BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645271|ref|NP_207441.1| hypothetical protein
[Helicobacter pylori 26695]
         (135 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207441.1|  (NC_000915) hypothetical protein [Helicoba...   274  1e-73
ref|NP_223310.1|  (NC_000921) putative [Helicobacter pylori ...   263  3e-70

>ref|NP_207441.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64600 hypothetical protein HP0647 - Helicobacter pylori (strain 26695)
 gb|AAD07717.1| (AE000578) H. pylori predicted coding region HP0647 [Helicobacter
           pylori 26695]
          Length = 135

 Score =  274 bits (700), Expect = 1e-73
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MGNLTYYAYMYLILFVCLLPVLLMGLVWRLTRPPLKQNIPNKSLSLENLNEQIKNLKSVP 60
           MGNLTYYAYMYLILFVCLLPVLLMGLVWRLTRPPLKQNIPNKSLSLENLNEQIKNLKSVP
Sbjct: 1   MGNLTYYAYMYLILFVCLLPVLLMGLVWRLTRPPLKQNIPNKSLSLENLNEQIKNLKSVP 60

Query: 61  ALEKLKNDFNERFKICPKDKETLWLETIQKLVASEFFELEDAINFGQELENANPNYQQKI 120
           ALEKLKNDFNERFKICPKDKETLWLETIQKLVASEFFELEDAINFGQELENANPNYQQKI
Sbjct: 61  ALEKLKNDFNERFKICPKDKETLWLETIQKLVASEFFELEDAINFGQELENANPNYQQKI 120

Query: 121 ANATGLALKNKKEKG 135
           ANATGLALKNKKEKG
Sbjct: 121 ANATGLALKNKKEKG 135



>ref|NP_223310.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71913 hypothetical protein jhp0592 - Helicobacter pylori (strain J99)
 gb|AAD06165.1| (AE001491) putative [Helicobacter pylori J99]
          Length = 135

 Score =  263 bits (671), Expect = 3e-70
 Identities = 129/135 (95%), Positives = 132/135 (97%)

Query: 1   MGNLTYYAYMYLILFVCLLPVLLMGLVWRLTRPPLKQNIPNKSLSLENLNEQIKNLKSVP 60
           MGNLTYYAYMYLILFVCLLPVLL+GL WRLTRPPLKQNIPNKSLSLENLNEQIKNL+SVP
Sbjct: 1   MGNLTYYAYMYLILFVCLLPVLLVGLAWRLTRPPLKQNIPNKSLSLENLNEQIKNLQSVP 60

Query: 61  ALEKLKNDFNERFKICPKDKETLWLETIQKLVASEFFELEDAINFGQELENANPNYQQKI 120
           ALEKLKN FNERFKICPKDKETLWLETIQ LVASEFFELEDAINFGQELENANPNY+QKI
Sbjct: 61  ALEKLKNRFNERFKICPKDKETLWLETIQNLVASEFFELEDAINFGQELENANPNYRQKI 120

Query: 121 ANATGLALKNKKEKG 135
           ANATGLALKNKKEKG
Sbjct: 121 ANATGLALKNKKEKG 135



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.317    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,809,988
Number of Sequences: 1026957
Number of extensions: 3220184
Number of successful extensions: 11801
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11799
Number of HSP's gapped (non-prelim): 2
length of query: 135
length of database: 324,149,939
effective HSP length: 111
effective length of query: 24
effective length of database: 210,157,712
effective search space: 5043785088
effective search space used: 5043785088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 89 (38.9 bits)