BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645278|ref|NP_207448.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(360 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207448.1| (NC_000915) conserved hypothetical protein... 729 0.0
ref|NP_223317.1| (NC_000921) putative [Helicobacter pylori ... 718 0.0
gb|AAF04273.1|AF181880_2 (AF181880) unknown [Helicobacter p... 714 0.0
emb|CAA76032.1| (Y16068) orf (HP0654) [Helicobacter pylori] 473 e-132
ref|NP_282514.1| (NC_002163) hypothetical protein Cj1368 [C... 427 e-119
ref|NP_213448.1| (NC_000918) hypothetical protein [Aquifex ... 286 2e-76
ref|NP_294089.1| (NC_001263) conserved hypothetical protein... 259 3e-68
ref|NP_244278.1| (NC_002570) BH3411~unknown conserved prote... 251 7e-66
ref|NP_069224.1| (NC_000917) conserved hypothetical protein... 246 3e-64
ref|NP_213540.1| (NC_000918) hypothetical protein [Aquifex ... 227 1e-58
ref|NP_069226.1| (NC_000917) conserved hypothetical protein... 218 1e-55
ref|NP_393693.1| (NC_002578) conserved hypothetical protein... 209 4e-53
ref|NP_111898.1| (NC_002689) Uncharacterized conserved prot... 205 6e-52
ref|NP_069632.1| (NC_000917) conserved hypothetical protein... 202 6e-51
ref|NP_614180.1| (NC_003551) Predicted enzyme related to t... 201 8e-51
ref|NP_628712.1| (NC_003888) conserved hypothetical protein... 199 4e-50
ref|NP_281649.1| (NC_002163) hypothetical protein Cj0462 [C... 197 2e-49
ref|NP_559113.1| (NC_003364) conserved hypothetical protein... 195 8e-49
ref|NP_634520.1| (NC_003901) Biotin synthase [Methanosarcin... 194 1e-48
ref|NP_147082.1| (NC_000854) hypothetical protein [Aeropyru... 192 5e-48
ref|NP_111896.1| (NC_002689) Uncharacterized conserved prot... 192 7e-48
ref|NP_616423.1| (NC_003552) conserved hypothetical protein... 191 1e-47
ref|NP_275959.1| (NC_000916) conserved protein [Methanother... 189 3e-47
ref|NP_393695.1| (NC_002578) conserved hypothetical protein... 188 7e-47
ref|NP_559112.1| (NC_003364) conserved hypothetical protein... 188 7e-47
ref|NP_207450.1| (NC_000915) conserved hypothetical protein... 187 1e-46
ref|NP_616424.1| (NC_003552) conserved hypothetical protein... 187 2e-46
ref|NP_219938.1| (NC_000117) Fe-S oxidoreductase [Chlamydia... 185 6e-46
ref|NP_223319.1| (NC_000921) putative [Helicobacter pylori ... 185 6e-46
ref|NP_244009.1| (NC_002570) BH3143~unknown conserved prote... 182 4e-45
ref|NP_634519.1| (NC_003901) Biotin synthase [Methanosarcin... 182 7e-45
ref|NP_248435.1| (NC_000909) conserved hypothetical protein... 182 7e-45
ref|NP_224709.1| (NC_000922) Fe-S oxidoreductase [Chlamydop... 176 3e-43
ref|NP_297084.1| (NC_002620) conserved hypothetical protein... 176 5e-43
ref|NP_293790.1| (NC_001263) conserved hypothetical protein... 175 6e-43
ref|NP_488169.1| (NC_003272) hypothetical protein [Nostoc s... 166 5e-40
ref|NP_215689.1| (NC_000962) hypothetical protein Rv1173 [M... 166 5e-40
ref|NP_302048.1| (NC_002677) conserved hypothetical protein... 165 7e-40
ref|NP_628596.1| (NC_003888) conserved hypothetical protein... 159 6e-38
ref|NP_220286.1| (NC_000117) Fe-S cluster oxidoreduase [Chl... 157 1e-37
ref|NP_225106.1| (NC_000922) Fe-S oxidoreductase [Chlamydop... 156 4e-37
ref|NP_440146.1| (NC_000911) hypothetical protein [Synechoc... 155 7e-37
ref|NP_147081.1| (NC_000854) hypothetical protein [Aeropyru... 154 2e-36
ref|NP_296527.1| (NC_002620) conserved hypothetical protein... 153 3e-36
ref|NP_280642.1| (NC_002607) Vng1938c [Halobacterium sp. NR... 116 4e-25
ref|NP_247771.1| (NC_000909) biotin synthetase, putative (b... 58 1e-07
ref|NP_563376.1| (NC_003366) probable biotin synthetase [Cl... 51 2e-05
ref|NP_623465.1| (NC_003869) Biotin synthase and related en... 49 7e-05
ref|NP_348258.1| (NC_003030) Biotin synthase family enzyme ... 46 8e-04
ref|NP_229072.1| (NC_000853) thiH protein, putative [Thermo... 44 0.002
ref|NP_614181.1| (NC_003551) Predicted enzyme related to t... 44 0.004
ref|NP_229074.1| (NC_000853) biotin synthetase, putative [T... 43 0.005
>ref|NP_207448.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64601 conserved hypothetical protein HP0654 - Helicobacter pylori
(strain 26695)
gb|AAD07719.1| (AE000579) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 360
Score = 729 bits (1881), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MDFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICA 60
MDFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICA
Sbjct: 1 MDFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICA 60
Query: 61 DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE 120
DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE
Sbjct: 61 DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE 120
Query: 121 TIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRK 180
TIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRK
Sbjct: 121 TIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRK 180
Query: 181 ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENK 240
ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENK
Sbjct: 181 ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENK 240
Query: 241 EGGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLAL 300
EGGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLAL
Sbjct: 241 EGGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLAL 300
Query: 301 VAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
VAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF
Sbjct: 301 VAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
>ref|NP_223317.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71910 hypothetical protein jhp0599 - Helicobacter pylori (strain J99)
gb|AAD06180.1| (AE001492) putative [Helicobacter pylori J99]
Length = 360
Score = 718 bits (1853), Expect = 0.0
Identities = 354/360 (98%), Positives = 356/360 (98%)
Query: 1 MDFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICA 60
MDFLEKVLDNQVTESKELVRLYDYDLYTLGE ADRMRQNMHQKIVYFNVNRHLNPSNICA
Sbjct: 1 MDFLEKVLDNQVTESKELVRLYDYDLYTLGEAADRMRQNMHQKIVYFNVNRHLNPSNICA 60
Query: 61 DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE 120
DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE
Sbjct: 61 DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE 120
Query: 121 TIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRK 180
TIKQEMPNLHLKAMTAAEVHFLS KFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRK
Sbjct: 121 TIKQEMPNLHLKAMTAAEVHFLSAKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRK 180
Query: 181 ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENK 240
ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKN+VENK
Sbjct: 181 ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNKVENK 240
Query: 241 EGGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLAL 300
EGGFNAFIPLLYQKENNYL V KSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLAL
Sbjct: 241 EGGFNAFIPLLYQKENNYLKVGKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLAL 300
Query: 301 VAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
VAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKD+GFVAVERDSLYNFIQKF
Sbjct: 301 VAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDSGFVAVERDSLYNFIQKF 360
>gb|AAF04273.1|AF181880_2 (AF181880) unknown [Helicobacter pylori]
Length = 360
Score = 714 bits (1842), Expect = 0.0
Identities = 350/360 (97%), Positives = 355/360 (98%)
Query: 1 MDFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICA 60
MDFLEKVLDNQVTESKELV+LYDYDLYTLGE AD MRQNMHQKIVYFNVNRHLNPSNICA
Sbjct: 1 MDFLEKVLDNQVTESKELVKLYDYDLYTLGEAADHMRQNMHQKIVYFNVNRHLNPSNICA 60
Query: 61 DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE 120
DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE
Sbjct: 61 DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE 120
Query: 121 TIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRK 180
TIKQEMPNLHLKAMTAAEVHFLS KFNKPFELVLEDMLKAGVDSMPGGGAEIFDEE+RRK
Sbjct: 121 TIKQEMPNLHLKAMTAAEVHFLSTKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEVRRK 180
Query: 181 ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENK 240
IC GKVGSSRWLEIHAYWHKLGKMSNATMLFGHIE+KIHRIDHMLRIKKIQSPKN+VENK
Sbjct: 181 ICKGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIEDKIHRIDHMLRIKKIQSPKNKVENK 240
Query: 241 EGGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLAL 300
EGGFNAFIPLLYQKENNYL VEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLAL
