BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645265|ref|NP_207435.1| hypothetical protein
[Helicobacter pylori 26695]
(75 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207435.1| (NC_000915) hypothetical protein [Helicoba... 157 3e-38
ref|NP_223302.1| (NC_000921) putative [Helicobacter pylori ... 80 4e-15
gb|AAF01799.1|AF183174_1 (AF183174) putative 3-hydroxyacid ... 73 6e-13
ref|NP_223303.1| (NC_000921) putative 3-HYDROXYACID DEHYDRO... 71 2e-12
gb|AAF00501.1|AF183392_1 (AF183392) putative 3-hydroxyacid ... 71 2e-12
gb|AAG37056.1|AF297061_14 (AF297061) unknown [Escherichia c... 43 9e-04
>ref|NP_207435.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64600 hypothetical protein HP0641 - Helicobacter pylori (strain 26695)
gb|AAD07716.1| (AE000578) H. pylori predicted coding region HP0641 [Helicobacter
pylori 26695]
Length = 75
Score = 157 bits (396), Expect = 3e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MITMNAIQWPKKWILGETDNFVSNEVIVKGLDFNKVVQHLPFLFKAQELYSQAEKSGLGE 60
MITMNAIQWPKKWILGETDNFVSNEVIVKGLDFNKVVQHLPFLFKAQELYSQAEKSGLGE
Sbjct: 1 MITMNAIQWPKKWILGETDNFVSNEVIVKGLDFNKVVQHLPFLFKAQELYSQAEKSGLGE 60
Query: 61 LDMAAVYHYLEKGEH 75
LDMAAVYHYLEKGEH
Sbjct: 61 LDMAAVYHYLEKGEH 75
>ref|NP_223302.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71912 hypothetical protein jhp0584 - Helicobacter pylori (strain J99)
gb|AAD06175.1| (AE001491) putative [Helicobacter pylori J99]
Length = 167
Score = 80.5 bits (197), Expect = 4e-15
Identities = 37/40 (92%), Positives = 38/40 (94%)
Query: 1 MITMNAIQWPKKWILGETDNFVSNEVIVKGLDFNKVVQHL 40
M TMNAI+WPKKWI GETDNFVSNEVIVKGLDFNKVVQHL
Sbjct: 1 MTTMNAIRWPKKWIPGETDNFVSNEVIVKGLDFNKVVQHL 40
>gb|AAF01799.1|AF183174_1 (AF183174) putative 3-hydroxyacid dehydrogenase [Helicobacter
pylori]
Length = 78
Score = 73.2 bits (178), Expect = 6e-13
Identities = 33/36 (91%), Positives = 36/36 (99%)
Query: 40 LPFLFKAQELYSQAEKSGLGELDMAAVYHYLEKGEH 75
LPFLF+A+ELYSQAEKSGLGE+DMAAVYHYLEKGEH
Sbjct: 43 LPFLFQAEELYSQAEKSGLGEMDMAAVYHYLEKGEH 78
>ref|NP_223303.1| (NC_000921) putative 3-HYDROXYACID DEHYDROGENASE [Helicobacter
pylori J99]
pir||G71912 probable 3-hydroxyacid dehydrogenase - Helicobacter pylori (strain
J99)
gb|AAD06158.1| (AE001491) putative 3-HYDROXYACID DEHYDROGENASE [Helicobacter
pylori J99]
Length = 285
Score = 71.2 bits (173), Expect = 2e-12
Identities = 33/36 (91%), Positives = 35/36 (96%)
Query: 40 LPFLFKAQELYSQAEKSGLGELDMAAVYHYLEKGEH 75
LPFLF+A+ELYSQAEKSGLG LDMAAVYHYLEKGEH
Sbjct: 250 LPFLFQAEELYSQAEKSGLGGLDMAAVYHYLEKGEH 285
>gb|AAF00501.1|AF183392_1 (AF183392) putative 3-hydroxyacid dehydrogenase [Helicobacter
pylori]
Length = 78
Score = 71.2 bits (173), Expect = 2e-12
Identities = 33/36 (91%), Positives = 35/36 (96%)
Query: 40 LPFLFKAQELYSQAEKSGLGELDMAAVYHYLEKGEH 75
LPFLF+A+ELYSQAEKSGLG LDMAAVYHYLEKGEH
Sbjct: 43 LPFLFQAEELYSQAEKSGLGGLDMAAVYHYLEKGEH 78
>gb|AAG37056.1|AF297061_14 (AF297061) unknown [Escherichia coli]
Length = 126
Score = 42.7 bits (99), Expect = 9e-04
Identities = 21/43 (48%), Positives = 29/43 (66%), Gaps = 2/43 (4%)
Query: 4 MNAIQWPKKWILGETDNFVSNEVIVKGLDFNKVVQHL--PFLF 44
MN I WP+ ++ G TDNFVSNE+I+ GL+ + L PFL+
Sbjct: 1 MNEINWPEGFVPGFTDNFVSNEMIISGLNVKDIWPLLSQPFLW 43
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,834,125
Number of Sequences: 1026957
Number of extensions: 1500203
Number of successful extensions: 3032
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3026
Number of HSP's gapped (non-prelim): 6
length of query: 75
length of database: 324,149,939
effective HSP length: 51
effective length of query: 24
effective length of database: 271,775,132
effective search space: 6522603168
effective search space used: 6522603168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)