002678) hypothetical protein [Mesorhiz... 52 7e-06
ref|NP_359195.1| (NC_003098) Conserved hypothetical protein... 50 1e-05
ref|NP_559745.1| (NC_003364) conserved hypothetical protein... 49 3e-05
ref|NP_342072.1| (NC_002754) Conserved hypothetical protein... 44 0.001
ref|NP_377877.1| (NC_003106) 202aa long conserved hypotheti... 42 0.005
ref|NP_577827.1| (NC_003413) NH(3)-dependent NAD+ synthetas... 42 0.005
ref|NP_142181.1| (NC_000961) NH(3)-dependent NAD(+) synthet... 42 0.007
>ref|NP_207433.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||G64599 conserved hypothetical protein HP0639 - Helicobacter pylori
(strain 26695)
gb|AAD07701.1| (AE000578) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 226
Score = 460 bits (1184), Expect = e-129
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE 60
MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE
Sbjct: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE 60
Query: 61 IIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN 120
IIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN
Sbjct: 61 IIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN 120
Query: 121 IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVL 180
IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVL
Sbjct: 121 IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVL 180
Query: 181 DLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANKK 226
DLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANKK
Sbjct: 181 DLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANKK 226
>ref|NP_223300.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71912 hypothetical protein jhp0582 - Helicobacter pylori (strain J99)
gb|AAD06173.1| (AE001491) putative [Helicobacter pylori J99]
Length = 225
Score = 446 bits (1147), Expect = e-125
Identities = 217/223 (97%), Positives = 222/223 (99%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE 60
MEQ+ICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE
Sbjct: 1 MEQEICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE 60
Query: 61 IIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN 120
IIPLDFLENIT SALFKNSNDL+GHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN
Sbjct: 61 IIPLDFLENITHSALFKNSNDLMGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN 120
Query: 121 IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVL 180
IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKI+TPLMFL+KAQEFQMAKDLGVL
Sbjct: 121 IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKIVTPLMFLSKAQEFQMAKDLGVL 180
Query: 181 DLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQA 223
DL+IKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQA
Sbjct: 181 DLIIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQA 223
>ref|NP_243110.1| (NC_002570) aluminum resistance protein [Bacillus halodurans]
dbj|BAB05963.1| (AP001514) aluminum resistance protein [Bacillus halodurans]
Length = 223
Score = 195 bits (496), Expect = 3e-49
Identities = 97/225 (43%), Positives = 145/225 (64%), Gaps = 9/225 (4%)
Query: 2 EQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEI 61
++K V+ FSGGQDSTT WA K F +V V FDY Q+H+ E+ECA++IA L + + +
Sbjct: 4 KKKKAVVVFSGGQDSTTCLFWALKTFDEVATVTFDYGQRHAEEIECAKEIAEQLGVSFRV 63
Query: 62 IPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNI 121
+ + L +T SAL + I +N +LP++FVP RN +F++ YA+++GA ++
Sbjct: 64 LDMTLLNQLTESALTREE---IAVKDGENGELPSTFVPGRNQLFLSFAAVYAKQIGARHL 120
Query: 122 ALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLD 181
GV + D+SGYPDC++ FIKS+ LNL + I TPLM+L+KA+ +++A +LG LD
Sbjct: 121 VTGVCETDYSGYPDCRDVFIKSLNVTLNLAMDDQFVIHTPLMWLDKAETWKLADELGALD 180
Query: 182 LVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANKK 226
V ++T TCY G R G GC +CPAC LR++G E + A K+
Sbjct: 181 FVREKTLTCYHGIR------GDGCGECPACMLRRRGLELYLAEKE 219
>ref|NP_350210.1| (NC_003030) PP-loop superfamily ATPase, confers aluminum resistance
[Clostridium acetobutylicum]
gb|AAK81550.1|AE007858_11 (AE007858) PP-loop superfamily ATPase, confers aluminum resistance
[Clostridium acetobutylicum]
Length = 222
Score = 192 bits (487), Expect = 3e-48
Identities = 97/216 (44%), Positives = 140/216 (63%), Gaps = 8/216 (3%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPLDF 66
++ FSGGQDSTT WAKKR+K+V V FDY QKH +ELECA+ I + + I+ +
Sbjct: 11 LVVFSGGQDSTTCLFWAKKRYKEVVAVSFDYNQKHKLELECAKDICKKHGVEHHILDMKL 70
Query: 67 LENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVS 126
L + ++L + D+ A PN+FV RN +F++ +A++ G +NI GVS
Sbjct: 71 LNQLAPNSLTRA--DMKVDEDAPKDGPPNTFVDGRNLLFLSFAAVFAKQRGINNIITGVS 128
Query: 127 QADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKE 186
Q+DFSGYPDC++ FIKS+ LNL + ++TPLM+++KA+ +++A DLGVLD+V E
Sbjct: 129 QSDFSGYPDCRDVFIKSLNVTLNLAMDYQFVLITPLMWIDKAETWKLADDLGVLDIVKNE 188
Query: 187 THTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQ 222
T TCY G + G GC +CPAC+LRK G+ EF+
Sbjct: 189 TLTCYNGIK------GNGCGECPACKLRKNGYVEFK 218
>ref|NP_389255.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||A69868 ykvJ protein - Bacillus subtilis
emb|CAB13245.1| (Z99111) similar to hypothetical proteins [Bacillus subtilis]
Length = 219
Score = 180 bits (457), Expect = 9e-45
Identities = 91/225 (40%), Positives = 137/225 (60%), Gaps = 10/225 (4%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE 60
M+++ ++ FSGGQDSTT +WA K F++V V F Y Q+HS E+E A+ IA L +
Sbjct: 1 MKKEKAIVVFSGGQDSTTCLLWALKEFEEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNH 60
Query: 61 IIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN 120
++ + L + +AL +N ++ ++ +LP++FVP RN +F++ A ++GA +
Sbjct: 61 LLDMSLLNQLAPNALTRNDIEI----EVKDGELPSTFVPGRNLVFLSFASILAYQIGARH 116
Query: 121 IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVL 180
I GV + DFSGYPDC+++F+KS +NL I TPLM+LNKA+ +++A +LG L
Sbjct: 117 IITGVCETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLNKAETWKLADELGAL 176
Query: 181 DLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANK 225
D V T TCY G GC +CPAC LR KG+EE+ K
Sbjct: 177 DFVKNNTLTCYNG------IIADGCGECPACHLRSKGYEEYMVMK 215
>ref|NP_231010.1| (NC_002505) exsB protein [Vibrio cholerae]
pir||F82208 exsB protein VC1366 [imported] - Vibrio cholerae (group O1 strain
N16961)
gb|AAF94524.1| (AE004216) exsB protein [Vibrio cholerae]
Length = 231
Score = 179 bits (453), Expect = 3e-44
Identities = 94/223 (42%), Positives = 139/223 (62%), Gaps = 9/223 (4%)
Query: 4 KICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLP-YEII 62
K V+ FSGGQDSTT V A K F +V + FDY Q+H +E+E AQ++A L + ++++
Sbjct: 2 KKAVVVFSGGQDSTTCLVQALKEFDEVHAITFDYGQRHKLEIEVAQQLAKQLGVTAHKVM 61
Query: 63 PLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIA 122
+ L + S+L ++ D+ Q LPNSFVP RN +F+TL YA ++GA+ +
Sbjct: 62 DVSLLNELAISSLTRD--DIPVSHELQANGLPNSFVPGRNILFLTLAGIYAYQIGATTVI 119
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDL 182
GV + DFSGYPDC+++F++++ AL G + + I TPLM+LNKA+ + +A LG LDL
Sbjct: 120 TGVCETDFSGYPDCRDEFVQAMNQALAKGMDLPLMIRTPLMWLNKAETWALADQLGALDL 179
Query: 183 VIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANK 225
V +T TCY G G GC +CPAC LR+ G + + N+
Sbjct: 180 VRHQTLTCYNG------LIGDGCGECPACGLRQAGLKAYLDNR 216
>ref|NP_421954.1| (NC_002696) exsB protein [Caulobacter crescentus CB15]
gb|AAK25122.1| (AE005980) exsB protein [Caulobacter crescentus CB15]
Length = 242
Score = 176 bits (445), Expect = 2e-43
Identities = 89/228 (39%), Positives = 145/228 (63%), Gaps = 8/228 (3%)
Query: 2 EQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQ----KIASLLQL 57
E++ ++ FSGGQDS+ WA +R+ +V VGFDY Q+H++E++ Q ++A+
Sbjct: 5 ERQAALVLFSGGQDSSVCLAWALERYDRVETVGFDYGQRHAIEMQARQAVRREVAARFPQ 64
Query: 58 PYEIIPLDFLENITR-SALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKL 116
E + D + +I A+ +++ + LP++FVP RN +F+T + A +
Sbjct: 65 WAERLGEDHVLDIRSFGAVAQSALTADRAIEMTERGLPSTFVPGRNLVFLTYAAALADRR 124
Query: 117 GASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKD 176
G + G+ + DFSGYPDC+ D + +++ ALNLG + +I TPLM+L KAQ + ++K
Sbjct: 125 GIDALVGGMCETDFSGYPDCRRDTLDAMQAALNLGMDRNFRIETPLMWLTKAQTWGLSKQ 184
Query: 177 LG---VLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEF 221
LG ++ L+++E+HTCYQGER LHA+G+GC CPAC+LR+KG+ E+
Sbjct: 185 LGGEALVSLIVEESHTCYQGERGQLHAWGHGCGTCPACELREKGYVEW 232
>ref|NP_371236.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373922.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_645491.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB41900.1| (AP003131) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56874.1| (AP003360) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB94539.1| (AP004824) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 222
Score = 175 bits (443), Expect = 4e-43
Identities = 89/220 (40%), Positives = 140/220 (63%), Gaps = 12/220 (5%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPLDF 66
++ FSGGQDSTT +AKK FK+V LV F+Y Q+H E+E A++IA + + ++ +
Sbjct: 11 IVVFSGGQDSTTCLFYAKKHFKEVELVTFNYGQRHDTEIEVAKQIAQDQGMKHHVLDMSL 70