Sbjct: 241 EGGFNAFIPLLYQKENNYLKVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLAL 300
Query: 301 VAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
VAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDL+FKIKDAGFVAVERDSLYNFIQKF
Sbjct: 301 VAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLVFKIKDAGFVAVERDSLYNFIQKF 360
>emb|CAA76032.1| (Y16068) orf (HP0654) [Helicobacter pylori]
Length = 232
Score = 473 bits (1217), Expect = e-132
Identities = 228/232 (98%), Positives = 229/232 (98%)
Query: 1 MDFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICA 60
MDFLEKVLDNQVTESKELV+LYDYDLYTLGE AD MRQNMHQKIVYFNVNRHLNPSNICA
Sbjct: 1 MDFLEKVLDNQVTESKELVKLYDYDLYTLGEAADHMRQNMHQKIVYFNVNRHLNPSNICA 60
Query: 61 DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE 120
DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE
Sbjct: 61 DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE 120
Query: 121 TIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRK 180
TIKQEMPNLHLKAMTAAEVHFLSVKFNKPFE VLEDMLKAGVDSMPGGGAEIFDEEIRRK
Sbjct: 121 TIKQEMPNLHLKAMTAAEVHFLSVKFNKPFERVLEDMLKAGVDSMPGGGAEIFDEEIRRK 180
Query: 181 ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQS 232
ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQS
Sbjct: 181 ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQS 232
>ref|NP_282514.1| (NC_002163) hypothetical protein Cj1368 [Campylobacter jejuni]
pir||E81281 hypothetical protein Cj1368 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73795.1| (AL139078) hypothetical protein Cj1368 [Campylobacter jejuni]
Length = 354
Score = 427 bits (1098), Expect = e-119
Identities = 206/359 (57%), Positives = 272/359 (75%), Gaps = 7/359 (1%)
Query: 2 DFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICAD 61
+ + K+ + + +E L+D DL+TLG+ A + R +H K VYFN+NRH+NP+NICAD
Sbjct: 3 NLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGKKVYFNINRHINPTNICAD 62
Query: 62 ACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFET 121
CKFCAFSAHRKNPNPY M+ EEI++ V + + KEVHIVSAHN + +++WYL++F+
Sbjct: 63 TCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVHIVSAHNKDTTWQWYLEIFKM 122
Query: 122 IKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKI 181
IK++ PNLH+KAMTAAE+ FL +F +E V+E ML+ GVDSMPGGGAEIFDEE+R+KI
Sbjct: 123 IKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLEYGVDSMPGGGAEIFDEEVRKKI 182
Query: 182 CNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKE 241
C+GKV S WL+IH WH+ K SNATMLFGHIE + HRIDHMLR++ +Q ++
Sbjct: 183 CHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEERHHRIDHMLRLRDLQ-------DQT 235
Query: 242 GGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALV 301
GGFNAFIPL++Q++ +++ +K + EILKTIAISR++L+NI +IKAYWAT+ LNLA+V
Sbjct: 236 GGFNAFIPLVWQRDKSFIQTDKIMDSEEILKTIAISRLVLDNIKNIKAYWATMTLNLAMV 295
Query: 302 AQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
AQEFGANDLDGTIE ESIQSA GAKS G + I IK + + VERDSLYN ++ +
Sbjct: 296 AQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMIKTSNLIPVERDSLYNELKTY 354
>ref|NP_213448.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||D70357 conserved hypothetical protein aq_648 - Aquifex aeolicus
gb|AAC06853.1| (AE000700) hypothetical protein [Aquifex aeolicus]
Length = 371
Score = 286 bits (733), Expect = 2e-76
Identities = 152/357 (42%), Positives = 220/357 (61%), Gaps = 9/357 (2%)
Query: 5 EKVLDNQVTESKELVRLY-DYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADAC 63
+KVL+ + +E + LY +L LG +A+ + + + YF VNR +NP+N+C C
Sbjct: 22 DKVLNEKRINQEEALYLYRSNELTALGLLAEYINRKKNGMYAYFIVNRQINPTNVCMYQC 81
Query: 64 KFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIK 123
FCAF + +P YEMS+EEIL+KV+ Y G +EVHIV + Y+ Y+ + IK
Sbjct: 82 DFCAFGVKKSDPKAYEMSMEEILKKVEELYLMGGREVHIVGGIPSYWDYDKYVSIVREIK 141
Query: 124 QEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICN 183
+ P + +KA TA E+H ++ K +E VL ++ +AG+D++PGGGAEIF E +R+ I
Sbjct: 142 KRFPEIIIKAWTAVEIHHMAKISGKSYEEVLSELKEAGLDALPGGGAEIFSERVRKIIAP 201
Query: 184 GKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGG 243
K + +LE+H HKLG SNATML+GH+E R++HM ++++Q ++ GG
Sbjct: 202 YKANAEEYLEVHRVAHKLGIPSNATMLYGHVETLEERVEHMEMLRRLQ-------DETGG 254
Query: 244 FNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQ 303
F FIPL Y E L ++ S+++ LKTIAISRI L+N HIKAYW TLG +A VA
Sbjct: 255 FQVFIPLAYWPEGTRLGGTRT-SSVDDLKTIAISRIYLDNFDHIKAYWVTLGEKVAQVAL 313
Query: 304 EFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
FGA+DLDGTI+ E I AAG KS +G + L+ IK AG ERD+ Y ++ +
Sbjct: 314 NFGADDLDGTIQEEKIVHAAGTKSAYGHSVDKLVNLIKKAGKTPAERDTFYRVVRVY 370
>ref|NP_294089.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||A75527 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09948.1|AE001897_1 (AE001897) conserved hypothetical protein [Deinococcus radiodurans]
Length = 376
Score = 259 bits (662), Expect = 3e-68
Identities = 140/362 (38%), Positives = 221/362 (60%), Gaps = 12/362 (3%)
Query: 4 LEKVLDNQVTESKELVRLYDY-DLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADA 62
+EKV Q E ++L+ DL TL +AD ++ +H V+F + L +NIC
Sbjct: 13 VEKVEAGQRLTFDEGMQLFHTRDLNTLMRLADLQKRQLHGDKVFFVHSMRLEFTNICYVG 72
Query: 63 CKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETI 122
C FCAF+A + ++ +E++ +V Y GI E+H+ S H+PN+ +E+Y + + +
Sbjct: 73 CTFCAFAARKGEERAWDYDPDEVVAQVGRRYLPGITELHMSSGHHPNHKWEYYPAMVQKL 132
Query: 123 KQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKIC 182
++ P+L +KA TAAE+ LS KP VL ++ AG+ +MPGGGAEIF + +R+++
Sbjct: 133 REAYPDLQVKAFTAAEIEHLSKISKKPTREVLAELQAAGLSAMPGGGAEIFADRVRKQVA 192
Query: 183 NGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEG 242
KV + +WL+IH H+LG +NATML+GHIE R+DHM R++++Q ++ G
Sbjct: 193 KNKVKAEKWLQIHREAHELGMRTNATMLYGHIETLEERLDHMHRLRELQ-------DQTG 245
Query: 243 GFNAFIPLLYQKENNYL--NVEKS--PSAIEILKTIAISRILLNNIPHIKAYWATLGLNL 298
GF+AFIPL +Q N L N+ K+ + ++ L+ +A++RI L+N PHIK YW +G L
Sbjct: 246 GFHAFIPLAFQPLGNTLAQNLGKTEYTTGLDDLRNLAVARIYLDNFPHIKGYWVMIGSEL 305
Query: 299 ALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQ 358
V+ ++G +D+DGTI+ E I AAGA S L + ++ I+ AG V V RD+ YN ++
Sbjct: 306 TQVSLDWGVSDIDGTIQEEHIAHAAGATSPMALSQAGMVKMIQSAGRVPVLRDAYYNELE 365
Query: 359 KF 360
F
Sbjct: 366 VF 367
>ref|NP_244278.1| (NC_002570) BH3411~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB07130.1| (AP001518) BH3411~unknown conserved protein in others [Bacillus
halodurans]
Length = 364
Score = 251 bits (642), Expect = 7e-66
Identities = 131/357 (36%), Positives = 207/357 (57%), Gaps = 8/357 (2%)
Query: 5 EKVLDNQVTESKELVRLYDY-DLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADAC 63
EKV + ++ + LY+ DL + ++A+++ + VYF N ++NP+N+C C
Sbjct: 15 EKVEHGERLTIEDGLYLYETSDLLGVAQLANKVNSEKNGDHVYFIENMYINPTNVCEANC 74
Query: 64 KFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIK 123
FC F Y M E +L V+ +N I+E HIV HN + +++YL T+K
Sbjct: 75 SFCGFKRKPGQEGAYTMDSETLLRYVEERWNDNIREFHIVGGHNTDVPFDYYLDTIRTLK 134
Query: 124 QEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICN 183
+ P + +KA T AE+ F S + VLE+++KAG+D++PGGGAEI E R K+
Sbjct: 135 KNFPQVTVKAYTGAEIEFFSRLAGISMKEVLEELIKAGLDTLPGGGAEILTERYRAKMSP 194
Query: 184 GKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGG 243
K + +WLE H H LG ++ATML+G IE+ R+ HM R++ Q+++K G
Sbjct: 195 DKASTDQWLEAHEIAHGLGLKTHATMLYGSIESNEERLIHMDRVR-------QLQDKTNG 247
Query: 244 FNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQ 303
+ FIPL Q + +++ SA + ++TIAISR++L+NI HIKAYW +G+ L +A
Sbjct: 248 YMVFIPLAMQPRSVKAGLKRRTSAFDDMRTIAISRLMLDNIDHIKAYWINIGVQLTQMAL 307
Query: 304 EFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
FG++D+ GT+ E I + GA + G+ +++LI IK A VERD+ YN I+ +
Sbjct: 308 TFGSDDIHGTLIEERISHSVGALTSQGITRDELIHLIKSANKTPVERDTFYNIIKSY 364
>ref|NP_069224.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||D69298 conserved hypothetical protein AF0388 - Archaeoglobus fulgidus
gb|AAB90843.1| (AE001077) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 306
Score = 246 bits (628), Expect = 3e-64
Identities = 138/314 (43%), Positives = 187/314 (58%), Gaps = 15/314 (4%)
Query: 47 FNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAH 106
F VNRH+N ++IC C CAF+ N Y +S EEIL KV+ GI EVHIV H
Sbjct: 3 FVVNRHINYTDICVAKCPLCAFN----NREGYLLSPEEILRKVREV--DGITEVHIVGGH 56
Query: 107 NPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMP 166
NP E++ +VF IK+E P + +KA+TA EV++ + K L + AG+ +MP
