BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645274|ref|NP_207444.1| hypothetical protein
[Helicobacter pylori 26695]
         (196 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207444.1|  (NC_000915) hypothetical protein [Helicoba...   393  e-109
ref|NP_223313.1|  (NC_000921) putative [Helicobacter pylori ...   363  e-100
ref|NP_621780.1|  (NC_003869) Uracil-DNA glycosylase [Thermo...    42  0.004
ref|NP_214164.1|  (NC_000918) N-terminus of phage SPO1 DNA p...    42  0.005
ref|NP_143337.1|  (NC_000961) hypothetical protein [Pyrococc...    41  0.007

>ref|NP_207444.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64601 hypothetical protein HP0650 - Helicobacter pylori (strain 26695)
 gb|AAD07718.1| (AE000578) H. pylori predicted coding region HP0650 [Helicobacter
           pylori 26695]
          Length = 196

 Score =  393 bits (1010), Expect = e-109
 Identities = 196/196 (100%), Positives = 196/196 (100%)

Query: 1   MERLLGETYTNTNLDKPQNKPLNKQVYEGIENCNLCKRHQNSKPVIGLFNPTSKLTFITL 60
           MERLLGETYTNTNLDKPQNKPLNKQVYEGIENCNLCKRHQNSKPVIGLFNPTSKLTFITL
Sbjct: 1   MERLLGETYTNTNLDKPQNKPLNKQVYEGIENCNLCKRHQNSKPVIGLFNPTSKLTFITL 60

Query: 61  TPMLDSQLNFLNNLKAAMLESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINACLFHL 120
           TPMLDSQLNFLNNLKAAMLESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINACLFHL
Sbjct: 61  TPMLDSQLNFLNNLKAAMLESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINACLFHL 120

Query: 121 TWQLDNSASKVIVVFGEILPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKK 180
           TWQLDNSASKVIVVFGEILPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKK
Sbjct: 121 TWQLDNSASKVIVVFGEILPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKK 180

Query: 181 EALAHFKIALQFLNQS 196
           EALAHFKIALQFLNQS
Sbjct: 181 EALAHFKIALQFLNQS 196



>ref|NP_223313.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71914 hypothetical protein jhp0595 - Helicobacter pylori (strain J99)
 gb|AAD06168.1| (AE001491) putative [Helicobacter pylori J99]
          Length = 209

 Score =  363 bits (931), Expect = e-100
 Identities = 181/196 (92%), Positives = 189/196 (96%)

Query: 1   MERLLGETYTNTNLDKPQNKPLNKQVYEGIENCNLCKRHQNSKPVIGLFNPTSKLTFITL 60
           MERLLGETYT+ +L KPQNKPLNKQV+EGIENCNLCKRHQ+SKP+ GLFNPTSKL FITL
Sbjct: 14  MERLLGETYTDISLIKPQNKPLNKQVHEGIENCNLCKRHQHSKPITGLFNPTSKLAFITL 73

Query: 61  TPMLDSQLNFLNNLKAAMLESIIQKVFNCPLKDCSILSLLKCDSNSLNLEEEINACLFHL 120
           TPMLDSQL+FLNNLKAAMLESIIQKVFN PLKDCSILSLLKCDSNSLNLEEEINACL HL
Sbjct: 74  TPMLDSQLHFLNNLKAAMLESIIQKVFNYPLKDCSILSLLKCDSNSLNLEEEINACLPHL 133

Query: 121 TWQLDNSASKVIVVFGEILPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKK 180
           TWQLDNSA KVI+VFGE+LPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKK
Sbjct: 134 TWQLDNSAPKVIIVFGEVLPKRLLNLSKEESFGRIVSLKTKHFLSTHALEDMLKNPTLKK 193

Query: 181 EALAHFKIALQFLNQS 196
           EALAHFKIALQFLNQS
Sbjct: 194 EALAHFKIALQFLNQS 209



>ref|NP_621780.1| (NC_003869) Uracil-DNA glycosylase [Thermoanaerobacter
           tengcongensis]
 gb|AAM23384.1| (AE012981) Uracil-DNA glycosylase [Thermoanaerobacter
           tengcongensis]
          Length = 186

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 42/171 (24%), Positives = 81/171 (46%), Gaps = 8/171 (4%)

Query: 24  KQVYEGIENCNLCKRHQN-SKPVIGLFNPTSKLTFITLTPMLDSQLNFLNNLKAA--MLE 80
           K++Y    +C  C  H+  +  V G  N  +K+ F+   P  D  L     +  A  +L 
Sbjct: 7   KELYLACLHCTKCDLHKTKTNMVFGEGNLRAKVMFVGEGPGRDEDLQGRPFVGRAGQLLN 66