Query: 67 LENITRSALFKNSNDLIGHSHAQNKD-LPNSFVPNRNAIFITLLHSYAQKLGASNIALGV 125
L +T +AL ++ ++ N+D +PN+FVP RN +F++ + A ++GA +I GV
Sbjct: 71 LSQLTPNALTQHDMEI-----TNNEDGIPNTFVPARNLLFLSFAGALAYQIGAKHIITGV 125
Query: 126 SQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIK 185
+ DFSGYPDC++ FIKS+ L+L + I TPLM+LNKA+ ++++ +L VLD +
Sbjct: 126 CETDFSGYPDCRDSFIKSMNVTLSLAMDKDFVIHTPLMWLNKAETWKLSDELEVLDYIRT 185
Query: 186 ETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANK 225
+T TCY G G GC +CPAC LR++G ++ +K
Sbjct: 186 KTLTCYNG------IIGDGCGECPACHLRQRGLNQYLESK 219
>gb|AAD54291.1| (AF174387) HI1191 [Haemophilus influenzae]
Length = 227
Score = 169 bits (428), Expect = 2e-41
Identities = 94/221 (42%), Positives = 129/221 (57%), Gaps = 13/221 (5%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKK--VCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPL 64
++ FSGGQDSTT A + K + + F Y Q+H++ELE A+ IA L + +I
Sbjct: 13 IVIFSGGQDSTTCLFQAIAEYGKENIEAITFQYGQRHAIELEKARTIAQDLGIKQTLIDT 72
Query: 65 DFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALG 124
++ IT +AL D H + +LPN+FV RNA+F+ YA+ G +I G
Sbjct: 73 SVMKAITHNALM----DEQAHIEQKENELPNTFVDGRNALFLLYAAIYAKGQGIQDIITG 128
Query: 125 VSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVI 184
V + DFSGYPDC++ FIKS+ LNL + I TPLM+L KAQ +Q+A +LGVLD V
Sbjct: 129 VCETDFSGYPDCRDVFIKSMNVTLNLAMDYQFNIKTPLMYLTKAQTWQLADELGVLDYVQ 188
Query: 185 KETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANK 225
K THTCY+G GC KCP+C LR KG +++ K
Sbjct: 189 KHTHTCYEGIEG-------GCRKCPSCILRNKGLKKYLTQK 222
>ref|NP_655243.1| (NC_003995) ThiI, Thiamine biosynthesis protein (ThiI) [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 220
Score = 169 bits (427), Expect = 3e-41
Identities = 84/221 (38%), Positives = 140/221 (63%), Gaps = 10/221 (4%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE 60
M+++ V+ FSGGQDSTT WA ++F +V V F+Y Q+H +E++CA +IA L + +
Sbjct: 1 MKKEKAVVVFSGGQDSTTCLFWAIEQFAEVEAVTFNYNQRHKLEIDCAVEIAKELGIKHT 60
Query: 61 IIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN 120
++ + L + +AL + ++ +H + +LP++FV RN +F++ A+++GA +
Sbjct: 61 VLDMSLLNQLAPNALTRTDMEI---THEEG-ELPSTFVDGRNLLFLSFAAVLAKQVGARH 116
Query: 121 IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVL 180
I GV + DFSGYPDC++ F+KS+ LNL + I TPLM+++KA+ ++++ +LG
Sbjct: 117 IVTGVCETDFSGYPDCRDVFVKSLNVTLNLSMDYPFVIHTPLMWIDKAETWKLSDELGAF 176
Query: 181 DLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEF 221
+ V ++T TCY G G GC +CPACQLRK G + +
Sbjct: 177 EFVREKTLTCYNG------IIGDGCGECPACQLRKAGLDTY 211
>ref|NP_406625.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC92385.1| (AJ414155) conserved hypothetical protein [Yersinia pestis]
Length = 232
Score = 167 bits (423), Expect = 8e-41
Identities = 86/224 (38%), Positives = 137/224 (60%), Gaps = 7/224 (3%)
Query: 4 KICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLL-QLPYEII 62
K V+ FSGGQDSTT + A +++ +V + FDY Q+H E++ A+++A L ++++
Sbjct: 2 KRAVVVFSGGQDSTTCLIQALQQYDEVHCITFDYGQRHRTEIDVARELALQLGATAHKVL 61
Query: 63 PLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIA 122
+ L + S+L ++S + + + LP++FVP RN +F+TL YA ++ A +
Sbjct: 62 DVGMLNELAVSSLTRDSIPVPSYDANADGALPSTFVPGRNILFLTLASIYAYQVQAQAVI 121
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDL 182
GV + DFSGYPDC+++FIK++ HA++LG I +TPLM+L+KA+ + +A LDL
Sbjct: 122 TGVCETDFSGYPDCRDEFIKALNHAIDLGIGRDIAFITPLMWLDKAETWALADYYQQLDL 181
Query: 183 VIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANKK 226
+ T TCY G + G GC +C AC LR KG + ANK+
Sbjct: 182 IRHHTLTCYNGIK------GDGCGQCAACHLRAKGLASYMANKQ 219
>ref|NP_455052.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_459451.1| (NC_003197) putative (aluminum) resistance protein [Salmonella
typhimurium LT2]
gb|AAL19410.1| (AE008716) putative (aluminum) resistance protein [Salmonella
typhimurium LT2]
emb|CAD08914.1| (AL627266) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 231
Score = 164 bits (416), Expect = 5e-40
Identities = 89/224 (39%), Positives = 136/224 (59%), Gaps = 10/224 (4%)
Query: 4 KICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQL-PYEII 62
K V+ FSGGQDSTT A+ ++ +V V FDY Q+H E++ A+ +A L ++++
Sbjct: 2 KRAVVVFSGGQDSTTCLAQARHQYDEVHCVTFDYGQRHRAEIDVARALALKLGARAHKVL 61
Query: 63 PLDFLENITRSALFKNSNDLIGHSHAQNKD-LPNSFVPNRNAIFITLLHSYAQKLGASNI 121
+ L + S+L ++S + + N D +PN+FVP RN +F+TL YA ++ A +
Sbjct: 62 DVTLLNELAVSSLTRDSIPV--PDYEPNADGIPNTFVPGRNILFLTLAAIYAYQVKAEAV 119
Query: 122 ALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLD 181
GV + DFSGYPDC+++F+K++ HA+NLG I+ TPLM+++KA+ + +A G LD
Sbjct: 120 ITGVCETDFSGYPDCRDEFVKALNHAVNLGMAKDIRFETPLMWIDKAETWALADYWGQLD 179
Query: 182 LVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANK 225
LV +ET TCY G + G GC C AC LR G + +NK
Sbjct: 180 LVREETLTCYNGIK------GDGCGHCAACNLRANGLNHYLSNK 217
>ref|NP_245123.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02270.1| (AE006052) unknown [Pasteurella multocida]
Length = 228
Score = 163 bits (413), Expect = 1e-39
Identities = 91/221 (41%), Positives = 131/221 (59%), Gaps = 14/221 (6%)
Query: 7 VIGFSGGQDSTTLAVWAKKRF--KKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPL 64
V+ FSGGQDSTT A + + + V +V F Y Q+H++ELE A+ IA L + +I
Sbjct: 13 VVIFSGGQDSTTCLFQAIQDYGVENVEVVTFQYGQRHAIELEKAKWIAQDLGVKQTLIDT 72
Query: 65 DFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALG 124
++ IT++AL + H PN+FV RNA+F+ YA+ G +I G
Sbjct: 73 SVIKAITQNALMDEQARIEQHGST-----PNTFVDGRNALFLLYTAIYAKGQGIQDIITG 127
Query: 125 VSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVI 184
V + DFSGYPDC++ FIKS+ LNL + + TPLM+L KAQ +Q+A +LGVLD +
Sbjct: 128 VCETDFSGYPDCRDVFIKSMNVTLNLAMDYQFHLKTPLMYLTKAQTWQLADELGVLDYIR 187
Query: 185 KETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANK 225
+ THTCY G + GC +CP+C LR+KG E+ ++K
Sbjct: 188 QHTHTCYMGVEQ-------GCGECPSCVLREKGLREYLSSK 221
>ref|NP_414978.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P77756|YBAX_ECOLI Hypothetical protein ybaX
pir||D64774 ybaX protein - Escherichia coli
dbj|BAA11648.1| (D82943) YbaX [Escherichia coli]
gb|AAB40200.1| (U82664) similar to H. influenzae HI1191 [Escherichia coli]
gb|AAC73547.1| (AE000150) orf, hypothetical protein [Escherichia coli K12]
Length = 231
Score = 163 bits (412), Expect = 2e-39
Identities = 87/223 (39%), Positives = 136/223 (60%), Gaps = 8/223 (3%)
Query: 4 KICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQL-PYEII 62
K V+ FSGGQDSTT V A +++ +V V FDY Q+H E++ A+++A L ++++
Sbjct: 2 KRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVL 61
Query: 63 PLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIA 122
+ L + S+L ++S + + + +PN+FVP RN +F+TL YA ++ A +
Sbjct: 62 DVTLLNELAVSSLTRDSIPVPDYE-PEADGIPNTFVPGRNILFLTLAAIYAYQVKAEAVI 120
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDL 182
GV + DFSGYPDC+++F+K++ HA++LG I+ TPLM+++KA+ + +A G LDL
Sbjct: 121 TGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPLMWIDKAETWALADYYGKLDL 180
Query: 183 VIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANK 225
V ET TCY G + G GC C AC LR G + A+K
Sbjct: 181 VRNETLTCYNGFK------GDGCGHCAACNLRANGLNHYLADK 217
>ref|NP_273570.1| (NC_003112) aluminum resistance protein, putative [Neisseria
meningitidis MC58]
pir||E81189 aluminum resistance protein, probable NMB0525 [imported] -
Neisseria meningitidis (group B strain MD58)
gb|AAF40955.1| (AE002408) aluminum resistance protein, putative [Neisseria
meningitidis MC58]
Length = 219
Score = 162 bits (410), Expect = 3e-39
Identities = 91/228 (39%), Positives = 136/228 (58%), Gaps = 13/228 (5%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRF--KKVCLVGFDYAQKHSVELECAQKIASLLQLP 58
M + ++ FSGGQDSTT + A + + + V + F Y Q+H+VELE A+ IA L +
Sbjct: 1 MSNQQALVIFSGGQDSTTCLIQAIQTYGRENVQAITFQYGQRHAVELERARWIAQDLGVK 60
Query: 59 YEIIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGA 118
++ L + IT +AL +D A+N +PN+FV RNA+F+ YA+ G
Sbjct: 61 QTVLDLSLMRQITHNALM---DDTAAIETAEN-GVPNTFVDGRNALFLLYAAIYAKGQGI 116
Query: 119 SNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLG 178
+I GV + DFSGYPDC++ F+KS+ LNL + +I TPLM+L KAQ + +A ++G
Sbjct: 117 RHIIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPLMYLTKAQTWALADEMG 176
Query: 179 VLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANKK 226
VLD + ++THTCY G GC +CP+C LR++G E+ +KK
Sbjct: 177 VLDYIREQTHTCYNG-------IVGGCRECPSCILRERGLAEYLESKK 217
>ref|NP_286186.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308525.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54794.1|AE005223_9 (AE005223) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB33921.1| (AP002551) hypothetical protein [Escherichia coli O157:H7]
Length = 231
Score = 162 bits (409), Expect = 3e-39
Identities = 87/223 (39%), Positives = 135/223 (60%), Gaps = 8/223 (3%)
Query: 4 KICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQL-PYEII 62
K V+ FSGGQDSTT V A +++ +V V FDY Q+H E++ A+++A L ++++