Sbjct: 57 NPEVGVEYFEEVFRRIKREKPEVVIKALTATEVYYYAKKEKMSIREFLSRLKDAGLQAMP 116
Query: 167 GGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLR 226
GGGAEI + +RRKI K S WL + H+LG SNATMLFGH+E HR H+ R
Sbjct: 117 GGGAEILVDSVRRKISPNKCSSDEWLRVMKIAHELGIKSNATMLFGHVEEIRHRAIHLYR 176
Query: 227 IKKIQSPKNQVENKEGGFNAFIPLLYQKENNYLN--VEKSPSAIEILKTIAISRILLNNI 284
++K+Q K GGF +FIPL+Y ENN L V + + ++ILKTIA+SRI L+N
Sbjct: 177 LRKLQ-------EKTGGFVSFIPLVYHPENNPLGKIVREKTNPVDILKTIAVSRIALDNF 229
Query: 285 PHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAG 344
++AYW LG L VA FGAND+DGT+ E + AAGA++ GL E L+ + AG
Sbjct: 230 RSVRAYWVMLGEKLTEVALRFGANDIDGTVVEEKVTHAAGAETPAGLTVERLVEICRSAG 289
Query: 345 FVAVERDSLYNFIQ 358
+RD+ N ++
Sbjct: 290 KRVGQRDTFCNILK 303
>ref|NP_213540.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||H70368 conserved hypothetical protein aq_789 - Aquifex aeolicus
gb|AAC06943.1| (AE000707) hypothetical protein [Aquifex aeolicus]
Length = 361
Score = 227 bits (579), Expect = 1e-58
Identities = 128/358 (35%), Positives = 206/358 (56%), Gaps = 10/358 (2%)
Query: 5 EKVLDNQVTESKELVRLYDY-DLYTLGEVADRMRQNMH-QKIVYFNVNRHLNPSNICADA 62
EKV++ + +E + L++ D TLG +A+ +R+ H IV F V+R++N +N+C
Sbjct: 11 EKVINGERIYPEEALYLWENADFVTLGNLANFVRKKFHPDDIVTFVVDRNVNYTNVCIAG 70
Query: 63 CKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETI 122
CKFCAF + + + Y + ++ IL+KVK G + + NP+ E+Y + I
Sbjct: 71 CKFCAFYRRKSDEDAYVLDMDTILQKVKELVEWGGTTLLMQGGINPDLPLEFYEDMISQI 130
Query: 123 KQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKIC 182
K+ P + + +A E+ +LS K P E V+ + KAG+ S+PGGGAEI +E+R KI
Sbjct: 131 KKHFPQVQIHCFSAPEIVYLSKKEKLPIEEVIRRLKKAGLMSIPGGGAEILSQEVRDKIS 190
Query: 183 NGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEG 242
GK W E+H H+LG + ATM+FGH+E+ H I+H+ R++KIQ ++ G
Sbjct: 191 PGKCTVEEWEEVHRTAHRLGMTTTATMMFGHVESIEHIIEHLERVRKIQ-------DETG 243
Query: 243 GFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVA 302
GF AFIP ++K N L+ + + LK +A+SRI L+N +I++ T + + L+
Sbjct: 244 GFTAFIPWTFKKGNTELDFVEEATPTYYLKVLALSRIYLDNFKNIQSSHVTQTMQIGLIG 303
Query: 303 QEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
FGANDL + E++ S+ K R + E+++ IK AGF+ +RD+ YN I+ F
Sbjct: 304 LHFGANDLGSVMIEENVISSTNFKVRIP-KVEEMVRAIKSAGFIPAQRDTYYNIIKVF 360
>ref|NP_069226.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||F69298 conserved hypothetical protein AF0390 - Archaeoglobus fulgidus
gb|AAB90841.1| (AE001077) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 355
Score = 218 bits (554), Expect = 1e-55
Identities = 119/353 (33%), Positives = 195/353 (54%), Gaps = 13/353 (3%)
Query: 10 NQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFS 69
N+ K+ + L+ ++ +G +AD +R+ +V F + ++N +NIC C+FCAF
Sbjct: 14 NEKITKKDALELFSLPIHAVGRIADEIRKVKCGDLVTFVNDTNINYTNICLSKCRFCAFY 73
Query: 70 AHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNL 129
A K Y +S EEIL KV + G ++ + NP+ EW+ ++F IK ++
Sbjct: 74 AREKG---YVLSHEEILRKVGYAVKMGATQIMLQGGMNPDLGLEWFEELFRKIKARFSSV 130
Query: 130 HLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSS 189
H+ +++ E+ FL+ VL+ + AG+DS+PGGGAEI + +RRKI K S
Sbjct: 131 HIHSLSPPEIVFLAKLERSSIREVLDRLKAAGLDSLPGGGAEILVDSVRRKISPNKCSSD 190
Query: 190 RWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIP 249
WL + H L + ATM+FGH+E+ ++H+++I+++Q K GGF AFIP
Sbjct: 191 EWLRVMETAHSLNMPTTATMMFGHVESDGDIVEHLIKIRELQ-------EKTGGFTAFIP 243
Query: 250 LLYQKENN--YLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGA 307
+Q N Y +++ S + L+ +AISRI+LNN +I+A W T G +A ++ FGA
Sbjct: 244 WTFQPGNTELYAEIKRPVSPLRYLQVLAISRIVLNNFRNIQASWLTQGFEIATLSLFFGA 303
Query: 308 NDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
ND GT+ E++ A G K + E+++ +K G RD+ YN ++ F
Sbjct: 304 NDFGGTMLEENVVRATG-KDFRPAKIEEIVKAVKAVGRPVALRDTYYNILEWF 355
>ref|NP_393693.1| (NC_002578) conserved hypothetical protein [Thermoplasma
acidophilum]
emb|CAC11361.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 365
Score = 209 bits (532), Expect = 4e-53
Identities = 122/364 (33%), Positives = 209/364 (56%), Gaps = 15/364 (4%)
Query: 4 LEKVLDN-QVTESKELVRLYDY-DLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICAD 61
+EK +D + + ++V +YD D+ LG++A ++ + + V F N LN +NIC
Sbjct: 10 IEKKIDRGEDLDEDDIVYMYDEADVNDLGKLARKITEKISGNRVSFVSNIILNYTNICNV 69
Query: 62 ACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFET 121
CKFCAF K + Y M+ ++++E+++ Y GIK+V I NPN ++Y+ VF
Sbjct: 70 RCKFCAFYRTGKEDDAYTMTPDQVIEEIRKYYPLGIKQVLIQGGVNPNLDLDYYIDVFRK 129
Query: 122 IKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKI 181
I++E P++ + ++ AE++F+S K +E + + AG++++PG GAEI DE+IR +
Sbjct: 130 IRKEFPDVGINGLSTAEINFISRKARMSYEDTISVLRDAGLETIPGAGAEILDEDIRVAL 189
Query: 182 CNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKE 241
+WLEI H++G ++ATM++GHIE I++ H++ I+ +Q K
Sbjct: 190 GRPSGSGKQWLEIMETAHRIGVKTSATMVYGHIEKSINKAHHLIAIRDLQ-------KKY 242
Query: 242 GGFNAFIPLLYQKENNYLN----VEKSPSAIEILKTIAISRILLN-NIPHIKAYWATLGL 296
GF +F + +N L ++ A ++++ +AISRI+LN ++P I++ W T G+
Sbjct: 243 HGFLSFTAWNMEPDNTQLQREGILKYRSQAEDVIRNVAISRIVLNYHLPIIQSSWLTNGV 302
Query: 297 NLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNF 356
+ +A +G+ND GTI E + A G K L KE +I I+D G V VERD+LY
Sbjct: 303 EMGQLAIIYGSNDWGGTIYDERVIPATG-KQVGNLRKEIIIRSIRDLGMVPVERDNLYRT 361
Query: 357 IQKF 360
++ +
Sbjct: 362 VKVY 365
>ref|NP_111898.1| (NC_002689) Uncharacterized conserved protein [Thermoplasma
volcanium]
dbj|BAB60547.1| (AP000996) hypothetical protein [Thermoplasma volcanium]
Length = 366
Score = 205 bits (522), Expect = 6e-52
Identities = 123/359 (34%), Positives = 201/359 (55%), Gaps = 14/359 (3%)
Query: 5 EKVLDNQVTESKELVRLYDY-DLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADAC 63
EK+ + + ++V +YD D+ LG++A + + K V F N LN +NIC C
Sbjct: 12 EKIERREDLDEDDIVYMYDEADVNDLGKLARSITDKISGKRVSFVSNIILNYTNICNVRC 71
Query: 64 KFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIK 123
KFCAF + Y M+ + ++++++ Y GI+++ I NPN ++YL VF I+
Sbjct: 72 KFCAFYRKSGEYDAYTMTPDGVIDEIRKYYPYGIRQILIQGGVNPNLDLDYYLTVFRKIR 131
Query: 124 QEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICN 183
+ + ++AAE++F+S K + +E + + +AG++++PG GAEI DE++R K+
Sbjct: 132 ENFTEAGINGLSAAEINFISKKAHLTYEETILKLKEAGLETIPGAGAEILDEDVRVKLGR 191
Query: 184 GKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGG 243
+ +WLEI H+LG + ATM++GHIE+ + + H++ I+ +Q K G
Sbjct: 192 PRGSGRQWLEIMETAHRLGVKTTATMVYGHIESSMDKARHLISIRNLQ-------KKYHG 244
Query: 244 FNAFIPLLYQKENNYLNVE----KSPSAIEILKTIAISRILLN-NIPHIKAYWATLGLNL 298
F +F P + +N L E A ++++ IAISRI+ N ++P I++ W T G+ +
Sbjct: 245 FLSFTPWNMEPDNTELQKEGILKYRAGAEDVIRNIAISRIVFNYDLPIIQSSWLTNGVEM 304
Query: 299 ALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFI 357
+A +GAND GTI E + A G K L KE +I IKD G V VERD+LY I
Sbjct: 305 GQLAILYGANDWGGTIYDEKVIPATG-KRVGNLRKEIIIRSIKDLGMVPVERDNLYREI 362
>ref|NP_069632.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||F69349 conserved hypothetical protein AF0798 - Archaeoglobus fulgidus
gb|AAB90440.1| (AE001049) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 338
Score = 202 bits (513), Expect = 6e-51
Identities = 122/333 (36%), Positives = 186/333 (55%), Gaps = 13/333 (3%)
Query: 27 YTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEEIL 86
Y +AD +R+ + V + VNR++N ++IC + CKFC+F +N Y +SL+EI
Sbjct: 16 YETFRIADELRRELVGDTVTYVVNRNINFTDICINDCKFCSF----RNRKKYLLSLDEIK 71
Query: 87 EKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSVKF 146
+KV+ + G E+ I P+ ++YL + + ++ +H+ A + EV +
Sbjct: 72 QKVEEAVEFGCTELCIQGGLLPDADLDFYLSILQAVRDVDKKIHIHAFSPMEVVHAARNS 131
Query: 147 NKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKMSN 206
E VL+++ K G+ SMPG AEI D+ IR IC K+ ++ W+E+ H++G +
Sbjct: 132 GMTVEEVLKELKKEGLGSMPGTAAEILDDSIRALICPRKLKTAEWVEVIKTAHRVGIPTT 191
Query: 207 ATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYL-NVEKSP 265
AT+++GHI+ HRI+H+L IKKIQ + GG IPL + +NN L K
Sbjct: 192 ATIMYGHIDTWEHRINHLLLIKKIQ-------QETGGITELIPLPFMSKNNELGRYAKGS 244
Query: 266 SAIEILKTIAISRILL-NNIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQSAAG 324
S + L IAI+RILL I +I+A W +G LA A GANDL GT+ E+I +AG
Sbjct: 245 SGFDDLLMIAIARILLYPEIKNIQASWVKMGQKLAQAALHVGANDLGGTLMEENISKSAG 304
Query: 325 AKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFI 357
A S + E+L IK AG V +RD+LYN +
Sbjct: 305 ATSGEFMHPEELRELIKIAGRVPKQRDTLYNIL 337
>ref|NP_614180.1| (NC_003551) Predicted enzyme related to thiamine biosynthesis