Query: 81  SIIQKVFNCPLKDCSILSLLKC--DSNSLNLEEEINACLFHLTWQLDNSASKVIVVFGEI 138
            +++ V     ++  I +++KC   +N + L+ EI+ACL +L  Q+   A K+IV  G  
Sbjct: 67  KMLEDV-GLKREEVYIANVVKCRPPNNRVPLQSEIDACLPYLRNQVAIIAPKIIVCLGAT 125

Query: 139 LPKRLLNLSKEESF--GRIVSLKTKHFLSTHALEDMLKNPTLKKEALAHFK 187
             K +++   + +   G+    K    ++T+    +L++P   + A+  FK
Sbjct: 126 AAKAIIDKDFKITTMRGQWFERKGVKIIATYHPAAILRDPEKLQPAMEDFK 176



>ref|NP_214164.1| (NC_000918) N-terminus of phage SPO1 DNA polymerase [Aquifex
           aeolicus]
 pir||E70446 N-terminus of phage SPO1 DNA polymerase - Aquifex aeolicus
 gb|AAC07559.1| (AE000751) N-terminus of phage SPO1 DNA polymerase [Aquifex
           aeolicus]
          Length = 195

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 46/185 (24%), Positives = 78/185 (41%), Gaps = 12/185 (6%)

Query: 22  LNKQVYEGIENCNLCKRHQNSKPVI-GLFNPTSKLTFITLTP--MLDSQLNFLNNLKAAM 78
           L K +YE  ++C  C  H++   V+ G  NP S L F+   P    D Q          +
Sbjct: 11  LLKNLYEEWKDCTRCDLHKSRTRVVPGDGNPYSLLVFVGEAPGEEEDRQGKPFVGRAGQL 70

Query: 79  LESIIQKVFNCPLKDCSILSLLKC--DSNSLNLEEEINACLFHLTWQLDNSASKVIVVFG 136
           L  +I++V     +D  I ++ KC    N      E+ AC  +L  +++    KVI   G
Sbjct: 71  LNRLIEEVLGMKREDVYITNVCKCRPPQNRKPTPIEMRACFPYLKKEIEIIQPKVICCLG 130

Query: 137 EILPKRLLNLS------KEESFGRIVSLKTKHFLSTHALEDMLKNPTLKKEALAHFKIAL 190
               + +L  S      + + F    + + K FL+ H    +L+NP  +   +  F+   
Sbjct: 131 ATAGEGILGKSLRITKVRGQVFPYPYNPRIKVFLTYHPAY-VLRNPKEETTIIKDFEKLK 189

Query: 191 QFLNQ 195
           + L Q
Sbjct: 190 ELLTQ 194



>ref|NP_143337.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
 pir||C71022 hypothetical protein PH1472 - Pyrococcus horikoshii
 dbj|BAA30579.1| (AP000006) 197aa long hypothetical protein [Pyrococcus horikoshii]
          Length = 197

 Score = 41.2 bits (95), Expect = 0.007
 Identities = 47/185 (25%), Positives = 78/185 (41%), Gaps = 14/185 (7%)

Query: 17  PQNKPLNKQVYEGIENCNLCKRHQ-NSKPVIGLFNPTSKLTFITLTP-MLDSQLNFLNNL 74
           P  + L K++ E I  C  C   +  + PV G  +  +K+ F+   P   + Q+      
Sbjct: 5   PSKEELMKKLEEKIRKCKKCPLWEVRTNPVPGDGSYDTKIMFVGEAPGYWEDQMGLPFVG 64

Query: 75  KAAMLESIIQKVFNCPLKDCSILSLLKC--DSNSLNLEEEINACLFHLTWQLDNSASKVI 132
           KA  +   + K+      +  I +++KC   +N    EEEI AC  +L  Q+D    KVI
Sbjct: 65  KAGKVLDELLKLIGLKRSEVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIKPKVI 124

Query: 133 VVFGE-----ILPKRLLNLSK-EESFGRIVSLKTK----HFLSTHALEDMLKNPTLKKEA 182
           V  G      I+ K   N+    +  GR+   +T     + +  +     L  P L++E 
Sbjct: 125 VTLGRFSTAYIMKKYGFNVEPISKIHGRVFEARTLFGKIYIVPMYHPAVALYRPQLRREL 184

Query: 183 LAHFK 187
              FK
Sbjct: 185 EEDFK 189



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,114,154
Number of Sequences: 1026957
Number of extensions: 4461725
Number of successful extensions: 10750
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10748
Number of HSP's gapped (non-prelim): 5
length of query: 196
length of database: 324,149,939
effective HSP length: 115
effective length of query: 81
effective length of database: 206,049,884
effective search space: 16690040604
effective search space used: 16690040604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)