Sbjct: 2 KRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVL 61
Query: 63 PLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIA 122
+ L + S+L ++S + + + +PN+FVP RN +F+TL YA ++ A +
Sbjct: 62 DVTLLNELAVSSLTRDSIPVPDYE-PEADGIPNTFVPGRNILFLTLAAIYAYQVKAEAVI 120
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDL 182
GV + DFSGYPDC+++F+K + HA++LG I+ TPLM+++KA+ + +A G LDL
Sbjct: 121 TGVCETDFSGYPDCRDEFVKVLNHAVSLGMAKDIRFETPLMWIDKAETWALADYYGKLDL 180
Query: 183 VIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANK 225
V ET TCY G + G GC C AC LR G + A+K
Sbjct: 181 VRNETLTCYNGIK------GDGCGHCAACNLRANGLNHYLADK 217
>ref|NP_283503.1| (NC_003116) hypothetical protein NMA0702 [Neisseria meningitidis
Z2491]
pir||C81913 hypothetical protein NMA0702 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB83989.1| (AL162754) hypothetical protein NMA0702 [Neisseria meningitidis
Z2491]
Length = 219
Score = 161 bits (407), Expect = 6e-39
Identities = 93/226 (41%), Positives = 135/226 (59%), Gaps = 14/226 (6%)
Query: 3 QKICVIGFSGGQDSTTLAVWAKKRF--KKVCLVGFDYAQKHSVELECAQKIASLLQLPYE 60
QK VI FSGGQDSTT + A + + + V + F Y Q+H+VELE A+ IA L +
Sbjct: 4 QKALVI-FSGGQDSTTCLIQAIQTYGRENVQAITFQYGQRHAVELERARWIAQDLGVKQT 62
Query: 61 IIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN 120
++ L + IT +AL +D A+N +PN+FV RNA+F+ YA+ G +
Sbjct: 63 VLDLSLMRQITHNALM---DDTAAIETAEN-GVPNTFVDGRNALFLLYAAIYAKGQGIRH 118
Query: 121 IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVL 180
I GV + DFSGYPDC++ F+KS+ LNL + +I TPLM+L KAQ + +A ++G L
Sbjct: 119 IIAGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPLMYLTKAQTWALADEMGAL 178
Query: 181 DLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANKK 226
D + ++THTCY G GC +CP+C LR++G E+ +KK
Sbjct: 179 DYIREQTHTCYNG-------IVGGCRECPSCILRERGLAEYLESKK 217
>emb|CAD31298.1| (AL672114) CONSERVED HYPOTHETICAL PROTEIN [Mesorhizobium loti]
Length = 245
Score = 158 bits (399), Expect = 5e-38
Identities = 83/230 (36%), Positives = 136/230 (59%), Gaps = 18/230 (7%)
Query: 10 FSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPY---------- 59
FSGGQDSTT WA + F++V +GFDY Q+H +EL+ + ++ +
Sbjct: 12 FSGGQDSTTCLAWALENFERVETIGFDYGQRHRIELDVRPYLLGRIRTDFPAWRGRLGED 71
Query: 60 EIIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGAS 119
+I + L I+ +AL ++ + + L N+FVP RN +F+ + A ++GA
Sbjct: 72 HMIDMAVLGQISDTALTRDVEVALNAN-----GLTNTFVPGRNLLFLGFAAAIAYRMGAK 126
Query: 120 NIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLG- 178
++ +GVS+ D YPDC++D +K+++ ALNLG T + I TPLM +KAQ + +A LG
Sbjct: 127 HLVIGVSETDRFSYPDCRDDAVKAMQLALNLGMETHLVIHTPLMRRDKAQTWALAGWLGG 186
Query: 179 --VLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANKK 226
++ L+ + +HTCY G+R+ H++G+GC C C LR G+E+F+ K+
Sbjct: 187 EVLVKLICEGSHTCYSGDREHRHSWGFGCGTCIECNLRAAGWEQFRCCKE 236
>ref|NP_106513.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB52299.1| (AP003007) hypothetical protein [Mesorhizobium loti]
Length = 245
Score = 158 bits (399), Expect = 5e-38
Identities = 86/231 (37%), Positives = 136/231 (58%), Gaps = 20/231 (8%)
Query: 10 FSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPY---------- 59
FSGGQDSTT WA + F++V +GFDY Q+H +EL+ + ++ +
Sbjct: 12 FSGGQDSTTCLAWALENFERVETIGFDYGQRHRIELDVRPYLLERIRTDFPAWRGRLGGD 71
Query: 60 EIIPLDFLENITRSALFKNSNDLIGHSHAQNKD-LPNSFVPNRNAIFITLLHSYAQKLGA 118
+I + L I+ +AL + G A N + LPN+FVP RN +F+ + A +L A
Sbjct: 72 HMIDMAVLGQISDTALTR------GVEVALNANGLPNTFVPGRNLLFLGFAAALAYRLSA 125
Query: 119 SNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLG 178
++ +GV++ D YPDC++D +K+I+ ALNLG I TPLM +KAQ + +A LG
Sbjct: 126 KHLVIGVAETDRFSYPDCRDDAVKAIQLALNLGMEKRFIIHTPLMHRDKAQTWALADWLG 185
Query: 179 ---VLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQANKK 226
++ L+ + +HTCY G+R+ H++G+GC C C LR G+E+F++ K+
Sbjct: 186 GEALVKLICEGSHTCYSGDREHRHSWGFGCGTCIECNLRAAGWEQFRSCKE 236
>pir||PC4440 aluminum tolerance protein - Arthrobacter viscosus (fragment)
Length = 172
Score = 150 bits (379), Expect = 1e-35
Identities = 75/174 (43%), Positives = 115/174 (65%), Gaps = 3/174 (1%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE 60
M+++ V+ FSGGQDSTT WA +RF++V V FDY Q+HS+E+ECAQKIA L + +
Sbjct: 2 MKKEKAVVVFSGGQDSTTCLFWAMERFEEVEAVTFDYNQRHSLEIECAQKIAKELGITHH 61
Query: 61 IIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN 120
I+ + L + +AL ++ I ++ +LP++FVP RN +F++ A ++GA +
Sbjct: 62 ILDMSLLNQLAPNALTRSD---IAVEDGEDGELPSTFVPGRNLLFLSFAGVLASQIGAKH 118
Query: 121 IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMA 174
I GV + DFSGYPDC++ FIKS+ LNL + + I TPLM+LNK + +++A
Sbjct: 119 IVTGVCETDFSGYPDCRDVFIKSLNVTLNLSMDQSFVIDTPLMWLNKEETWELA 172
>gb|AAC05081.1| (AF022216) aluminum resistance protein [Arthrobacter viscosus]
Length = 187
Score = 147 bits (371), Expect = 9e-35
Identities = 74/173 (42%), Positives = 112/173 (63%), Gaps = 3/173 (1%)
Query: 2 EQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEI 61
+ I + FSGGQDSTT WA +RF++V V FDY Q+HS+E+ECAQKIA L + + I
Sbjct: 18 QYSILRVVFSGGQDSTTCLFWAMERFEEVEAVTFDYNQRHSLEIECAQKIAKELGITHHI 77
Query: 62 IPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNI 121
+ + L + +AL ++ I ++ +LP++FVP RN +F++ A ++GA +I
Sbjct: 78 LDMSLLNQLAPNALTRSD---IAVEDGEDGELPSTFVPGRNLLFLSFAGVLASQIGAKHI 134
Query: 122 ALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMA 174
GV + DFSGYPDC++ FIKS+ LNL + + I TPLM+LNK + +++A
Sbjct: 135 VTGVCETDFSGYPDCRDVFIKSLNVTLNLSMDQSFVIDTPLMWLNKEETWELA 187
>ref|NP_660795.1| (NC_004061) hypothetical 25.5 kD protein in hupB-cot [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM68006.1| (AE014122) hypothetical 25.5 kD protein in hupB-cot [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 232
Score = 142 bits (359), Expect = 2e-33
Identities = 79/223 (35%), Positives = 128/223 (56%), Gaps = 9/223 (4%)
Query: 3 QKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEI- 61
+KI +I FSGGQDSTT + +K++ + FDY Q H E++ A+ I++ + I
Sbjct: 2 KKILII-FSGGQDSTTCLIHYTNIYKEIYCITFDYNQLHKSEIDSARFISNYFNVKKHIF 60
Query: 62 IPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNI 121
+ L L+N++ S+L ++ + H N LP++FVP RN +F+TL YA ++I
Sbjct: 61 VDLKCLKNLSISSLTDEKISILDN-HPLNFSLPSTFVPGRNILFLTLSSIYAFNHQINSI 119
Query: 122 ALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLD 181
LGV++ DFSGYPDC+ F+K + + +G N I +PL+ L+KA+ + ++
Sbjct: 120 VLGVNEIDFSGYPDCRNAFLKKMNDVVQIGMNCKINFQSPLINLSKAEIWALSDYWNSTQ 179
Query: 182 LVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQAN 224
++ T TCYQG G GC +C +C LR GF ++++N
Sbjct: 180 FILNNTVTCYQG------IQGKGCGQCQSCILRNDGFNKWKSN 216
>ref|NP_394411.1| (NC_002578) transcription regulator (exsB) related protein
[Thermoplasma acidophilum]
emb|CAC12080.1| (AL445066) transcription regulator (exsB) related protein
[Thermoplasma acidophilum]
Length = 238
Score = 131 bits (329), Expect = 6e-30
Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 15/224 (6%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE 60
ME+K V+ SGG DS+T+ +A +V + FDY Q+HS E+ ++++A + +
Sbjct: 1 MERKKAVVLLSGGLDSSTVLAYAISLGYEVHAISFDYGQRHSREMNSSEELAKYYGVDRK 60
Query: 61 IIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN 120
I+ +D L +I +SAL + + +++P ++VP RN IF+++ +YA+ +G+++
Sbjct: 61 IVHVD-LRSIGKSALTDDIEVPSRDLESIPEEIPVTYVPARNTIFLSIAAAYAESIGSTD 119
Query: 121 IALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIK----ILTPLMFLNKAQEFQMAKD 176
I +G + D+SGYPDC+ ++ ++E AL LG+ ++ I PL +L KA +M
Sbjct: 120 IFIGANAIDYSGYPDCRPEYFNAMEKALTLGTEIGLRKGMHINVPLQYLTKADIIRMGLK 179
Query: 177 LGVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
LGV ++T +CY+G K C +C +C LR KGF E
Sbjct: 180 LGV---PYEKTWSCYKGGEK-------ACGECDSCLLRLKGFME 213
>ref|NP_111615.1| (NC_002689) Predicted ATPase (PP-loop superfamily), exsB-related
[Thermoplasma volcanium]
dbj|BAB60262.1| (AP000995) hypothetical protein [Thermoplasma volcanium]
Length = 241
Score = 130 bits (327), Expect = 1e-29
Identities = 75/222 (33%), Positives = 129/222 (57%), Gaps = 17/222 (7%)
Query: 4 KICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIP 63
K V+ SGG DS+T+ +A + +V + FDY Q+H E++ ++ I+ + +I+
Sbjct: 3 KKAVVLLSGGLDSSTVLAYALNKGFEVYAISFDYGQRHLKEMKSSEAISKFYNVDRKIVK 62
Query: 64 LDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIAL 123
+D L +I +SAL N +++P ++VP RN IF+++ +YA+ LG + + +
Sbjct: 63 VD-LRSIGKSALTDNIEVPSRDISTIEEEIPVTYVPARNTIFLSIAAAYAESLGTNEVFI 121
Query: 124 GVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIK----ILTPLMFLNKAQEFQMAKDLGV 179
G + D+SGYPDC+ ++ ++E+AL+LG+ +K I PL +L+KA + LGV
Sbjct: 122 GANAIDYSGYPDCRPEYFNAMENALSLGTKIGLKEKFHINVPLQYLSKADIVK----LGV 177
Query: 180 -LDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
L++ + T +CY+GE + C +C +CQLR KGF E
Sbjct: 178 KLNVPYELTWSCYKGEEE-------ACGECDSCQLRLKGFME 212
>ref|NP_249667.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||E83522 conserved hypothetical protein PA0976 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04365.1|AE004531_2 (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 224