enzyme ThiH [Methanopyrus kandleri AV19]
gb|AAM02110.1| (AE010379) Predicted enzyme related to thiamine biosynthesis
enzyme ThiH [Methanopyrus kandleri AV19]
Length = 369
Score = 201 bits (512), Expect = 8e-51
Identities = 113/341 (33%), Positives = 187/341 (54%), Gaps = 12/341 (3%)
Query: 25 DLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEE 84
D Y + A R + + V F VNR++N +N+C + C+FCAF +P+ Y M+ EE
Sbjct: 36 DPYKVMRAAHEARLKIVGEHVTFVVNRNINFTNVCINRCRFCAFRRDPDDPDAYRMTPEE 95
Query: 85 ILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSV 144
+ E+ + + G EV + +P ++E+YL++ + IK + P++H+ + EV + +
Sbjct: 96 VGERAAEARDAGATEVCLQGGLHPEATFEYYLEMLDEIKSQAPDIHVHGYSPMEVKYCAK 155
Query: 145 KFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKM 204
+ E VL ++ +AG+DSMPG AEIF E+R+++C K+ + W I H+LG
Sbjct: 156 LAGEDIEDVLRELKRAGLDSMPGTAAEIFSPEVRKRLCPDKLEADEWEHIIRIAHELGIP 215
Query: 205 SNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYL----N 260
+ TM++GHI++ IDHM R++ IQ GGF F+PL + N +
Sbjct: 216 TTCTMMYGHIDSPRDWIDHMKRLRGIQ-------EDTGGFTEFVPLSFVHSNAPIYRRGG 268
Query: 261 VEKSPSAIEILKTIAISRILLNN-IPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESI 319
S + + A++R+ IP+I+A W LG+ LA + GANDL GT+ E+I
Sbjct: 269 ARPGVSGMTDVLVHAVARLYFGPLIPNIQASWVKLGVKLAQMTLHAGANDLGGTLMEENI 328
Query: 320 QSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
AGA LE E+++ I++AGF V+R +LY ++ +
Sbjct: 329 SREAGATEGEQLEPEEIVEIIREAGFTPVQRTTLYEPVKVY 369
>ref|NP_628712.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
pir||T34636 conserved hypothetical protein SC10A7.33c - Streptomyces coelicolor
emb|CAB44543.1| (AL078618) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 399
Score = 199 bits (506), Expect = 4e-50
Identities = 120/363 (33%), Positives = 191/363 (52%), Gaps = 18/363 (4%)
Query: 4 LEKVLDN-----QVTESKELVRLYDYDLYTLGEVADRMRQNMH---QKIVYFNVNRHLNP 55
L+ +LD ++T + L D L+ LG AD +R+ + + I + + R++N
Sbjct: 7 LQPILDRAAAGGRITPEEALDLYRDAPLHALGAAADAVRRRRYAGTEHIATYIIERNINY 66
Query: 56 SNICADACKFCAFSAHRKNPNP-YEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEW 114
+N+C ACKFCAF A K+ + L++IL + + G ++ H+P+Y E+
Sbjct: 67 TNVCVTACKFCAFYAAPKDTKKGWSRDLDDILRRCAETVELGGTQIMFQGGHHPDYGVEY 126
Query: 115 YLKVFETIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFD 174
Y + F IK+E P L + ++ A+EV ++ E + + AG+DS G GAE+
Sbjct: 127 YEEHFAAIKKEFPQLVIHSLGASEVEHMARISKVSVEEAIRRIHAAGLDSFAGAGAELLP 186
Query: 175 EEIRRKICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPK 234
E R+ I K RWLEI H LG S +TML G E RI+H+ I+ +Q
Sbjct: 187 ERPRKAIAPLKESGERWLEIMEIAHGLGVESTSTMLMGTGETNAERIEHLRMIRDVQ--- 243
Query: 235 NQVENKEGGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATL 294
++ GGF AFIP YQ ENN+L + E L+ IAI+R+ L+N+ HI+ W T
Sbjct: 244 ----DRTGGFRAFIPYTYQPENNHLKGRTQATLFEYLRMIAIARVFLDNVAHIQGSWLTT 299
Query: 295 GLNLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLY 354
G + ++ +GA+DL + E++ S+AGAK H + ++I I+ AG V +R + Y
Sbjct: 300 GKEVGQLSLHYGADDLGSIMLEENVVSSAGAK--HRSNRLEIIDLIRKAGRVPAQRATTY 357
Query: 355 NFI 357
+
Sbjct: 358 EHL 360
>ref|NP_281649.1| (NC_002163) hypothetical protein Cj0462 [Campylobacter jejuni]
pir||A81391 hypothetical protein Cj0462 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75100.1| (AL139075) hypothetical protein Cj0462 [Campylobacter jejuni]
Length = 348
Score = 197 bits (500), Expect = 2e-49
Identities = 113/356 (31%), Positives = 197/356 (54%), Gaps = 16/356 (4%)
Query: 11 QVTESKELVRLYDYDLYTLGEVADRMRQNMH-QKIVYFNVNRHLNPSNICADACKFCAFS 69
++ + + L L+ L LGE+A + + +H +KI F V+R++N +N+C C FCAF
Sbjct: 3 RLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDRNINYTNVCCIDCSFCAFY 62
Query: 70 AHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNL 129
H K + Y +S EEI +K++ G ++ +P EWY ++ IK+ PN+
Sbjct: 63 RHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPKLKIEWYEELVSWIKEHYPNI 122
Query: 130 HLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSS 189
+ +A E+ +++ VL+ + G+ S+PG GAE+ + +R I K ++
Sbjct: 123 TVHGFSAVEIAYIAKASKISITEVLKRLQAKGLFSIPGAGAEVLSDRVRDIIAPNKCDTA 182
Query: 190 RWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIP 249
WLE+H HK+G S ATM+FG +EN IDH ++K+Q ++ GGF AFI
Sbjct: 183 TWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFEHLRKLQ-------DETGGFRAFIL 235
Query: 250 LLYQKENNYLNVEKSP-----SAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQE 304
+Q +N L ++K P S+ + L+ +A+ R+ L+N ++++ W T G + +A +
Sbjct: 236 WSFQSDNTAL-IQKHPEIMKQSSNKYLRLLALVRLYLDNFKNLQSSWVTQGSLIGQLALK 294
Query: 305 FGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
FGANDL T+ E++ SAAGA R + ++++I I+ G +R++ Y +++F
Sbjct: 295 FGANDLGSTMMEENVVSAAGASYR--MNQDEMIRLIRSLGENPAKRNTAYEILERF 348
>ref|NP_559113.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL63295.1| (AE009807) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 352
Score = 195 bits (495), Expect = 8e-49
Identities = 116/359 (32%), Positives = 197/359 (54%), Gaps = 12/359 (3%)
Query: 6 KVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKF 65
+ + + + +E+ L DL+ LG A +R+ ++ + F N LN +N+C C F
Sbjct: 2 RAVSAEAPKREEIEELLKTDLWELGRRAYEIRRRLYGDVATFIPNMVLNYTNVCVVGCSF 61
Query: 66 CAFSAHRKNPNPYEMSLEEILEKVKN-SYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQ 124
CAF ++ Y S+E+ +++V GI++V I NP E++ +F IK
Sbjct: 62 CAFYRPPRHREAYTYSVEDAVKRVLEVDARYGIRQVLIQGGVNPEIGIEYFEGLFRAIKS 121
Query: 125 EMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNG 184
+ P++ + A++ EV +L+ + + +LE + +AG++SMPGGG EI +E+R+ I
Sbjct: 122 KAPHIAIHALSPLEVEYLARRERASYREILERLKEAGMESMPGGGGEILVDEVRKIISPK 181
Query: 185 KVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGF 244
K+ S WL I HKLG S+ATM++GH+E+ +H+ +I ++Q+ K GGF
Sbjct: 182 KIDSETWLRIMEEAHKLGIPSSATMMYGHVESLRDIAEHLYKIAQLQA-------KTGGF 234
Query: 245 NAFIPLLYQKENNYL--NVEKSPSAIEILKTIAISRILLNN-IPHIKAYWATLGLNLALV 301
AFI ++ + L + ++ +L+ +A++RI+ N IPHI+A W T G A +
Sbjct: 235 MAFIAWNFEPGTSELGRKIPHPKTSATLLRMVAVARIVFNGLIPHIQAGWLTAGPETAQL 294
Query: 302 AQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
A FGA+D GT+ E + A++ +KED+I I+ GF ERD+LY ++ F
Sbjct: 295 ALYFGADDFGGTLYDEKVLEWKRAEAPID-KKEDVIAIIRGTGFRPAERDNLYRIVRYF 352
>ref|NP_634520.1| (NC_003901) Biotin synthase [Methanosarcina mazei Goe1]
gb|AAM32192.1| (AE013493) Biotin synthase [Methanosarcina mazei Goe1]
Length = 392
Score = 194 bits (493), Expect = 1e-48
Identities = 118/362 (32%), Positives = 198/362 (54%), Gaps = 19/362 (5%)
Query: 4 LEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADAC 63
+E+ + T+ L+ L + + + L E+A+ +R V + VNR++ +N C C
Sbjct: 21 IERAYKGKCTKEDALL-LLEGNPFELFELANDLRAIAAGDTVSYVVNRNIYITNKCVGNC 79
Query: 64 KFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIK 123
FCA+ + Y +S+EEIL+K ++ G EV + + P E+YL+V E++K
Sbjct: 80 GFCAYRTEKG----YILSIEEILKKAGDARKAGAVEVCVQGGYTPEADMEFYLEVIESLK 135
Query: 124 QEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICN 183
E P+L L A++ EV++ + E L + K+G+DS+ G AEI + +R+ IC
Sbjct: 136 AEYPDLCLHALSPMEVNYAAETSGMSVEEALRRLKKSGLDSLTGTSAEILSDRVRKIICP 195
Query: 184 GKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGG 243
K+ + +W++ HK G +NAT+++GH+E R+DH+ I++IQ + GG
Sbjct: 196 SKISTQQWIDTVTAAHKAGISTNATIMYGHVETLKERLDHVFTIREIQ-------KETGG 248
Query: 244 FNAFIPLLYQKENNYLNVEK------SPSAIEILKTIAISRILLNN-IPHIKAYWATLGL 296
F IP+ + NN + + S + +E L+ IAISR++L+ + +I+A W LG
Sbjct: 249 FTELIPMSFLPYNNPVGEKMLASGKFSSTGLEDLQLIAISRVILHTYVKNIQATWVKLGK 308
Query: 297 NLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNF 356
LA VA + GANDL GT+ + I +A+G + + + IK AG V V+RD+LY
Sbjct: 309 KLAQVALQCGANDLGGTLMEDQISTASGGSHGEYVSPAEFEWMIKGAGRVPVQRDTLYRK 368
Query: 357 IQ 358
I+
Sbjct: 369 IE 370
>ref|NP_147082.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||C72783 hypothetical protein APE0252 - Aeropyrum pernix (strain K1)
dbj|BAA79165.1| (AP000058) 392aa long hypothetical protein [Aeropyrum pernix]
Length = 392
Score = 192 bits (488), Expect = 5e-48
Identities = 121/364 (33%), Positives = 194/364 (53%), Gaps = 18/364 (4%)
Query: 4 LEKVLDNQVTESKELVRLY-DYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADA 62
LE+ + +V ++ RL + L+ + AD + + + + + VN +L +N+C
Sbjct: 21 LERAVYGEVLTRSDIERLLSETPLHPMAAAADYYARVIKKGVGSYIVNIYLAYTNVCVTR 80
Query: 63 CKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNK--GIKEVHIVSAHNPNYSYEWYLKVFE 120
C FC F + + E L +V K G++EVH+V ++P E+Y +
Sbjct: 81 CTFCDFYVPPERRSSGYTHPPEHLGRVAGLARKRLGVREVHMVGGNDPELPLEYYEEAIR 140
Query: 121 TIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRK 180
IK+ P + LKA TA E+ F++ + VL +AG+D++PGGGAE+ EE+R++
Sbjct: 141 EIKRVAPGVVLKAFTAEEIGFIAKATGNTPKEVLARFREAGLDALPGGGAEVLSEEVRKR 200
Query: 181 ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENK 240
I K+ S +LEIH H +G SN T+L+ HIE H +H+ RI+++Q +
Sbjct: 201 IAPLKISSDEYLEIHRLAHSMGIRSNITLLYAHIEEPRHVAEHLYRIRRLQ-------EE 253
Query: 241 EGGFNAFIPLLYQKENNYLN-----VEKSP-SAIEILKTIAISRI-LLNNIPHIKAYWAT 293
GGF +FIP+ + L+ V+K + L+ +A SR+ LL I +I AYW +
Sbjct: 254 TGGFISFIPIRFNPGKTPLSRHPEYVKKGDRGGLYDLRIVAASRLALLGAIDNIMAYWVS 313
Query: 294 LGLNLALVAQEFGANDLDGTIEIESIQSAAGA-KSRHGLEKEDLIFKIKDAGFVAVERDS 352
+G LA A GAND+ GT ES+ SAA + + R G+ L+F I AG+ +ERD+
Sbjct: 314 MGEKLAQAALSHGANDIGGTFYNESVISAASSLRKRKGMSPARLVFNIATAGWTPMERDT 373
Query: 353 LYNF 356
YN+
Sbjct: 374 FYNY 377
>ref|NP_111896.1| (NC_002689) Uncharacterized conserved protein [Thermoplasma
volcanium]
dbj|BAB60545.1| (AP000996) hypothetical protein [Thermoplasma volcanium]
Length = 365
Score = 192 bits (487), Expect = 7e-48
Identities = 122/354 (34%), Positives = 187/354 (52%), Gaps = 18/354 (5%)
Query: 14 ESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRK 73
E + + L + DLY L ++ADR+ + V + ++ ++N +N C +C CAF K
Sbjct: 19 EYSDSIDLLNMDLYDLMKLADRLTHYDAGETVSYAISYNINYTNYCTASCPICAFYVPYK 78
Query: 74 NPN---PYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLH 130
N YE++ E++ ++ + KG E+HIV +P+ S E+Y +F TI+ MPN+
Sbjct: 79 NKRFGKGYELTKEQVRKEALIAKQKGATEIHIVGGFDPDLSIEYYEDIFRTIRGIMPNVA 138
Query: 131 LKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICN-GKVGSS 189
+KA T E+ F++ + + + AG+++ GGGAEIFD+EIR+ I KV
Sbjct: 139 IKAFTIPEIDFIARTTGNSIKETVLRFMDAGMNAHTGGGAEIFDQEIRKYITTPEKVSGE 198
Query: 190 RWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIP 249
+WLE H LG N+TM +GHIE H IDHM+R++ NQ+E GF +FIP
Sbjct: 199 KWLEDAKIIHSLGLKGNSTMTYGHIEGWEHIIDHMIRLR-----DNQIE--VPGFLSFIP 251
Query: 250 LLYQKENNYL----NVEKSPSAIEILKTIAISRILLNN-IPHIKAYWATLGLNLALVAQE 304
L + EN L V + LK IA++RI++ I +I YW +G A +A
Sbjct: 252 LKFSPENTALLRSGRVHGPAPVDKDLKVIALARIIMGRAIRNISVYWVAIGKLTAQIAIN 311
Query: 305 FGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQ 358
G NDL GT E + A K+ E+L I+ AG + RD+ YN ++
Sbjct: 312 GGGNDLVGTAYSEKVFGATDRKT--STTTEELNNMIRQAGKIPGVRDTFYNIVE 363
>ref|NP_616423.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04903.1| (AE010818) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 406
Score = 191 bits (485), Expect = 1e-47
Identities = 112/364 (30%), Positives = 200/364 (54%), Gaps = 19/364 (5%)
Query: 2 DFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICAD 61
D +E+V + T+ L+ L + + + L E+A+++R + +V + VNR++ +N C
Sbjct: 33 DVIERVQQGKCTKEDALL-LLEGNPFELFELANKLRASTVGDVVSYVVNRNIYITNKCVG 91
Query: 62 ACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFET 121
C FCA+ + Y +S+EEIL++ + + G EV + + P E+YL++ E
Sbjct: 92 TCGFCAY----RTDEGYILSIEEILKQTEEAREAGAVEVCVQGGYTPEADMEFYLEIIEA 147
Query: 122 IKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKI 181
IK P++ + A++ EV++ + E L + K G+DS+ G AEI + +R+ I
Sbjct: 148 IKSGFPDICIHALSPMEVNYAAGLSGMSVEDALRKLKKCGLDSLTGTSAEILSDRVRKII 207
Query: 182 CNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKE 241
C GK+ + +W++ H+ G +N+T+++GH+E R+DH+ I++IQ +
Sbjct: 208 CPGKITTQQWVDTVTAAHRAGISTNSTIMYGHVETLEERLDHVFTIREIQ-------KET 260
Query: 242 GGFNAFIPLLYQKENNYLNVEKSPS------AIEILKTIAISRILLN-NIPHIKAYWATL 294
GG + IP+ + NN + + S +E L+ IAISRI+L+ ++ +I+A W L
Sbjct: 261 GGISELIPMSFLPYNNPIGEKMMASGKFTSTGLEDLQLIAISRIILHTHVNNIQATWVKL 320
Query: 295 GLNLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLY 354
G LA A + GANDL GT+ + I +A+G + + + IK AG V ++RD+LY
Sbjct: 321 GKKLAQFALQCGANDLGGTLMEDQISTASGGSYGEYVSPAEFEWMIKGAGRVPIQRDTLY 380
Query: 355 NFIQ 358
++
Sbjct: 381 RKVE 384
>ref|NP_275959.1| (NC_000916) conserved protein [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
pir||F69209 conserved hypothetical protein MTH820 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85320.1| (AE000859) conserved protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 403
Score = 189 bits (481), Expect = 3e-47
Identities = 116/362 (32%), Positives = 188/362 (51%), Gaps = 14/362 (3%)
Query: 4 LEKVLDNQVT--ESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICAD 61
L+K +D +T E+ L+ + DL L AD +R+ + + N ++N +NIC+
Sbjct: 47 LQKAMDEPITKEEALYLMGVTGRDLQALMIAADMVREAEAGDRITYIENWNINFTNICSG 106
Query: 62 ACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFET 121
C FCAF + + Y + E ILE + KG +E+ I P +Y +
Sbjct: 107 QCGFCAFKRDAADGDSYYLETERILEIAAEAIEKGARELCIQGGLYPGLDTYFYEDLIRA 166
Query: 122 IKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKI 181
IK E P++HL + + EV++ + E L+ + +AG+ SMPG AEI D+++R I
Sbjct: 167 IKSEFPDVHLHSFSPMEVYYGAQNAELTVEEALKILKRAGLGSMPGTAAEILDDDVRAVI 226
Query: 182 CNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKE 241
C K+ + W+E+ H++G + TM++GHI+ HR++HM +++IQ K
Sbjct: 227 CPTKLSTGEWVEVIETAHRVGIPTTCTMMYGHIDGPEHRVEHMDILRRIQ-------EKT 279
Query: 242 GGFNAFIPLLYQKENNYLNVE----KSPSAIEILKTIAISRILLNN-IPHIKAYWATLGL 296
GGF F+PL + + + E + + LK AISR++ I +I+A W LG
Sbjct: 280 GGFTEFVPLPFMHPHAPIYREGLAMPGATGADDLKVYAISRLMFRGLIENIQASWVKLGF 339
Query: 297 NLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNF 356
A VA GAND+ GT+ E+I +AGA E E++I ++D G + RD+LY
Sbjct: 340 KFAQVALLSGANDIGGTLGEENISKSAGASHGVRTEPEEIIRVVRDIGRIPARRDTLYRE 399
Query: 357 IQ 358
I+
Sbjct: 400 IE 401
>ref|NP_393695.1| (NC_002578) conserved hypothetical protein [Thermoplasma
acidophilum]
emb|CAC11363.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 365
Score = 188 bits (478), Expect = 7e-47
Identities = 119/351 (33%), Positives = 190/351 (53%), Gaps = 18/351 (5%)
Query: 16 KELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNP 75
+E + L D++ L ++A+R+ + + V + V+ ++N +N C +C CAF KN
Sbjct: 21 QEAMDLSGMDVFDLMKIANRLTEIDVGETVTYAVSYNINYTNYCTASCPICAFYVPYKNK 80
Query: 76 N---PYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLK 132
YE++ E I+ + + + + EVHIV NP+ S E+Y +F TI+ MP++ +K
Sbjct: 81 RFGKGYELTKEMIMHEAYEAKKRQVTEVHIVGGFNPDLSIEYYEDMFRTIRSIMPDVAIK 140
Query: 133 AMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICN-GKVGSSRW 191
A T E+ F++ + + ++AG+++ GGGAEIFD E+RR + K+ +W
Sbjct: 141 AFTIPEIDFIARTTGNSIKETVSRFMEAGMNAHTGGGAEIFDPEVRRIVATPEKISGEKW 200
Query: 192 LEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLL 251
LE HKLG N+TM +GH+E H +DHM+RI+ NQ+E GF +FIPL
Sbjct: 201 LEDAKIIHKLGLKGNSTMTYGHVEGWNHIVDHMIRIR-----DNQME--VPGFLSFIPLK 253
Query: 252 YQKENNYL---NVEKSPSAIE-ILKTIAISRILLNN-IPHIKAYWATLGLNLALVAQEFG 306
+ EN L K P+ ++ LK IA++RIL+ I +I YW LG +A +A G
Sbjct: 254 FSPENTALLKSGRVKGPAPVDKDLKVIALARILMGEAIRNISVYWVALGKLVAQIAINGG 313
Query: 307 ANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFI 357
+DL GT E + A R+ E+L ++ AG + RD+ YN +
Sbjct: 314 GSDLVGTAYSEKVFGA--TDRRNPTTTEELNHLVRQAGKIPAIRDTFYNIM 362
>ref|NP_559112.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL63294.1| (AE009807) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 359
Score = 188 bits (478), Expect = 7e-47
Identities = 118/363 (32%), Positives = 194/363 (52%), Gaps = 20/363 (5%)
Query: 1 MDFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICA 60
++ E+ LD S + + + D++TL +VAD + + +V F N +N SNIC
Sbjct: 8 LEMAERGLDR----SDAVFLMKEADVFTLAKVADELTRKYFGDVVTFVNNVVINYSNICV 63
Query: 61 DACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNK-GIKEVHIVSAHNPNYSYEWYLKVF 119
C CAF + Y S EE+ V+ + + G+ E+HI NP + E++ ++F
Sbjct: 64 AKCPICAFYRLPGHKEGYLRSPEEVAAMVEFFHRQYGVTELHINGGFNPFIAPEYFDELF 123
Query: 120 ETIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRR 179
+K+ P++ +K T AEV + + + + VL +AG+D++ GGGAEIF EE+RR
Sbjct: 124 RAVKKRAPHITIKGPTMAEVDYYARLWKTSWREVLSRWKEAGLDAISGGGAEIFAEEVRR 183
Query: 180 KICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVEN 239
I K+ W++I H++G SNATML+GH+E H +DH+ RIK++Q
Sbjct: 184 IISPHKISGEEWVKIAEVAHEMGIPSNATMLYGHVERVEHVVDHLFRIKELQ-------E 236
Query: 240 KEGGFNAFIPLLYQKENNYLN-----VEKSPSAIEILKTIAISRILLNNIPHIKAYWATL 294
+ GG FIP+ + N L +PS ++ K +AI+R++L + + AYW ++
Sbjct: 237 RTGGLMLFIPVKFNPLNTELAARGVVARPAPSTYDV-KVVAIARLILKDRLKVGAYWLSV 295
Query: 295 GLNLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLY 354
G LA GANDL GT+ E++ ++AGA +H E+L ++AG RD+ +