Score = 126 bits (316), Expect = 2e-28
Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 18/224 (8%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQ-LPY 59
M QK VI SGG DS T+ AK + FDY Q+H EL+ A+++A L + +
Sbjct: 1 MNQKKAVILLSGGLDSATVVAMAKADGYACYTMSFDYGQRHRAELQAAERVARQLGVIEH 60
Query: 60 EIIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGAS 119
++I LD L + SAL +++ I + ++ +P ++VP RN +F++L +A+ L A
Sbjct: 61 KVIGLD-LNGMGGSAL---TDESIAVPESPSEGIPVTYVPARNTVFLSLALGWAEVLDAR 116
Query: 120 NIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAI-----KILTPLMFLNKAQEFQMA 174
+I +GV+ D+SGYPDC+ +F+++ E NL + + +I PL +L+KAQ Q
Sbjct: 117 DIFIGVNAVDYSGYPDCRPEFVEAFERMANLATKAGVEGNGFRIQAPLQYLSKAQIIQAG 176
Query: 175 KDLGVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGF 218
GV D + T +CYQ + + G C KC +C+LR GF
Sbjct: 177 VARGV-DYGL--TVSCYQADEQ-----GRACGKCDSCRLRADGF 212
>ref|NP_439347.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44124|YBAX_HAEIN Hypothetical protein HI1191
pir||G64021 hypothetical protein HI1191 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22844.1| (U32798) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 196
Score = 121 bits (304), Expect = 5e-27
Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 7/182 (3%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKK--VCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPL 64
++ FSGGQDSTT A + K + + F Y Q+H++ELE A+ IA L + +I
Sbjct: 13 IVIFSGGQDSTTCLFQAIAEYGKENIEAITFQYGQRHAIELEKARTIAQDLGIKQTLIDT 72
Query: 65 DFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALG 124
++ IT +AL D H + +LPN+FV RNA+F+ YA+ G +I G
Sbjct: 73 SVMKAITHNALM----DEQAHIEQKENELPNTFVDGRNALFLLYAAIYAKGQGIQDIITG 128
Query: 125 VSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKI-LTPLMFLNKAQEFQMAKDLGVLDLV 183
V + DFSGYPDC++ FIKS+ LNL + I I TPLM+L KAQ +Q+A + + L
Sbjct: 129 VCETDFSGYPDCRDVFIKSMNVTLNLAMDYPIPISKTPLMYLTKAQTWQLADEFRRIRLC 188
Query: 184 IK 185
K
Sbjct: 189 TK 190
>emb|CAB50783.1| (X74218) hypothetical protein [Pseudomonas putida]
Length = 224
Score = 120 bits (302), Expect = 9e-27
Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 18/225 (8%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIA-SLLQLPY 59
M +K VI SGG DS T+ AK + FDY Q+H EL A ++A L + +
Sbjct: 1 MTEKRAVILLSGGLDSATVVAMAKAEGYSCYTMSFDYGQRHRAELNAAARVARDLGVVEH 60
Query: 60 EIIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGAS 119
++I L+ L+ I SAL +S D+ A + +P ++VP RN +F++L +A+ L A
Sbjct: 61 KVIGLN-LDGIGGSALTDSSIDV---PEAPGEGIPVTYVPARNTVFLSLALGWAEVLEAR 116
Query: 120 NIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAI-----KILTPLMFLNKAQEFQMA 174
+I +GV+ D+SGYPDC+ +F+++ E NL + + +I PL ++KAQ Q
Sbjct: 117 DIFIGVNAVDYSGYPDCRPEFVEAFERMANLATKAGVEGQGFRIQAPLQNMSKAQIVQAG 176
Query: 175 KDLGVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFE 219
GV D + T +CYQ + G C KC +C+LR GF+
Sbjct: 177 MARGV-DYSL--TVSCYQADDD-----GRACGKCDSCRLRADGFK 213
>ref|NP_281238.1| (NC_002163) putative transcriptional regulatory protein
[Campylobacter jejuni]
pir||C81417 probable transcription regulatory protein Cj0016 [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB72509.1| (AL139074) putative transcriptional regulatory protein
[Campylobacter jejuni]
Length = 224
Score = 116 bits (290), Expect = 2e-25
Identities = 75/223 (33%), Positives = 125/223 (55%), Gaps = 16/223 (7%)
Query: 2 EQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQK-HSVELECAQKIASLLQLPYE 60
++ +C+I SGG DST A AKK ++ + FDY Q+ E EC ++I L++
Sbjct: 3 KKALCII--SGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKEKECFKQICKALKVEKS 60
Query: 61 -IIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGAS 119
I+ + F+++I +AL S D+ + + P ++VP RN IF+++ S A+K
Sbjct: 61 YILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFRNGIFLSIAGSLAEKENCE 120
Query: 120 NIALGVSQADFSGYPDCKEDFIKSIEHALNLGS--NTAIKILTPLMFLNKAQEFQMAKDL 177
+I +GV + D SGYPDC ++FI+ + +N G+ N + I TPL+ LNKA+ ++A
Sbjct: 121 SIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVCIKTPLVRLNKAKIVELALKE 180
Query: 178 GVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
V ++ T +CY+ E + C +C +C LR +GFE+
Sbjct: 181 NV---PLELTWSCYESEDE-------ACGECDSCLLRLRGFEK 213
>ref|NP_213564.1| (NC_000918) trans-regulatory protein ExsB [Aquifex aeolicus]
pir||H70371 trans-regulatory protein ExsB - Aquifex aeolicus
gb|AAC06966.1| (AE000709) trans-regulatory protein ExsB [Aquifex aeolicus]
Length = 218
Score = 115 bits (288), Expect = 4e-25
Identities = 71/217 (32%), Positives = 118/217 (53%), Gaps = 19/217 (8%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQL-PYEIIPLD 65
++ SGG DS TL AK+ FKKV + FDY Q+H VEL+ A+++A L ++ + I+ +
Sbjct: 8 IVLLSGGMDSATLLWLAKREFKKVYAISFDYGQRHKVELKYAKELAKLAEVEDHFIVQVP 67
Query: 66 FLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGV 125
F ++ SAL S ++ + +N+ P + VP RN IF+++ ++A L + I +GV
Sbjct: 68 FYTSLKGSALIDESVEVPKGEYPENEP-PVTTVPMRNLIFLSIASAFADNLEVNYIGIGV 126
Query: 126 SQADFSGYPDCKEDFIKSIEHALNLGSNTAIK------ILTPLMFLNKAQEFQMAKDLGV 179
D + YPDC+ +FI + E A+N GS K + P + ++K + K+LGV
Sbjct: 127 HALD-TPYPDCRPEFITAAEAAINAGSTFVAKKKERMHVYAPFLGMSKRDIALLGKELGV 185
Query: 180 LDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKK 216
++T++CY G C +CP C R++
Sbjct: 186 ---PFEKTYSCYMGTEP-------PCGECPTCIQREE 212
>ref|NP_518859.1| (NC_003295) HYPOTHETICAL SIGNAL PEPTIDE PROTEIN [Ralstonia
solanacearum]
emb|CAD14268.1| (AL646060) HYPOTHETICAL SIGNAL PEPTIDE PROTEIN [Ralstonia
solanacearum]
Length = 224
Score = 109 bits (272), Expect = 3e-23
Identities = 69/223 (30%), Positives = 121/223 (53%), Gaps = 17/223 (7%)
Query: 3 QKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLL-QLPYEI 61
+K ++ SGG DS T+ A + + + Y Q+HS ELE A+K+A+ L + +EI
Sbjct: 2 KKRAIVLLSGGLDSATVLAMANAQGFETYALSMRYGQRHSSELEAAKKVAAALGAVRHEI 61
Query: 62 IPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNI 121
+ LD L SAL ++ ++ + + +P ++VP RN I ++L +A+ +GA ++
Sbjct: 62 VDLD-LRRFGGSALTDDALEV--PTTGVQEGIPITYVPARNTIMLSLALGWAEAVGARDL 118
Query: 122 ALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTA-----IKILTPLMFLNKAQEFQMAKD 176
G + D+SGYPDC+ +++ + E NL + I++ P++ + KA+ Q
Sbjct: 119 FFGANAVDYSGYPDCRPEYVAAYETLANLATKAGVEGDHIRVNAPIIAMTKAEIIQAGAR 178
Query: 177 LGVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFE 219
LGV D + T +CYQ + + G C C +C++R+ GFE
Sbjct: 179 LGV-DYSL--TVSCYQADDE-----GRACGVCDSCRIRRAGFE 213
>ref|NP_442743.1| (NC_000911) ExsB protein [Synechocystis sp. PCC 6803]
pir||S75967 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA10814.1| (D64006) ExsB protein [Synechocystis sp. PCC 6803]
Length = 271
Score = 107 bits (268), Expect = 8e-23
Identities = 69/223 (30%), Positives = 111/223 (48%), Gaps = 18/223 (8%)
Query: 4 KICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEI-I 62
K V+ SGG DS T+A AK+ +V + F+Y Q+H EL A I L +P I
Sbjct: 42 KTAVVLLSGGLDSATVAAIAKREGYRVIALSFNYGQRHDRELRAAADIVQALGIPEHFSI 101
Query: 63 PLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIA 122
LD + + + + + + +P+++VP RN +FI L S A+ GA +
Sbjct: 102 NLDLAQ--WGGSSLTDRQQTLPQTGVEPDIIPSTYVPGRNTVFIALGLSLAEAKGAEAVF 159
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGSNTA-----IKILTPLMFLNKAQEFQMAKDL 177
LG++ D+SGYPDC+ +++ + + L S I++L PL+ L+K A +L
Sbjct: 160 LGINAIDYSGYPDCRPEYLATYQQLAALSSKVGVEGRPIQLLAPLIELSKVDIVHKALEL 219
Query: 178 GVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
GV I +T +CY G + C +C +C+LR + E
Sbjct: 220 GV---PIAQTWSCYAGGEE-------PCGRCDSCRLRDQALIE 252
>ref|NP_299144.1| (NC_002488) transcriptional regulator [Xylella fastidiosa 9a5c]
pir||B82628 transcription regulator XF1858 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF84664.1|AE004007_3 (AE004007) transcriptional regulator [Xylella fastidiosa 9a5c]
Length = 254
Score = 107 bits (268), Expect = 8e-23
Identities = 76/224 (33%), Positives = 118/224 (51%), Gaps = 21/224 (9%)
Query: 4 KICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLP-YEII 62
K V+ SGG DS + A+ + V + Y Q+H+ EL+ A +IA +L + ++++
Sbjct: 26 KKAVVLLSGGMDSAVVTAIAQSQGFMVHALSIRYGQRHTSELDAAVRIARVLNVAAHKVV 85
Query: 63 PLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIA 122
+D L +I SAL D I A K +P ++VP RN I ++L +A+ +GA++I
Sbjct: 86 DVD-LRSIGGSAL----TDDIEIPDAGGKGIPVTYVPARNTIMLSLALGWAEVIGAADIF 140
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGS-----NTAIKILTPLMFLNKAQEFQMAKDL 177
GV+ D+SGYPDC+ FI + E NL + T + + PL FL+KA+
Sbjct: 141 CGVNAVDYSGYPDCRPQFITAFETLANLATKVGVEGTQLHVHAPLQFLSKAEIVHE---- 196
Query: 178 GVLDLV-IKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
GVL V T +CY+ + G C +C AC+LR GF +
Sbjct: 197 GVLHGVDFGLTVSCYRAD-----VDGRACGRCDACKLRAAGFAD 235
>ref|NP_643446.1| (NC_003919) transcriptional regulator [Xanthomonas axonopodis pv.
citri str. 306]
gb|AAM37982.1| (AE011958) transcriptional regulator [Xanthomonas axonopodis pv.