Sbjct: 296 GKKLASTLLLSGANDLVGTMYNEAVLTSAGA--QHNATAEELAAIAREAGRRPALRDTFH 353
Query: 355 NFI 357
+
Sbjct: 354 RIL 356
>ref|NP_207450.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||H64601 conserved hypothetical protein HP0656 - Helicobacter pylori
(strain 26695)
gb|AAD07721.1| (AE000579) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 383
Score = 187 bits (476), Expect = 1e-46
Identities = 110/340 (32%), Positives = 185/340 (54%), Gaps = 14/340 (4%)
Query: 26 LYTLGEVADRMRQNMH-QKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEE 84
L LG+ A R++Q +H + + F V+R++N +NIC CKFCAF K + Y +S EE
Sbjct: 47 LKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEE 106
Query: 85 ILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSV 144
I +K++ G ++ +P ++Y + I Q+ P + + +A E+ ++S
Sbjct: 107 IDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISK 166
Query: 145 KFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKM 204
+ VLE + AG+ S+PG GAE+ + +R I K+ S RW+E+H H G
Sbjct: 167 ISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIK 226
Query: 205 SNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYLNVE-- 262
S ATM+FG ++N+ ++H+ R++ +Q ++ GGF AFI +Q N L E
Sbjct: 227 STATMMFGSVDNEEDVVEHLQRVRDLQ-------DETGGFRAFILWSFQPNNTPLKEEIP 279
Query: 263 --KSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQ 320
K S+ L+ +A SRI L+NI +I++ W T G + +A FGANDL + E++
Sbjct: 280 SIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVV 339
Query: 321 SAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
AAG + + + +I I+D G VA +R++ Y ++++
Sbjct: 340 KAAG--TSFCMNEAGMIELIEDIGSVAAKRNTAYEILKRY 377
>ref|NP_616424.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04904.1| (AE010818) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 375
Score = 187 bits (474), Expect = 2e-46
Identities = 116/364 (31%), Positives = 191/364 (51%), Gaps = 19/364 (5%)
Query: 2 DFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICAD 61
D +E+ + T+ ++ ++L + + L AD +R V + VNR++N ++ C
Sbjct: 8 DLMERAYQGKCTK-EDALQLLEVPPFELFRFADELRDLAVGDTVTYVVNRNINFTSRCVG 66
Query: 62 ACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFET 121
C FCAF + N +S+EEI+EKV+++ EV I P ++Y + E
Sbjct: 67 TCGFCAFRTN----NGKVLSIEEIMEKVRDAEKANATEVCIQGGLLPEVGLDFYQGIAEA 122
Query: 122 IKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKI 181
IK E P +H+ + + EV+ S P + L + ++G+D+MPG AEI + +R+ I
Sbjct: 123 IKAEFPEMHIHSFSPMEVYHASRISEIPVKEALRRLKRSGLDTMPGTAAEILSDRVRKII 182
Query: 182 CNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKE 241
C K+ ++ W+E+ H G + ATM++GH+E + RIDHML I+ IQ +
Sbjct: 183 CPSKLKTAEWVEVVRQAHAAGIPTTATMMYGHVETREERIDHMLIIRDIQ-------KET 235
Query: 242 GGFNAFIPLLYQKENNYLNVEK------SPSAIEILKTIAISRILLN-NIPHIKAYWATL 294
GG F+PL + NN + + + +E LK A+SRIL + ++ +I+A W L
Sbjct: 236 GGITEFVPLPFMPYNNPVGEKMIREGRYATPGLEDLKIYAVSRILFHGHVDNIQASWVKL 295
Query: 295 GLNLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLY 354
G LA + G NDL GT+ ESI +AGA + ++L + I AG + ER +LY
Sbjct: 296 GKKLAQFSLHCGTNDLGGTLMEESISRSAGACHGEMITVDELEWMIHGAGRIPKERTTLY 355
Query: 355 NFIQ 358
++
Sbjct: 356 RRVE 359
>ref|NP_219938.1| (NC_000117) Fe-S oxidoreductase [Chlamydia trachomatis]
pir||B71516 probable Fe-S oxidoreductase - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC68023.1| (AE001316) Fe-S oxidoreductase [Chlamydia trachomatis]
Length = 369
Score = 185 bits (470), Expect = 6e-46
Identities = 111/306 (36%), Positives = 170/306 (55%), Gaps = 12/306 (3%)
Query: 25 DLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEE 84
D L AD +R N V+++ +L P+N C C FC+F A NP + + ++
Sbjct: 43 DQQALWSFADLIRANRVGDTVFYSSTLYLYPTNFCQFNCTFCSFYAKPGNPTGWFFTPDQ 102
Query: 85 ILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSV 144
+++ +K + + I E HIV+ P+ + +Y ++F IKQ P+LH+KA++A E +LS
Sbjct: 103 LVQSIKENPSP-ITETHIVAGCYPSCNLAYYEELFSKIKQNFPDLHIKALSAIEYDYLSK 161
Query: 145 KFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKM 204
N P + V++ + AG+DS+PGGGAEI +E+R + G++ S +LEIH H LG
Sbjct: 162 LDNLPVKEVMQRLRIAGLDSIPGGGAEILVDEVRETLSRGRLSSQGFLEIHETAHSLGIP 221
Query: 205 SNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYLNVE-- 262
SNATML H E + HM +++ +Q +K GF FI L + ENN L
Sbjct: 222 SNATMLCYHRETPADIMTHMSKLRALQ-------DKTSGFKNFILLKFASENNALGKRLH 274
Query: 263 --KSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQ 320
S +I IA++R+ L+NIP+IKA W LGL++AL GANDL T + E +
Sbjct: 275 KMTSRHSIPPATIIAVARLFLDNIPNIKALWNYLGLDVALHLLSCGANDLSSTHQGEKVF 334
Query: 321 SAAGAK 326
A ++
Sbjct: 335 RMASSQ 340
>ref|NP_223319.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71910 hypothetical protein jhp0601 - Helicobacter pylori (strain J99)
gb|AAD06182.1| (AE001492) putative [Helicobacter pylori J99]
Length = 353
Score = 185 bits (470), Expect = 6e-46
Identities = 111/340 (32%), Positives = 185/340 (53%), Gaps = 14/340 (4%)
Query: 26 LYTLGEVADRMRQNMH-QKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEE 84
L LG+ A R++Q +H + + F V+R++N +NIC CKFCAF K + Y +S EE
Sbjct: 17 LKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEE 76
Query: 85 ILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSV 144
I +K++ G ++ +P ++Y + I Q+ P + + +A E+ ++S
Sbjct: 77 IDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISK 136
Query: 145 KFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKM 204
+ VLE + AG+ S+PG GAEI + +R I K+ S RW+E+H H G
Sbjct: 137 ISKLSLKEVLERLKNAGLSSIPGAGAEILSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIK 196
Query: 205 SNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYLNVE-- 262
S ATM+FG ++N+ I+H+ R++ +Q ++ GGF AFI +Q N L E
Sbjct: 197 STATMMFGSVDNEEDVIEHLQRVRDLQ-------DETGGFRAFILWSFQPNNTPLKEEIP 249
Query: 263 --KSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQ 320
K S+ L+ +A SRI L+NI +I++ W T G + +A GANDL + E++
Sbjct: 250 SIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLSGANDLGSVMMEENVV 309
Query: 321 SAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
AAG + + + ++I I+D G VA +R++ Y ++++
Sbjct: 310 KAAG--TSFCMIEAEMIELIEDIGSVAAKRNTAYEILKRY 347
>ref|NP_244009.1| (NC_002570) BH3143~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB06862.1| (AP001517) BH3143~unknown conserved protein in others [Bacillus
halodurans]
Length = 370
Score = 182 bits (463), Expect = 4e-45
Identities = 107/359 (29%), Positives = 194/359 (53%), Gaps = 11/359 (3%)
Query: 4 LEKVLDNQVTESKELVRLYDYD-LYTLGEVADRMRQNMH-QKIVYFNVNRHLNPSNICAD 61
LE+ ++ + ++ V+LY+ D + +G A+++ H + I F + R++N +N C
Sbjct: 7 LERAVNGERLSMEDAVKLYESDEVEKMGAAANQIMLKWHPEPITTFVIGRNVNYTNFCDT 66
Query: 62 ACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFET 121
C+FCAF + Y + E IL+K++ + + G E+ + NP+ + ++Y +
Sbjct: 67 YCRFCAFYRAPGHKEGYVLDDEVILKKIQETIDVGGTEILMQGGTNPDLTIDYYTDLLRN 126
Query: 122 IKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKI 181
IK+ PN+ + + + AEV ++ + E VL ++ +AG+DSMPGGGAEI EE R ++
Sbjct: 127 IKERFPNIWMHSFSPAEVWKIAEVSSMSVEEVLRELHEAGLDSMPGGGAEILTEETRLRV 186
Query: 182 CNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKE 241
K+ +W+ K+G ATM+ G E+ R H+ R++ Q ++
Sbjct: 187 SRLKITWEQWINAMKATKKVGMHGTATMVIGFGESFEERALHLQRVRDAQ-------DET 239
Query: 242 GGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALV 301
F AFI L+Q EN + K + + LK +AISR+ L+NIP+ ++ W T+G + +
Sbjct: 240 ECFTAFISWLFQPENTGMYKTKKLTPRDYLKNVAISRLFLDNIPNFQSSWVTMGPEVGKL 299
Query: 302 AQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
+ ++G ND T+ E++ SAAG + H + ++ I++AG + +R + Y I+ F
Sbjct: 300 SLQYGCNDFGSTMIEENVVSAAG--TTHKVNTNKILQLIREAGKIPAQRTTSYEIIRTF 356
>ref|NP_634519.1| (NC_003901) Biotin synthase [Methanosarcina mazei Goe1]
gb|AAM32191.1| (AE013493) Biotin synthase [Methanosarcina mazei Goe1]
Length = 376
Score = 182 bits (461), Expect = 7e-45
Identities = 114/360 (31%), Positives = 187/360 (51%), Gaps = 19/360 (5%)
Query: 2 DFLEKVLDNQVTESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICAD 61
D +E+ + T+ L+ L + + L AD +R V + VNR++N ++ C
Sbjct: 8 DLIERAHRGKTTKEDALL-LLEVPPFELFRFADELRDLAAGDTVTYVVNRNINFTSRCTG 66
Query: 62 ACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFET 121
+C FCAF + + +S+EEI+EKV+ + EV I P+ ++Y + E
Sbjct: 67 SCGFCAF----RTDDGKVLSIEEIMEKVREAEKANATEVCIQGGLLPDVGLDFYQGIVEA 122
Query: 122 IKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKI 181
IK E P +H+ + + EV+ S P + L + ++G+D+MPG AEI + +R+ I
Sbjct: 123 IKAEFPEMHVHSFSPMEVYHASRISEIPVKESLRRLKRSGLDTMPGTAAEILSDRVRKII 182