citri str. 306]
Length = 224
Score = 107 bits (267), Expect = 1e-22
Identities = 71/223 (31%), Positives = 120/223 (52%), Gaps = 19/223 (8%)
Query: 4 KICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQ-LPYEII 62
K V+ SGG DS + A+++ V + Y Q+H+ EL+ A ++A+ + ++++
Sbjct: 2 KKAVVLLSGGMDSAAVIALAQEQGFAVYALSVRYGQRHTSELDAAARVAAAQGVIAHKVV 61
Query: 63 PLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIA 122
+D L +I SAL D I A +P ++VP RN I ++L +A+ +GA+++
Sbjct: 62 DVD-LRSIGGSAL----TDDIEVPDAGGDGIPVTYVPARNTIMLSLALGWAEVIGANDLF 116
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAI-----KILTPLMFLNKAQEFQMAKDL 177
GV+ D+SGYPDC+ +F+++ E NL + + ++ PL FL+KA + L
Sbjct: 117 CGVNAVDYSGYPDCRPEFVRAFEVLANLATKAGVEGAGLRVHAPLQFLSKADIVREGVRL 176
Query: 178 GVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
GV D + T +CY+ + A G C C AC+LR GF +
Sbjct: 177 GV-DFGV--TVSCYRAD-----ADGRACGHCDACRLRAAGFAD 211
>ref|NP_638361.1| (NC_003902) transcriptional regulator [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM42285.1| (AE012414) transcriptional regulator [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 224
Score = 105 bits (261), Expect = 5e-22
Identities = 70/223 (31%), Positives = 119/223 (52%), Gaps = 19/223 (8%)
Query: 4 KICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQL-PYEII 62
K V+ SGG DS + A+++ V + Y Q+H+ EL+ A ++A+ + ++++
Sbjct: 2 KKAVVLLSGGMDSAAVIALAQEQGFAVHALSVRYGQRHTSELDAAARVAAAQGVVAHKVV 61
Query: 63 PLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIA 122
+D L +I SAL + I A +P ++VP RN I ++L +A+ +GA+++
Sbjct: 62 DVD-LRSIGGSALTAD----IDVPEAGGAGIPVTYVPARNTIMLSLALGWAEVVGANDLF 116
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAI-----KILTPLMFLNKAQEFQMAKDL 177
GV+ D+SGYPDC+ +F+++ E NL + + ++ PL FL+KA + L
Sbjct: 117 CGVNAVDYSGYPDCRPEFVRAFEVLANLATKAGVEGAGLRVHAPLQFLSKADIVRAGVRL 176
Query: 178 GVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
GV D + T +CY + A G C C AC+LR GF +
Sbjct: 177 GV-DFGL--TVSCYNAD-----ADGRACGHCDACRLRAAGFAD 211
>ref|NP_489135.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB76794.1| (AP003598) ORF_ID:alr5095~hypothetical protein [Nostoc sp. PCC
7120]
Length = 229
Score = 105 bits (261), Expect = 5e-22
Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 19/222 (8%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQL-PYEIIPLD 65
VI SGG DS+T+ AK + + FDY Q+H EL A +A + +++I D
Sbjct: 4 VILLSGGLDSSTILYQAKADGCECYSISFDYQQRHRRELHSAFLVAQTAGIVQHQVINFD 63
Query: 66 FLENITRSALFKNSNDLIGHSH--AQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIAL 123
L SAL ++ DL A ++++P ++VP RN IF++ +YA+ + A + +
Sbjct: 64 -LRLWGGSALTDDNIDLPQERSLDAMSQNIPVTYVPARNTIFLSFALAYAEAIAAQRVYI 122
Query: 124 GVSQADFSGYPDCKEDFIKSIEHALNLGSNTA-----IKILTPLMFLNKAQEFQMAKDLG 178
GV+ D+SGYPDC+ D+I++++ LG+ I I+ PL+ L K + Q+ LG
Sbjct: 123 GVNALDYSGYPDCRPDYIEAMQEVFRLGTKQGREGQPINIVAPLINLKKTEIIQLGNQLG 182
Query: 179 VLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
V T +CY G C C +C+LR F E
Sbjct: 183 V---PWNLTWSCYAGG-------DVACGVCDSCRLRLAAFAE 214
>ref|NP_360707.1| (NC_003103) trans-regulatory protein ExsB [Rickettsia conorii]
gb|AAL03608.1| (AE008658) trans-regulatory protein ExsB [Rickettsia conorii]
Length = 228
Score = 94.4 bits (233), Expect = 9e-19
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 23/229 (10%)
Query: 3 QKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQ----LP 58
+K VI SGG DSTT+ K ++ + F+Y +++S+E+ QKI L++
Sbjct: 2 KKKAVILLSGGPDSTTVLEIVSKTDYEIYALSFNYHRRNSLEV---QKIQGLIKDYNVKQ 58
Query: 59 YEIIPLDFLENITRSALFKNSNDLIGHSHAQN--KDLPNSFVPNRNAIFITLLHSYAQKL 116
+ +I +D L++ SAL ++ D+ + D+P ++VP RN IF++ A+ +
Sbjct: 59 HRVINID-LQSFIGSALTDDNIDVPKFQNTDQLPSDIPVTYVPARNTIFLSYALGVAEVI 117
Query: 117 GASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTA-----IKILTPLMFLNKAQEF 171
GA +I +GV D++ YPDC+ ++IKS E NL + I I PL+ + K Q
Sbjct: 118 GARDIFIGVHTNDYTNYPDCRPEYIKSFEAMANLATRVGVNGEKITIHAPLINMTKEQII 177
Query: 172 QMAKDLGVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
+ +LGV +T +CY G C +C +C R F++
Sbjct: 178 KKGLELGV---DYSKTISCYDPTED-----GLSCGQCLSCIARLDAFKK 218
>ref|NP_142102.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||C71228 hypothetical protein PH0085 - Pyrococcus horikoshii
dbj|BAA29154.1| (AP000001) 269aa long hypothetical protein [Pyrococcus horikoshii]
Length = 269
Score = 90.5 bits (223), Expect = 1e-17
Identities = 58/228 (25%), Positives = 117/228 (50%), Gaps = 12/228 (5%)
Query: 2 EQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDY-AQKHSVELECAQKIASLLQLPYE 60
E K V+ FSGG DST WAK+ + +V ++ +Y +++ SV + A+ + L++P +
Sbjct: 30 EMKRGVVLFSGGLDSTACLYWAKRHYDEVIMLTINYGSREESVMNKVAEFFSKELKIPLK 89
Query: 61 IIPLDFLENITR---SALFKNSNDLIGHSHAQ-----NKDLPNSFVPNRNAIFITLLHSY 112
II ++FL ++ SAL + + + S + + + +VP RN + I++ S
Sbjct: 90 IIRVNFLNEFSKLSGSALVEGNVPRVSASELEVIERAKETARSVWVPARNLVLISIAASL 149
Query: 113 AQKLGASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQ 172
LG +I +G ++ + +PD ++F++ + AL + ++++ PL+ L+K +
Sbjct: 150 LDALGGGDIIVGFNKEEGETFPDNTKEFVERVNKALEYATMNKVRVVAPLIELDKRGIAR 209
Query: 173 MAKDLGVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
+ K+LG + +++CY + C +C +C R +G E
Sbjct: 210 LLKELGA---KYEYSNSCYDPKGFTEDGKPIHCGRCESCVRRHRGLME 254
>ref|NP_069278.1| (NC_000917) succinoglycan biosynthesis regulator (exsB)
[Archaeoglobus fulgidus]
pir||B69305 succinoglycan biosynthesis regulator (exsB) homolog - Archaeoglobus
fulgidus
gb|AAB90792.1| (AE001074) succinoglycan biosynthesis regulator (exsB)
[Archaeoglobus fulgidus]
Length = 239
Score = 89.4 bits (220), Expect = 3e-17
Identities = 57/213 (26%), Positives = 107/213 (49%), Gaps = 12/213 (5%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPLDF 66
V+ SGG DS+TL + +V + F Y QKHS E+E A+K+A ++ + + +
Sbjct: 4 VMLLSGGIDSSTLLYYLLDGGYEVHALTFFYGQKHSKEIESAEKVAKAAKVRHLKVDIST 63
Query: 67 LENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVS 126
+ ++ ++ +++ + VPNRN I +++ YA K+GA +
Sbjct: 64 IHDLISYGALTGEEEVPKAFYSEEVQR-RTIVPNRNMILLSIAAGYAVKIGAKEVHYAAH 122
Query: 127 QADFSGYPDCKEDFIKSIEHALNLGSN-TAIKILTPLMFLNKAQEFQMAKDLGVLDLVIK 185
+D+S YPDC+++F+K+++ A+ L + T +++ P + + KA ++ LGV +
Sbjct: 123 LSDYSIYPDCRKEFVKALDTAVYLANIWTPVEVRAPFVDMTKADIVRLGLKLGV---PYE 179
Query: 186 ETHTCYQGERKILHAYGYGCDKCPACQLRKKGF 218
T +CY+G + C C C R + F
Sbjct: 180 LTWSCYEGGDR-------PCLSCGTCLERTEAF 205
>ref|NP_221055.1| (NC_000963) unknown [Rickettsia prowazekii]
pir||A71676 hypothetical protein RP694 - Rickettsia prowazekii
emb|CAA15131.1| (AJ235272) unknown [Rickettsia prowazekii]
Length = 227
Score = 88.6 bits (218), Expect = 5e-17
Identities = 63/219 (28%), Positives = 112/219 (50%), Gaps = 19/219 (8%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLP-YEIIPLDFLEN 69
SGG DS T+ A + ++ + F+Y Q+++ EL +++ + ++I+ +D L
Sbjct: 9 SGGTDSATVLAIASEMCYEIYAMSFNYGQRNNAELRKVKELIKKYNVKQHKIVDID-LRA 67
Query: 70 ITRSALFKNSNDLIGHSHAQN---KDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVS 126
SAL ++ D + + H N + +P ++VP RN IF++ +A+ +G+ +I +GV
Sbjct: 68 FGGSALTDDNID-VPYYHGINALPEIVPVTYVPARNTIFLSYAVGFAEVIGSQDIFIGVH 126
Query: 127 QADFSGYPDCKEDFIKSIEHALNLGSNTAIK-----ILTPLMFLNKAQEFQMAKDLGVLD 181
+D + YPDC ++I+S E +NL +N ++ I PL+ + K Q + LGV
Sbjct: 127 TSDSANYPDCCPEYIQSFEKMVNLATNMGVQGKKITIHAPLIDMTKEQIIRTGLKLGV-- 184
Query: 182 LVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
K T +CY L C C AC +R F++
Sbjct: 185 -DYKNTISCYSPTEDDL-----SCGNCLACIIRLDAFKK 217
>ref|NP_661432.1| (NC_002932) ExsB protein [Chlorobium tepidum TLS]
gb|AAM71774.1| (AE012828) ExsB protein [Chlorobium tepidum TLS]
Length = 227
Score = 88.2 bits (217), Expect = 6e-17
Identities = 62/216 (28%), Positives = 109/216 (49%), Gaps = 15/216 (6%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKH-SVELECAQKIASLLQLPYEI-IPL 64
V+ SGG DS A + ++ + +Y Q+ ELEC ++I + + +
Sbjct: 4 VLLVSGGMDSLVATALAHREGLELAAMHVNYGQRTWQKELECFRQICVHYGIVDRLEVDA 63
Query: 65 DFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALG 124
FL I S+L ++ +G + D+P S+VP RNA F+++ S+++ +GA+ I +G
Sbjct: 64 MFLSAIGGSSL-TDATIPVGPADLAGTDIPTSYVPFRNANFLSMAVSWSEVIGANRIYIG 122
Query: 125 VSQADFSGYPDCKEDFIKSIEHALNLGS--NTAIKILTPLMFLNKAQEFQMAKDLGVLDL 182
+ D SGYPDC++ F + + G+ T I+I+TPL+ ++KA+ + + LD
Sbjct: 123 AVEEDSSGYPDCRKVFYDAFNQVIEHGTRPETRIEIVTPLIAMSKAEIVRRGME---LDA 179
Query: 183 VIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGF 218
+ +CY+ E G C C +C R + F
Sbjct: 180 PFHFSWSCYKSE-------GKACGVCDSCARRLRAF 208
>ref|NP_539013.1| (NC_003317) SUCCINOGLYCAN BIOSYNTHESIS REGULATOR [Brucella
melitensis]
gb|AAL51277.1| (AE009452) SUCCINOGLYCAN BIOSYNTHESIS REGULATOR [Brucella
melitensis]
Length = 232
Score = 86.3 bits (212), Expect = 2e-16
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 19/213 (8%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPLDFL-EN 69
SGG DS +LA + L+ FDY Q+H EL+ AQ A L +P++II + + +
Sbjct: 8 SGGLDSVSLAHKMAAEHELTGLLSFDYGQRHKKELDFAQACAKRLGVPHQIIDIRTIGAS 67
Query: 70 ITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVSQAD 129
+T SAL + + + H + + + VPNRNAI + + A A +AL V D
Sbjct: 68 LTGSALTDDVD--VPDGHYAEETMKVTVVPNRNAIMLAIAFGVAAAQKADAVALAVHGGD 125
Query: 130 FSGYPDCKEDFIKSIE----HALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIK 185
YPDC+ FI++ + HAL+ +K+L P + KA + D +
Sbjct: 126 HFIYPDCRPGFIEAFQTMQKHALD--GYADVKLLAPYVHATKA---DIVADGAKYRTPFE 180
Query: 186 ETHTCYQGERKILHAYGYGCDKCPACQLRKKGF 218
T +CY+G + C +C C R++ F
Sbjct: 181 ATWSCYKGADR-------HCGRCGTCVERREAF 206
>ref|NP_395803.1| (NC_002608) succinoglycan biosynthesis; ExsB [Halobacterium sp.
NRC-1]
gb|AAG20938.1| (AE005160) succinoglycan biosynthesis; ExsB [Halobacterium sp.
NRC-1]
Length = 229
Score = 86.3 bits (212), Expect = 2e-16
Identities = 64/223 (28%), Positives = 103/223 (45%), Gaps = 15/223 (6%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQK-HSVELECAQ-KIASLLQLP 58
M K V+ SGG DS T A A +V ++ Y Q+ E ECA + A+L
Sbjct: 1 MSAKRAVVLASGGMDSATAAAVAHNAGYEVYMLHTSYGQQTEHKEHECATAQAAALGAAD 60
Query: 59 YEIIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGA 118
+ + D L I S+L + + + ++ ++P S+VP RNA + + SYA+
Sbjct: 61 FLHLTTDHLSKIGASSL-TDDEMAVADADMESDEIPTSYVPFRNANLLAMATSYAEANDC 119
Query: 119 SNIALGVSQADFSGYPDCKEDFIKSIEHALNLGS--NTAIKILTPLMFLNKAQEFQMAKD 176
+ +G DFSGYPDC+ F ++ + + G+ +T I I P + +K + +
Sbjct: 120 EAVFIGAHSEDFSGYPDCQPAFFEAFQQTVAAGTKPDTEISINAPFVDWSKTDIAERGLE 179
Query: 177 LGVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFE 219
LGV + T +CY+ E C C AC R + F+
Sbjct: 180 LGV---PYEHTWSCYRAEAP-------ACGTCDACAFRLQAFQ 212
>ref|NP_341593.1| (NC_002754) Transcription regulator (exsB) related protein
[Sulfolobus solfataricus]
gb|AAK40383.1| (AE006643) Transcription regulator (exsB) related protein
[Sulfolobus solfataricus]
Length = 464
Score = 85.9 bits (211), Expect = 3e-16
Identities = 62/212 (29%), Positives = 100/212 (46%), Gaps = 14/212 (6%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQK-HSVELECAQKIASLLQLPYEIIPLDFLEN 69
SGG DST A + +V L+ F+Y K E E +KIA LQ+P I D +
Sbjct: 249 SGGLDSTVAATKLLREGHEVTLIHFNYHHKAEEKEREAVRKIAEYLQIPLLEINTDLFKI 308
Query: 70 ITRSALFKNSNDLI-GHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVSQA 128
I + L K +++ + + + +VP RN IF ++ + A+ G IA G++
Sbjct: 309 IGHATLIKGGGEIVKDRKGEEGAEFAHEWVPARNLIFFSVSLAIAEAYGYDAIASGINLE 368
Query: 129 DFSGYPDCKEDFIKSIE--HALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKE 186
+ YPD + +FI+ + G N I+IL P+ L K + ++ ++G +
Sbjct: 369 EAGAYPDNEMEFIRMLNKLSPYATGPNKRIEILMPVGNLVKHEIVKLGYEIGA---PLHL 425
Query: 187 THTCYQGERKILHAYGYGCDKCPACQLRKKGF 218
T +CY+G +K C KC C +RK F
Sbjct: 426 TWSCYEGGQK-------HCGKCGPCYMRKMAF 450
>ref|NP_357259.1| (NC_003063) AGR_L_2950p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_533843.1| (NC_003305) succinoglycan biosynthesis regulator [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK90044.1| (AE008348) AGR_L_2950p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44159.1| (AE009264) succinoglycan biosynthesis regulator [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 236
Score = 84.7 bits (208), Expect = 7e-16
Identities = 63/211 (29%), Positives = 98/211 (45%), Gaps = 15/211 (7%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPLDFL-EN 69
SGG DS +LA + + LV FDY Q+H EL+ A A L +P+ +I + + +
Sbjct: 8 SGGLDSVSLAHKIAAEHELLALVSFDYGQRHKKELDFAADCAKRLGVPHHLIDIGTIGAH 67
Query: 70 ITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVSQAD 129
+T SAL + + + H + + ++ VPNRNAI +T+ A A +A+ V D
Sbjct: 68 LTGSALTDDID--VPDGHYAEETMRSTVVPNRNAIMLTIAFGLAAAQQADAVAIAVHGGD 125
Query: 130 FSGYPDCKEDFIKSIE--HALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKET 187
YPDC+ FI S A L + + P + ++KA A G ET
Sbjct: 126 HFIYPDCRPGFIGSFNAMQAHALEGYADVTLFAPYVTVSKAAIVTDAVKYGT---PFGET 182
Query: 188 HTCYQGERKILHAYGYGCDKCPACQLRKKGF 218
+CY+G + C +C C R++ F
Sbjct: 183 WSCYKGGLR-------HCGRCGTCVERREAF 206
>ref|NP_378319.1| (NC_003106) 460aa long hypothetical succinoglycan biosynthesis
regulator [Sulfolobus tokodaii]
dbj|BAB67428.1| (AP000989) 460aa long hypothetical succinoglycan biosynthesis
regulator [Sulfolobus tokodaii]
Length = 460
Score = 83.6 bits (205), Expect = 2e-15
Identities = 60/220 (27%), Positives = 106/220 (47%), Gaps = 15/220 (6%)
Query: 3 QKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQK-HSVELECAQKIASLLQLPYEI 61
+K+ VI SGG DST A + ++ ++ L+ F+Y K E E +KIA LQ+P
Sbjct: 239 KKVLVIA-SGGLDSTVAATYLLRQGYEITLLHFNYHHKAEEREREAVKKIAEYLQVPLIE 297
Query: 62 IPLDFLENITRSALFKNSNDLI-GHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASN 120
I D + I + L K +++ + + + +VP RN IF ++ + A+ G
Sbjct: 298 IDTDLFKIIGHTTLLKGGGEIVKDRLGEEGAEFAHEWVPARNLIFYSVALALAEAYGYDA 357
Query: 121 IALGVSQADFSGYPDCKEDFIKSIE--HALNLGSNTAIKILTPLMFLNKAQEFQMAKDLG 178
IA G++ + YPD + +F++ G N ++++ P+ L K + ++ ++G
Sbjct: 358 IASGINLEEAGAYPDNEMEFVRLFAKLSPYATGPNKKVEVMMPVGNLVKHEIVKLGVEIG 417
Query: 179 VLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGF 218
+ T +CY+G +K C KC C +RK F
Sbjct: 418 A---PLHLTWSCYEGGQK-------HCGKCGPCYMRKMAF 447
>ref|NP_106396.1| (NC_002678) succinoglycan biosynthesis regulator (exsB)
[Mesorhizobium loti]
dbj|BAB52182.1| (AP003007) succinoglycan biosynthesis regulator; ExsB
[Mesorhizobium loti]
Length = 232
Score = 82.8 bits (203), Expect = 3e-15
Identities = 61/212 (28%), Positives = 97/212 (44%), Gaps = 15/212 (7%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPL-DFLEN 69
SGG DS +LA K + L+ FDY Q+H EL A A L +P++I+ + D N
Sbjct: 8 SGGLDSVSLAHKVATEQKLIGLLSFDYGQRHKKELGFAAICAKRLAVPHQIVDIRDVGRN 67
Query: 70 ITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVSQAD 129
++ SAL N + + H + + VPNRNAI + + A A +A V D
Sbjct: 68 LSGSALTDNVD--VPDGHYAEDSMRITVVPNRNAIMLAIAFGVAAAKKADAVATAVHGGD 125
Query: 130 FSGYPDCKEDFIKSIEHALN--LGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKET 187
YPDC+ FI + + N L I++ P + ++KA + + + T
Sbjct: 126 HFIYPDCRPAFIDAFQTMQNHALAGYADIRLYAPYVNMSKA---DIVSEGAKYATPFEAT 182
Query: 188 HTCYQGERKILHAYGYGCDKCPACQLRKKGFE 219
+CY+G + C +C C R++ F+
Sbjct: 183 WSCYKGGAR-------HCGRCGTCVERREAFD 207
>ref|NP_577777.1| (NC_003413) succinoglycan biosynthesis regulator; (exsB)
[Pyrococcus furiosus DSM 3638]
gb|AAL80172.1| (AE010131) succinoglycan biosynthesis regulator; (exsB) [Pyrococcus
furiosus DSM 3638]
Length = 240
Score = 82.4 bits (202), Expect = 3e-15
Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 12/223 (5%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDY-AQKHSVELECAQKIASLLQLPYEIIPLD 65
V+ FSGG DST WAKK++ +V ++ +Y + + V + A+ + L + +I+ LD
Sbjct: 6 VVLFSGGLDSTACLYWAKKQYDEVIMLTVNYGSNEERVTNKVAEYFSKELDVRLKIVKLD 65
Query: 66 FLENITR---SALFKNSNDLIGHSHAQNKDLPNS-----FVPNRNAIFITLLHSYAQKLG 117
FL+ + S+L + ++ + + ++P RN + I++ S LG
Sbjct: 66 FLKEFSEIRGSSLVGGEVPRVTAEELEDIEKASETARSVWIPARNLVLISVAASLLDALG 125
Query: 118 ASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDL 177
+I +G + + + +PD +F++ + AL + +K++ PL+ L+K +AK L
Sbjct: 126 GGDIIVGFNAEEATTFPDNSREFVEKLNEALRFATLNPVKVVAPLIDLDKR---GIAKLL 182
Query: 178 GVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
L+ + +++CY + C +C +C R KG E
Sbjct: 183 KELNAKYEYSNSCYNPKGFTEDGRPIHCGECESCVRRHKGLIE 225
>emb|CAD31242.1| (AL672115) HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti]
Length = 232
Score = 82.4 bits (202), Expect = 3e-15
Identities = 61/212 (28%), Positives = 97/212 (44%), Gaps = 15/212 (7%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPL-DFLEN 69
SGG DS +LA K + L+ FDY Q+H EL A A L +P++I+ + D N
Sbjct: 8 SGGLDSVSLAHKVATEQKLIGLLSFDYGQRHKKELGFAAICAKRLGVPHQIVDIRDVGRN 67
Query: 70 ITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVSQAD 129
++ SAL N + + H + + VPNRNAI + + A A +A V D
Sbjct: 68 LSGSALTDNVD--VPDGHYAEDSMRITVVPNRNAIMLAIAFGVAAAQKADAVATAVHGGD 125
Query: 130 FSGYPDCKEDFIKSIEHALN--LGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKET 187
YPDC+ FI + + N L I++ P + ++KA + + + T
Sbjct: 126 HFIYPDCRPAFIDAFQTMQNHALAGYADIRLYAPYVNMSKA---DIVSEGAKYATPFEAT 182
Query: 188 HTCYQGERKILHAYGYGCDKCPACQLRKKGFE 219
+CY+G + C +C C R++ F+
Sbjct: 183 WSCYKGGAR-------HCGRCGTCVERREAFD 207
>ref|NP_125784.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||H75195 hypothetical protein PAB2286 - Pyrococcus abyssi (strain Orsay)
emb|CAB49015.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
Length = 239
Score = 80.9 bits (198), Expect = 1e-14