Query: 182 CNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKE 241
C K+ ++ W+E+ H G + ATM++GH+E RI+HML I++IQ +
Sbjct: 183 CPAKLNTAEWIEVVTQAHAAGIPTTATMMYGHVETPEERINHMLTIREIQ-------KET 235
Query: 242 GGFNAFIPLLYQKENNYLNVEK------SPSAIEILKTIAISRILLN-NIPHIKAYWATL 294
GG F+PL + NN + + + +E LK A+SRIL + ++ +I+A W L
Sbjct: 236 GGITEFVPLPFMPYNNPVGEKMIKEGRYATPGLEDLKVYAVSRILFHGHVDNIQASWVKL 295
Query: 295 GLNLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLY 354
G A + G NDL GT+ ESI +AGA + ++L + I AG + ER +LY
Sbjct: 296 GKKFAQFSLHCGVNDLGGTLMEESISRSAGACHGEMITVDELEWMIHGAGRIPKERTTLY 355
>ref|NP_248435.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58826|YE31_METJA Hypothetical protein MJ1431
pir||F64478 hypothetical protein MJ1431 - Methanococcus jannaschii
gb|AAB99441.1| (U67584) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 359
Score = 182 bits (461), Expect = 7e-45
Identities = 113/355 (31%), Positives = 189/355 (52%), Gaps = 21/355 (5%)
Query: 16 KELVRLYDYD--LYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRK 73
KE + L++ + ++ L + AD +R+ IV + VNR++N +NIC C+FCAF A+
Sbjct: 14 KEALELFEDNEIIFELFKFADSLRREEVGDIVTYVVNRNINFTNICVGNCRFCAFRANEN 73
Query: 74 NPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMP---NLH 130
+ + Y + ++EI ++ + G EV I +P + ++ + + + ++H
Sbjct: 74 DKHAYFLDIDEIAKRAVEAKKFGCTEVCIQGGLHPKIDTYYQAEILKAVHEATKPYGDIH 133
Query: 131 LKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSR 190
+ A + EV+F + + L+ + + G++SMPG AEI D++IR ++C K+ +
Sbjct: 134 IHAFSPMEVYFGAENAGLDIKEALKILKENGLNSMPGTAAEILDDDIRAELCPNKIKTKE 193
Query: 191 WLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPL 250
W+ I HKLG + ATM++GHIE H ++H+ IK+IQ N GF F+PL
Sbjct: 194 WIYIIKEAHKLGIPTTATMMYGHIEEYKHWVNHLFIIKEIQEETN-------GFTEFVPL 246
Query: 251 LYQKENNYLNVEKSPSA------IEILKTIAISRILLNN-IPHIKAYWATLGLNLALVAQ 303
+ + Y + K A IE LK A+SRI+ I +I+A W LG + VA
Sbjct: 247 SFM--HKYAPIYKEGKAKAGATGIEDLKVFAVSRIIFKGLIKNIQASWVKLGKKMVQVAL 304
Query: 304 EFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQ 358
GAND+ GT+ ESI +AGA+ + E++ IK G + ER +LY ++
Sbjct: 305 RCGANDVGGTLIEESISRSAGAEHGVYMSVEEIRDMIKRVGLIPKERTTLYKILE 359
>ref|NP_224709.1| (NC_000922) Fe-S oxidoreductase [Chlamydophila pneumoniae CWL029]
ref|NP_300568.1| (NC_002491) Fe-S oxidoreductase [Chlamydophila pneumoniae J138]
ref|NP_444791.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||G72069 conserved hypothetical protein CP0240 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD18653.1| (AE001636) Fe-S oxidoreductase [Chlamydophila pneumoniae CWL029]
gb|AAF38105.1| (AE002184) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98719.1| (AP002546) Fe-S oxidoreductase [Chlamydophila pneumoniae J138]
Length = 369
Score = 176 bits (447), Expect = 3e-43
Identities = 112/324 (34%), Positives = 173/324 (52%), Gaps = 12/324 (3%)
Query: 25 DLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEE 84
D TL AD++R+ VY++ +L P+N C +CKFC+F A +P + S ++
Sbjct: 43 DQRTLWNFADQVRKQRVGDTVYYSSTLYLYPTNFCDFSCKFCSFYAKPGDPKGWLYSPDD 102
Query: 85 ILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSV 144
+L++++N I EVHIV P+ + ++Y +F IK+ P +H+KA+TA E +LS
Sbjct: 103 LLQQIQN-IKTPITEVHIVGGCFPSCNLQYYSDLFTKIKEYDPQIHIKALTAIEYAYLSD 161
Query: 145 KFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKM 204
N VL + AG+DS+PGGGAEI ++IR + ++ SS +L IH H+LG
Sbjct: 162 LDNLSIRDVLLTLKDAGLDSIPGGGAEILVDKIRNFLAPKRLSSSDFLNIHKMAHQLGIH 221
Query: 205 SNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYLNVEKS 264
SN TML H E + HM++++ +Q ++ GF FI L + +ENN L
Sbjct: 222 SNITMLCYHKEGPEDLVTHMVKVRDLQ-------DETQGFKNFILLKFAQENNVLGKRLR 274
Query: 265 PS----AIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQ 320
S AI + +A++RI L+N ++KA W LG+ AL GANDL T E +
Sbjct: 275 KSGQGHAIPLKSLMAVARIFLDNFSNMKALWNYLGIEAALDLLSCGANDLSSTHMGEKVF 334
Query: 321 SAAGAKSRHGLEKEDLIFKIKDAG 344
A +K ++ E + I G
Sbjct: 335 QMASSKEPIKMDAEGMAALITQQG 358
>ref|NP_297084.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
pir||F81674 conserved hypothetical protein TC0710 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39523.1| (AE002339) conserved hypothetical protein [Chlamydia muridarum]
Length = 369
Score = 176 bits (445), Expect = 5e-43
Identities = 109/335 (32%), Positives = 178/335 (52%), Gaps = 12/335 (3%)
Query: 14 ESKELVRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRK 73
++ +L+ + D D L AD++R N VY++ +L P+N C C FC+F A
Sbjct: 32 QALQLLLIDDEDQQALWSFADQIRANRVGDTVYYSSTLYLYPTNFCQFNCTFCSFYAKPG 91
Query: 74 NPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKA 133
NP+ + + ++++ +K + + I E HIV+ P+ + +Y ++F IKQ P+LH+KA
Sbjct: 92 NPSGWFFTPDQLIRSIKETTSP-ITETHIVAGCYPSCNLAYYEELFTKIKQNFPDLHIKA 150
Query: 134 MTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLE 193
++A E +L+ N V+E + AG+DS+PGGGAEI +E+R + G++ S +L+
Sbjct: 151 LSAIEYAYLAKLENLSVREVMERLRIAGLDSIPGGGAEILVDEVRETLSRGRLSSQGFLD 210
Query: 194 IHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQ 253
IH H LG SNATML H E + H+ +++ +Q ++ GF FI L +
Sbjct: 211 IHRTAHSLGIPSNATMLCYHRETPEDMVTHLSKLRSLQ-------DETLGFKNFILLKFA 263
Query: 254 KENNYLNVE----KSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGAND 309
ENN L + +I IA++R+ L+N +IKA W LGL++AL GAND
Sbjct: 264 SENNALGKRLHKMTARHSIPPATIIAVARLFLDNFSNIKALWNYLGLDVALHLLSCGAND 323
Query: 310 LDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAG 344
T E + + +K ++ E + I G
Sbjct: 324 FSSTHLGEKVFQMSSSKEPIRMDIEGMAKLITQQG 358
>ref|NP_293790.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||G75564 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09653.1|AE001869_2 (AE001869) conserved hypothetical protein [Deinococcus radiodurans]
Length = 396
Score = 175 bits (444), Expect = 6e-43
Identities = 107/357 (29%), Positives = 177/357 (48%), Gaps = 5/357 (1%)
Query: 4 LEKVLDNQVTESKELVRLYDYDLYTLGEVADRMR-QNMHQKIVYFNVNRHLNPSNICADA 62
L++ + + EL LY L + VA +R Q +V F ++R++N +NIC
Sbjct: 17 LDRAAQGERLGADELESLYHLPLPAVAAVAHDLRMQRRDPDVVSFLIDRNINYTNICNVG 76
Query: 63 CKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETI 122
C FCAF R+ + Y + E+I K++ G + + NP ++Y + +
Sbjct: 77 CNFCAFYRTRRQSDSYTLDYEQISAKIRELEAVGGTRILLQGGVNPELGLDYYTGMLRHV 136
Query: 123 KQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKIC 182
K P + + A + EV F+ F + +L+ ++ AG+D +PG G EI ++++R+K
Sbjct: 137 KAHHPTIQIDAFSPEEVLFMEKSFGLSLDDLLDTLMDAGLDGLPGAGGEILEDDVRQKAA 196
Query: 183 NGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEG 242
++ S W I + G + ATM+ G E R+ H+L+I + Q K Q E
Sbjct: 197 PARIRSGDWFRIIDAAQRKGLYTIATMVIGFGETYAQRVSHLLKI-RAQQDKAQREYGGN 255
Query: 243 GFNAFIPLLYQKENNYLNVEKSPSAI--EILKTIAISRILLNNIPHIKAYWATLGLNLAL 300
GF F Q E+ L+ K+P A E L+ +A++RI L+N+P+++A W G +
Sbjct: 256 GFFGFALWTLQTEHTRLH-GKAPGATAHEYLQQLAVARIALDNLPNLQASWPAQGFKVGQ 314
Query: 301 VAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFI 357
A +GANDL T+ E++ SAA RH +LI DAGF R+S + +
Sbjct: 315 AALYYGANDLGSTMLEENVVSAAAGHDRHAATVRELIRIAVDAGFTPAIRNSRFEIL 371
>ref|NP_488169.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB75828.1| (AP003595) ORF_ID:alr4129~hypothetical protein [Nostoc sp. PCC
7120]
Length = 391
Score = 166 bits (419), Expect = 5e-40
Identities = 112/364 (30%), Positives = 185/364 (50%), Gaps = 17/364 (4%)
Query: 7 VLDNQVTESKELVRLYDYDLYTLGEV---ADRMRQNMHQKIVYFNVNRHLNPSNICADAC 63
+L + ++ + +V L D + + AD++RQ V + +NR++N +NIC C
Sbjct: 14 LLGDDISPQEGVVLLTQTDSGAIASIRATADKLRQQQAGDTVTYVINRNINFTNICEQHC 73
Query: 64 KFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNY-----SYEWYLKV 118
FCAF + + Y + I EK ++ +G E+ + +P S +YLK+
Sbjct: 74 SFCAFRRDDGDADAYWLDWAGIREKSHDAVQRGATEICMQGGLHPQAQIDGKSLPYYLKL 133
Query: 119 FETIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIR 178
ETIKQE P +HL A + EV F++ + V+ + AGV+S+PG AE+ D+E+R
Sbjct: 134 VETIKQEYPQIHLHAFSPQEVQFIARVDGLEYVDVISALQNAGVNSLPGTAAEVLDDEVR 193
Query: 179 RKICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVE 238
R +C K+ ++ WLEI HK+G + +T+L GHIE +I H+ +++ +Q + +
Sbjct: 194 RILCPEKINTATWLEIIGTAHKVGLHTTSTILSGHIETPEQKIGHLEKLRSLQ--QTAIN 251
Query: 239 NK-EGGFNAFIPLLYQKENNYLNVEK-----SPSAIEILKTIAISRILLNN-IPHIKAYW 291
+K FI L + + ++ + P + L A++RI L N IP+ + W
Sbjct: 252 HKYPARITEFIVLPFVGQEAPKSLRRRVGRDQPILADALLLGAVARIYLGNWIPNHQPSW 311
Query: 292 ATLGLNLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERD 351
LGL A A +G ND+ GT+ E I + AGA +E L I G +RD