Identities = 56/223 (25%), Positives = 108/223 (48%), Gaps = 12/223 (5%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDY-AQKHSVELECAQKIASLLQLPYEIIPLD 65
V+ FSGG DST WA K + +V ++ +Y +Q+ V + A+ + L +P +I+ +D
Sbjct: 5 VVLFSGGLDSTASLYWALKHYDEVIMLTINYGSQEERVTNKVAEFFSRELNVPLKIVKID 64
Query: 66 FLENITRSALFKNSNDLIGHSHAQN-------KDLPNS-FVPNRNAIFITLLHSYAQKLG 117
FL ++ A K + A+ K+ S ++P RN + I + S LG
Sbjct: 65 FLHEFSKIAGSKLVEGNVPEVTARELEDFEKAKETARSVWIPARNFVLIGVAASLLDALG 124
Query: 118 ASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDL 177
+I +G ++ + +PD ++F+ I AL + ++++ PL+ L+K ++ K+
Sbjct: 125 GGDIIVGFNKEEGETFPDNTKEFVDRINSALKYATMNEVRVVAPLIELDKKGIARLLKE- 183
Query: 178 GVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
L+ + +++CY + C +C +C R +G E
Sbjct: 184 --LNAKYEYSNSCYNPQGFTEDGKPIHCGRCESCVRRHRGLIE 224
>ref|NP_248349.1| (NC_000909) ExsB [Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
pir||B64468 hypothetical protein homolog MJ1347 - Methanococcus jannaschii
gb|AAB99356.1| (U67574) ExsB [Methanococcus jannaschii] [Methanocaldococcus
jannaschii]
Length = 235
Score = 80.1 bits (196), Expect = 2e-14
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 22/221 (9%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSV-ELECAQKIASLLQLPYEIIPLDFLEN 69
SGG DST + + AK +V + F+Y Q+ + E+ A+KI +L + + ++ L F++
Sbjct: 11 SGGLDSTVVTLIAKDLGYEVTAITFNYGQRAAKREINSAKKICEILGIEHIVVDLPFVKQ 70
Query: 70 ITRSALFKNSNDLIGHSHAQNKDLPNSF-------VPNRNAIFITLLHSYAQKLGASNIA 122
+S+L I + D ++ VP RN I + +A+ L A I
Sbjct: 71 FGKSSLITEKE--IPTLKMEELDSEKAYETMKAVWVPARNVIMFGIASGFAEALDAEKIF 128
Query: 123 LGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQ----EFQMAKDLG 178
+G+++ + +PD +F+++ L G+ +KI PL K + ++ K LG
Sbjct: 129 IGINKEEGVTFPDNTIEFVEAFNKVLEYGTLNKVKIEAPLYDKTKEEIVKLGAELEKKLG 188
Query: 179 VLDLVIKETHTCYQGE-RKILHAYGYGCDKCPACQLRKKGF 218
V V+K +++CY LH C KC +C RK+ F
Sbjct: 189 V--EVLKYSYSCYHDNGEDFLH-----CGKCESCMRRKRAF 222
>ref|NP_437603.1| (NC_003078) hypothetical conserved protein [Sinorhizobium meliloti]
emb|CAC49463.1| (AL603645) hypothetical conserved protein [Sinorhizobium meliloti]
Length = 236
Score = 79.7 bits (195), Expect = 2e-14
Identities = 63/213 (29%), Positives = 99/213 (45%), Gaps = 19/213 (8%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPL-DFLEN 69
SGG DS +LA + L+ FDY Q+H EL+ A A L +P++II + +
Sbjct: 8 SGGLDSVSLAHKVAAEQELSGLLSFDYGQRHRKELDFAAACARRLGVPHQIIDIREIGRR 67
Query: 70 ITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVSQAD 129
+T SAL + + H + + + VPNRNAI + + A A +A V D
Sbjct: 68 LTGSALTDEVD--VPDGHYAEETMKATVVPNRNAIMLAIAFGVAAARKADAVATAVHGGD 125
Query: 130 FSGYPDCKEDFIKSI----EHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIK 185
YPDC+ FI + +HAL+ ++ A + P + ++KA + D D
Sbjct: 126 HFIYPDCRPGFIDAFQAMQDHALDGYADVA--LYAPFVNVSKA---DIVADGARHDTPFA 180
Query: 186 ETHTCYQGERKILHAYGYGCDKCPACQLRKKGF 218
ET +CY+G + C +C C R++ F
Sbjct: 181 ETWSCYKGGAR-------HCGRCGTCVERREAF 206
>ref|NP_632777.1| (NC_003901) conserved protein [Methanosarcina mazei Goe1]
gb|AAM30449.1| (AE013301) conserved protein [Methanosarcina mazei Goe1]
Length = 231
Score = 79.3 bits (194), Expect = 3e-14
Identities = 52/220 (23%), Positives = 102/220 (45%), Gaps = 21/220 (9%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSV-ELECAQKIASLLQLPYEIIPLDFLEN 69
S G DS A + + + FDY Q+ E+E ++K+ + II LD+L
Sbjct: 8 SSGLDSVAALAIAAESLEIEMAITFDYGQRAGQREMEYSEKVCEHFGIEQRIIKLDWLGE 67
Query: 70 ITRSALFKNSNDLIGHSHAQ-NKDLPNS---------FVPNRNAIFITLLHSYAQKLGAS 119
IT ++L ++ S +++ P+ +VPNRN + + + S+A+ G
Sbjct: 68 ITHTSLVNRDEEVPSLSFEDIDENSPSMITEYSAKAVWVPNRNGVMLNIAGSFAESRGCD 127
Query: 120 NIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGV 179
I +G + + +PD D+I+++++A + + +K+L PL + K + + A +
Sbjct: 128 YIVVGFNGEEAGTFPDNSRDYIQAVDNAFSYSTQNGVKVLAPLAEMGKTEIVKKALE--- 184
Query: 180 LDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFE 219
+ ++ + +CY G C KC +C R + F+
Sbjct: 185 AEAPLEYSWSCYHGGE-------IPCGKCESCVRRARAFK 217
>ref|NP_276236.1| (NC_000916) conserved protein [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
pir||D69014 conserved hypothetical protein MTH1108 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85597.1| (AE000881) conserved protein [Methanothermobacter
thermautotrophicus str. Delta H]
gb|AAC12720.1| (AF039105) ORF2R [Methanothermobacter thermautotrophicus]
Length = 222
Score = 75.9 bits (185), Expect = 3e-13
Identities = 51/215 (23%), Positives = 106/215 (48%), Gaps = 18/215 (8%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHS-VELECAQKIASLLQLPYEIIPLDFLEN 69
SGG DS ++ + + FDY Q+ + +ELE A++++ L + + + L +L
Sbjct: 8 SGGMDSAVATALMMDEYE-IHAITFDYGQRSARMELEYARRLSEHLGIEHTTLDLQWLGR 66
Query: 70 ITRSALFKNSNDLIGHSHAQN-----KDLPNSFVPNRNAIFITLLHSYAQKLGASNIALG 124
+ S L D+ S+ + + +VP RN +F ++ S+A+ + A + +G
Sbjct: 67 LGGSVLTAGG-DIPSPSNLDDTVECLETARKVWVPGRNLVFTSIGVSFAEAMDAGAVIVG 125
Query: 125 VSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVI 184
+ +PD E+F+ + L +G+ ++++ P++ + K + + ++G L
Sbjct: 126 WDLEEAETFPDNSEEFLDAFNRLLEIGTLDGVRVVAPVIGMTKREIVEAGHEVG---LPF 182
Query: 185 KETHTCYQGERKILHAYGYGCDKCPACQLRKKGFE 219
+ T++CY G+R +H C C +C R++ FE
Sbjct: 183 ELTYSCYAGDR--VH-----CGVCESCMRRRRAFE 210
>pir||S60183 protein ExsB - Rhizobium meliloti
emb|CAA90569.1| (Z50189) ExsB [Sinorhizobium meliloti]
emb|CAA12530.1| (AJ225561) ExsB protein [Sinorhizobium meliloti]
Length = 234
Score = 74.7 bits (182), Expect = 7e-13
Identities = 60/195 (30%), Positives = 92/195 (46%), Gaps = 12/195 (6%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPL-DFLEN 69
SGG DS +LA + L+ FDY Q+H EL+ A A L +P++II + +
Sbjct: 8 SGGLDSVSLAHKVAAEQELSGLLSFDYGQRHRKELDFAAACARRLGVPHQIIDIREIGRR 67
Query: 70 ITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVSQAD 129
+T SAL + + H + + + VPNRNAI + + A A +A V D
Sbjct: 68 LTGSALTDEVD--VPDGHYAEETMKATVVPNRNAIMLAIAFGVAAARKADAVATAVHGGD 125
Query: 130 FSGYPDCKEDFIKSI----EHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIK 185
YPDC+ FI + +HAL+ ++ A + P + ++KA + D D
Sbjct: 126 HFIYPDCRPGFIDAFQAMQDHALDGYADVA--LYAPFVNVSKA---DIVADGARHDTPFA 180
Query: 186 ETHTCYQGERKILHA 200
ET +CY+G I A
Sbjct: 181 ETWSCYKGGAAIAGA 195
>ref|NP_619065.1| (NC_003552) succinoglycan biosynthesis regulator [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07545.1| (AE011131) succinoglycan biosynthesis regulator [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 231
Score = 70.9 bits (172), Expect = 1e-11
Identities = 47/220 (21%), Positives = 99/220 (44%), Gaps = 21/220 (9%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSV-ELECAQKIASLLQLPYEIIPLDFLEN 69
S G DS A + + + FDY Q+ E+E ++K+ + + +I LD+L
Sbjct: 8 SSGLDSVAALAIAAESLEIEMAITFDYGQRAGQREIEYSRKVCEHYGIEHIVIKLDWLAG 67
Query: 70 ITRSALFKNSNDLIGHSHAQNKDLPNS----------FVPNRNAIFITLLHSYAQKLGAS 119
IT ++L D+ S + + +VPNRN + + + S+A+
Sbjct: 68 ITNTSLVNRGEDVPALSFEDIDEAAPAAITEASAKAVWVPNRNGVMLNIAGSFAESRDCD 127
Query: 120 NIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGV 179
+ +G + + +PD +++++++A + + +++L PL+ L K + + A +
Sbjct: 128 YLVVGFNGEEAGTFPDNSMAYVEAMDNAFSYSTQNGVRVLAPLIELGKTEIVKKALE--- 184
Query: 180 LDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFE 219
+ ++ + +CY GE C C +C R + F+
Sbjct: 185 VKAPLEYSWSCYHGEET-------PCGGCESCVRRARAFK 217
>ref|NP_614348.1| (NC_003551) Predicted PP-loop superfamily ATPase [Methanopyrus
kandleri AV19]
gb|AAM02278.1| (AE010395) Predicted PP-loop superfamily ATPase [Methanopyrus
kandleri AV19]
Length = 229
Score = 53.9 bits (128), Expect = 1e-06
Identities = 51/224 (22%), Positives = 102/224 (44%), Gaps = 22/224 (9%)
Query: 7 VIGFSGGQDSTTLAVWAKKRF--KKVCLVGFDYAQKHS-VELECAQKIASLLQLPYEIIP 63
V+ SGG DS+ +A WA + + +CL DY Q+++ E A++IA + +E +
Sbjct: 5 VVLCSGGLDSSVIAKWAVEELGGRVICLF-VDYGQRNAPFERRAAERIAEAVGAEFETVG 63
Query: 64 LDFLENITR-SALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGAS--- 119
+L + + +F A +DL +++P RN + + + L
Sbjct: 64 TFWLRRLCPDNPMFAGRLP----REAGTEDLSANWLPARNWNLLGVAAALCDHLYLEGED 119
Query: 120 ---NIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKD 176
+I G++ + +PD ++F ++ AL G + ++ +PL L K ++ +
Sbjct: 120 DEFHIVWGINAEEAERFPDNTKEFADAVAEALKRGLPSRPRLHSPLAELYKPGIVRLGSE 179
Query: 177 LGV-LDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFE 219
LG ++L + + ++ + + C +C AC RK+ FE
Sbjct: 180 LGAPMELSVSCYNPIWEDDTPV------HCGECEACYHRKRAFE 217
>ref|NP_106938.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB52724.1| (AP003009) hypothetical protein [Mesorhizobium loti]
Length = 198
Score = 51.6 bits (122), Expect = 7e-06
Identities = 55/215 (25%), Positives = 95/215 (43%), Gaps = 32/215 (14%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHS-VELECAQKIASLLQLPYEIIPLDFLEN 69
SGG DS ++A W + V L DY QK + E++ A +A LL + +E+I +D
Sbjct: 8 SGGMDSVSIAWWLR---PDVALT-IDYGQKPAEAEIDAAGHVAQLLGISHEVIRVDC--- 60
Query: 70 ITRSALFKNSNDLIGHSHAQNKDLP-NSFVPNRNAIFITLLHSYAQKLGASNIALGVSQA 128
S+L S D+ G A + P + + P RN + +TL A + G S + +G
Sbjct: 61 ---SSL--GSGDMAG--TAPDAAAPVSEWWPFRNQLLVTLAGMAAVRHGVSRLLIGALAT 113
Query: 129 DFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKETH 188
D + D + +F++ + + I + P + L+ ++ + G+ + H
Sbjct: 114 D-GAHADGRPEFVERASQLMAM-QEGGIVVEAPAIELDAV---ELVRRSGIDQGTLAWAH 168
Query: 189 TCYQGERKILHAYGYGCDKCPACQLRKKGFEEFQA 223
+C+ G Y C +C C K F +QA
Sbjct: 169 SCHTG--------NYACGRCRGC---TKHFNTWQA 192
>ref|NP_359195.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAL00406.1| (AE008527) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
Length = 190
Score = 50.4 bits (119), Expect = 1e-05
Identities = 24/71 (33%), Positives = 40/71 (55%)
Query: 1 MEQKICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYE 60
M+ + ++ FSGGQDSTT W + ++ V V F Y Q H +E++ ++IA + +
Sbjct: 14 MKHQSALVVFSGGQDSTTCLFWTMQHYETVEAVTFAYGQHHHLEIQITREIAKEQGIRHH 73
Query: 61 IIPLDFLENIT 71
I+ + L IT
Sbjct: 74 ILDMSLLGQIT 84
>ref|NP_559745.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL63927.1| (AE009855) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 269
Score = 49.3 bits (116), Expect = 3e-05
Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 46/240 (19%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQ-----------LPY 59
SGG DST KR V + F Y QK VE+E AQ + L + +
Sbjct: 14 SGGPDSTCYTALWLKRGCDVHALSFLYGQKAVVEVERAQLLLRRLDGIAAERGWGRVVEH 73
Query: 60 EIIPLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLG-- 117
++ L L + R + + + S+ P VP RN + + +YA +G
Sbjct: 74 RVVDLSSLGELWRGTQLTDPSVSVEQSYT-----PTVVVPIRNVVMAAVATAYAYTVGRN 128
Query: 118 ---ASNIALGVSQADFSG--------YPDCKEDFIKSIEHALNL---GSNTAIKILTPLM 163
+ + LG D YPDC + +++++ A + ++I TP
Sbjct: 129 AGAKTYVILGSHYDDIKPREDTWEPLYPDCSPECVEAMQTAFRICHFRGERGVEIWTPSR 188
Query: 164 -FLNKAQEFQMA-KDLGVLDLVIKETHTCYQ-GERKILHAYGYGCDKCPACQLRKKGFEE 220
L K+Q +M +++G L I +T +CY+ GE C C +C+ R F E
Sbjct: 189 EGLRKSQLLKMCHQEVGDL---IYDTWSCYKSGEAH--------CGSCESCKNRHAAFIE 237
>ref|NP_342072.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
emb|CAB57755.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
gb|AAK40862.1| (AE006684) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 245
Score = 44.3 bits (103), Expect = 0.001
Identities = 54/217 (24%), Positives = 95/217 (42%), Gaps = 42/217 (19%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVG--FDYAQKHSV-ELECAQKIASLLQLPYEIIP 63
+I +GG DST LA + KK K L G Y + ELE ++++ L +P +II
Sbjct: 6 IIQLTGGIDSTVLAYYLKK--DKYVLHGTFIHYGYPPQIKELELVKELSKKLDIPLKII- 62
Query: 64 LDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIAL 123
DF S+ ++ DLP ++I + + + ++ AS A
Sbjct: 63 -DF------------------SSYIKSFDLPPI-----DSIQYIIKYQFVVEILASFSAY 98
Query: 124 GVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLV 183
F G+ K+++ I ++ S K++ P + K++ ++ +LGV
Sbjct: 99 PNLNTMFVGW--LKDEWNNRISLLKDIESLMGFKVIAPFHTMVKSEVIKLGNELGV---D 153
Query: 184 IKETHTCYQGERKILHAYGYGCDKCPACQLRKKGFEE 220
+TH+C + +H C C AC+ R++ FEE
Sbjct: 154 FTKTHSCIVSGK--MH-----CGICMACRSRRRAFEE 183
>ref|NP_377877.1| (NC_003106) 202aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB66986.1| (AP000988) 202aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 202
Score = 42.0 bits (97), Expect = 0.005
Identities = 44/210 (20%), Positives = 91/210 (42%), Gaps = 30/210 (14%)
Query: 11 SGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHS-VELECAQKIASLLQLPYEIIPLDFLEN 69
SGG DS++ A + +R + +Y Q+ + ++L ++ I L + + +
Sbjct: 8 SGGLDSSSAAYYYTRRGLDFDCLFINYGQRSARMQLRSSKIICEKLNKKLLVADIRKIRE 67
Query: 70 ITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVSQAD 129
+ S ++ ++ I H RN + I + ++A++ G I + + D
Sbjct: 68 LFISDIWLKPHEPITH---------------RNLVIIPIAIAFAKEKGYEEIIIASVKED 112
Query: 130 FSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKETHT 189
+ +++ I+ I+ NLG +K+ TP + K+ ++ G LD + T++
Sbjct: 113 C----EYEQNRIEIIKELKNLGEILKVKVSTPFAGMPKSFLLKLGVSAG-LDPSL--TYS 165
Query: 190 CYQGERKILHAYGYGCDKCPACQLRKKGFE 219
C G + Y C +C C RK+ F+
Sbjct: 166 CLLGHK-------YHCGQCSQCLKRKEAFK 188
>ref|NP_577827.1| (NC_003413) NH(3)-dependent NAD+ synthetase; (nadE) [Pyrococcus
furiosus DSM 3638]
gb|AAL80222.1| (AE010136) NH(3)-dependent NAD+ synthetase; (nadE) [Pyrococcus
furiosus DSM 3638]
Length = 257
Score = 42.0 bits (97), Expect = 0.005
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 28/180 (15%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPLDF 66
VIG SGG DS T+A A K K ++G + ++E A+ +A L + Y+II +
Sbjct: 26 VIGISGGVDSATVAYLATKALGKDKILGLIMPYYENKDVEDAKLVAENLGIRYKIINIKP 85
Query: 67 LENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNIALGVS 126
+ + +S+L K L N R + LL+SYA LG + LG S
Sbjct: 86 IVDTIQSSL---------DVALDRKSLGNIMARVR----MVLLYSYANSLG--RLVLGTS 130
Query: 127 QADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKE 186
+ +F+ G++ PL+ + K + +++A+ +GV ++++
Sbjct: 131 N---------RSEFLTGYFTKWGDGASD----YAPLINIYKTEVWEVARIIGVPQSIVEK 177
>ref|NP_142181.1| (NC_000961) NH(3)-dependent NAD(+) synthetase [Pyrococcus
horikoshii]
sp|O57921|NADE_PYRHO Probable NH(3)-dependent NAD(+) synthetase
pir||D71240 probable NH(3)-dependent NAD(+) synthetase - Pyrococcus horikoshii
dbj|BAA29251.1| (AP000001) 257aa long hypothetical NH(3)-dependent NAD(+)
synthetase [Pyrococcus horikoshii]
Length = 257
Score = 41.6 bits (96), Expect = 0.007
Identities = 42/185 (22%), Positives = 82/185 (43%), Gaps = 38/185 (20%)
Query: 7 VIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIIPL-- 64
VIG SGG DS T+A A K K ++G + ++E A+ +A L + Y++I +
Sbjct: 26 VIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGIGYKVINIKP 85
Query: 65 ---DFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKLGASNI 121
F+EN+ + K +++ + + +L+++A LG I
Sbjct: 86 IVDSFVENLELNLDRKGLGNIMSRTR------------------MIMLYAHANSLG--RI 125
Query: 122 ALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLD 181
LG S + +F+ G++ P++ L K + +++AK +GV +
Sbjct: 126 VLGTSN---------RSEFLTGYFTKWGDGASD----YAPIINLYKTEVWEIAKRIGVPE 172
Query: 182 LVIKE 186
++K+
Sbjct: 173 RIVKK 177
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,850,474
Number of Sequences: 1026957
Number of extensions: 5607312
Number of successful extensions: 11783
Number of sequences better than 1.0e-02: 63
Number of HSP's better than 0.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 11632
Number of HSP's gapped (non-prelim): 65
length of query: 226
length of database: 324,149,939
effective HSP length: 117
effective length of query: 109
effective length of database: 203,995,970
effective search space: 22235560730
effective search space used: 22235560730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 95 (41.2 bits)