Sbjct: 312 VKLGLAGATEALTWGCNDIGGTLMEEHITTMAGAVGGTCMEVATLQNAIASIGRPYQQRD 371
Query: 352 SLYN 355
+LY+
Sbjct: 372 TLYH 375
>ref|NP_215689.1| (NC_000962) hypothetical protein Rv1173 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335653.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
pir||E70875 hypothetical protein Rv1173 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA15850.1| (AL010186) hypothetical protein Rv1173 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45467.1| (AE006998) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
gb|AAL91922.1|AF479769_1 (AF479769) F420 biosynthesis protein FbiC [Mycobacterium bovis BCG]
Length = 856
Score = 166 bits (419), Expect = 5e-40
Identities = 103/336 (30%), Positives = 179/336 (52%), Gaps = 16/336 (4%)
Query: 26 LYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEEI 85
L + +AD +R+++ V F VNR++N +NIC C+FCAF+ + + + Y +S+ E+
Sbjct: 525 LEAVAALADSLRRDVVGDEVTFVVNRNINFTNICYTGCRFCAFAQRKGDADAYSLSVGEV 584
Query: 86 LEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSVK 145
++ ++ G EV + +P Y + +K +P++H+ A + E+ K
Sbjct: 585 ADRAWEAHVAGATEVCMQGGIDPELPVTGYADLVRAVKARVPSMHVHAFSPMEIANGVTK 644
Query: 146 FNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKMS 205
L + +AG+D++PG AEI D+E+R + GK+ +S W+EI H++G S
Sbjct: 645 SGLSIREWLIGLREAGLDTIPGTAAEILDDEVRWVLTKGKLPTSLWIEIVTTAHEVGLRS 704
Query: 206 NATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYLNV---- 261
++TM++GH+++ H + H+ ++ IQ ++ GGF F+PL + +N+ L +
Sbjct: 705 SSTMMYGHVDSPRHWVAHLNVLRDIQ-------DRTGGFTEFVPLPFVHQNSPLYLAGAA 757
Query: 262 EKSPSAIEILKTIAISRILLN-NIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQ 320
PS + A++RI+L+ I HI+ W LG+ V E GANDL GT+ E+I
Sbjct: 758 RPGPSHRDNRAVHALARIMLHGRISHIQTSWVKLGVRRTQVMLEGGANDLGGTLMEETIS 817
Query: 321 SAAGAKSRHGLEK--EDLIFKIKDAGFVAVERDSLY 354
AG S HG K +L+ + G A +R + Y
Sbjct: 818 RMAG--SEHGSAKTVAELVAIAEGIGRPARQRTTTY 851
>ref|NP_302048.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC30442.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
Length = 863
Score = 165 bits (418), Expect = 7e-40
Identities = 98/328 (29%), Positives = 174/328 (52%), Gaps = 12/328 (3%)
Query: 32 VADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEEILEKVKN 91
+AD +R+++ V F VNR++N +NIC C+FCAF+ + + + Y +S EE+ E+
Sbjct: 538 LADSLRRDVVGDDVTFVVNRNINFTNICYTGCRFCAFAQRKGDTDAYSLSREEVAERAWE 597
Query: 92 SYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSVKFNKPFE 151
++ +G EV + +P Y+ + +K +P++H+ A + E+ K
Sbjct: 598 AHVQGATEVCMQGGIDPELPVTGYVDLVRAVKTRVPSMHVHAFSPMEIANGVAKSGFSIR 657
Query: 152 LVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKMSNATMLF 211
L + +AG+D++PG AEI D+E+R + GK+ +S W+EI H++G S++TM++
Sbjct: 658 EWLISLREAGLDTIPGTAAEILDDEVRWVLTKGKLPTSMWIEIVTTAHEVGLRSSSTMMY 717
Query: 212 GHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYLNV----EKSPSA 267
GH++ H + H+ ++ IQ ++ GGF F+PL + +N+ L + P+
Sbjct: 718 GHVDGPRHWVAHLQVLRDIQ-------DRTGGFTEFVPLPFVHQNSPLYLAGAARPGPTH 770
Query: 268 IEILKTIAISRILLN-NIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQSAAGAK 326
+ A++RI+L+ I HI+ W LG+ GANDL GT+ E+I AG++
Sbjct: 771 RDNRAVHALARIMLHGRISHIQTSWVKLGVERTQAMLNGGANDLGGTLMEETISRMAGSE 830
Query: 327 SRHGLEKEDLIFKIKDAGFVAVERDSLY 354
+LI + G A +R + Y
Sbjct: 831 YGSAKTVAELIAIAEGIGRTARQRTTTY 858
>ref|NP_628596.1| (NC_003888) conserved hypothetical protein SCD6.07 [Streptomyces
coelicolor A3(2)]
emb|CAB88436.1| (AL353815) conserved hypothetical protein SCD6.07 [Streptomyces
coelicolor A3(2)]
Length = 867
Score = 159 bits (401), Expect = 6e-38
Identities = 97/328 (29%), Positives = 171/328 (51%), Gaps = 12/328 (3%)
Query: 32 VADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEEILEKVKN 91
+AD +R+++ V + V R++N +N+C C+FCAF+ R + + Y +SL+++ ++ +
Sbjct: 521 IADDVRRSVVGDDVTYIVTRNINFTNVCYTGCRFCAFAQRRTDADAYTLSLDQVADRAQQ 580
Query: 92 SYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSVKFNKPFE 151
++ G EV + +P+ Y + +K+ +P +H+ A + EV + +
Sbjct: 581 AWEVGAVEVCMQGGIHPDLPGTAYFDIARAVKERVPGMHVHAFSPMEVVNGATRTGLSIR 640
Query: 152 LVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKMSNATMLF 211
L +AG+DS+PG AEI D+E+R + GK+ ++ W+E+ H+LG S++TM++
Sbjct: 641 EWLTAAKEAGLDSVPGTAAEILDDEVRWILTKGKLPAATWIEVIETAHELGIRSSSTMMY 700
Query: 212 GHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFI--PLLYQKENNYLN--VEKSPSA 267
GH++ H + H+ + IQ + GGF F+ P ++ YL P+
Sbjct: 701 GHVDQPRHWLGHLRTLAGIQ-------RRTGGFTEFVTLPFIHTNAPVYLAGIARPGPTL 753
Query: 268 IEILKTIAISRILLN-NIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQSAAGAK 326
+ A++R+LL+ +IP+I+ W LG A GANDL GT+ E+I AG+
Sbjct: 754 RDNRAVTAMARLLLHPHIPNIQTSWVKLGTEGAAEMLRSGANDLGGTLMEETISRMAGSS 813
Query: 327 SRHGLEKEDLIFKIKDAGFVAVERDSLY 354
+DLI AG A R +LY
Sbjct: 814 YGSYKSVKDLIAVADAAGRPAKPRTTLY 841
>ref|NP_220286.1| (NC_000117) Fe-S cluster oxidoreduase [Chlamydia trachomatis]
pir||B71473 probable Fe-S cluster oxidoreduase - Chlamydia trachomatis
(serotype D, strain UW3/Cx)
gb|AAC68362.1| (AE001349) Fe-S cluster oxidoreduase [Chlamydia trachomatis]
Length = 350
Score = 157 bits (398), Expect = 1e-37
Identities = 105/346 (30%), Positives = 172/346 (49%), Gaps = 13/346 (3%)
Query: 13 TESKELVRLYDYD-LYTLGEVADRMRQNMH-QKIVYFNVNRHLNPSNICADACKFCAFSA 70
T +E +RL+ Y L L AD +R+ + Q + + ++ + N +NIC C FCAF
Sbjct: 7 TSFQEGLRLFLYSPLEELRIHADSLRKQRYPQNTITYVLDANPNYTNICKIDCAFCAFYR 66
Query: 71 HRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLH 130
++ + Y +S +E + ++ GIK V + +P ++ + K+E P+LH
Sbjct: 67 KPRSSDAYLLSFDEFRQLMQRYVQAGIKTVLLQGGVHPQIGIDYLETLVSITKKEFPSLH 126
Query: 131 LKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSR 190
+A E+ + E LE + +AG ++PGGGAEI E IR++I K+G
Sbjct: 127 PHFFSAVEIAHAAQISGISTEQALERLWEAGQRTIPGGGAEILSERIRKQISPKKMGPDG 186
Query: 191 WLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPL 250
W++ H H+LG S ATM+FGH+E+ + H+ ++ Q ++ GF +FIP
Sbjct: 187 WIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ-------DENPGFFSFIPW 239
Query: 251 LYQKENNYL--NVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGAN 308
Y+ N L V S + +A++RI L+N HI A W G + +GA+
Sbjct: 240 SYKPNNTALGRRVPHQASPELYYRILAVARIFLDNFDHIAASWFGEGKEEGVKGLFYGAD 299
Query: 309 DLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLY 354
D GTI ES+ G + ++++ + AGF VERD+ Y
Sbjct: 300 DFGGTILDESVHKCTGWDLQS--SEKEICAMLLQAGFTPVERDTFY 343
>ref|NP_225106.1| (NC_000922) Fe-S oxidoreductase [Chlamydophila pneumoniae CWL029]
ref|NP_300968.1| (NC_002491) Fe-S oxidoreductase [Chlamydophila pneumoniae J138]
ref|NP_445492.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||F72019 conserved hypothetical protein CP0955 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD19049.1| (AE001671) Fe-S oxidoreductase [Chlamydophila pneumoniae CWL029]
gb|AAF38736.1| (AE002253) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA99119.1| (AP002548) Fe-S oxidoreductase [Chlamydophila pneumoniae J138]
Length = 353
Score = 156 bits (394), Expect = 4e-37
Identities = 99/332 (29%), Positives = 164/332 (48%), Gaps = 12/332 (3%)
Query: 29 LGEVADRMRQNMH-QKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEEILE 87
L E AD +R+ + V + ++ + N +NIC C FCAF K+P+ Y +S +E+
Sbjct: 24 LQERADAIRKERYPSNEVTYVLDANPNYTNICKIDCTFCAFYRKPKSPDAYLLSFDEVRS 83
Query: 88 KVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSVKFN 147
++ + G+K V + +P ++ ++ QE P++H +A E+
Sbjct: 84 LLQRYVSSGVKTVLLQGGVHPGLGIDYLEELVRITVQEFPSIHPHFFSAVEIEHACRVSG 143
Query: 148 KPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKMSNA 207
E L+ + AG ++PGGGAEI E +R+ I K+ W+ +H H +G + A
Sbjct: 144 ISIEQGLQRLWDAGQRTIPGGGAEILSERVRKIISPKKMQPGGWINLHKLAHLMGFRTTA 203
Query: 208 TMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYL--NVEKSP 265
TM+FGH+EN + H+ ++ Q + GF +FIP Y+ N L NV +
Sbjct: 204 TMMFGHVENPEDILIHLQTLRDAQ-------DSCPGFYSFIPWSYKPGNTALRRNVPQQA 256
Query: 266 SAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQSAAGA 325
S + +A+ RI L+N H+ A W G +L A +GA+D G I ES+ A G
Sbjct: 257 SIETYYRILALGRIFLDNFDHVAASWFGEGKSLGAKALHYGADDFGGVILDESVHKATGW 316
Query: 326 KSRHGLEKEDLIFKIKDAGFVAVERDSLYNFI 357
+ +E++ I+ GF+ VER++ Y I
Sbjct: 317 SIQS--SEEEICNIIRSEGFIPVERNTFYQHI 346
>ref|NP_440146.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P72811|YG59_SYNY3 Hypothetical protein sll1659
pir||S74675 hypothetical protein sll1659 - Synechocystis sp. (strain PCC 6803)
dbj|BAA16826.1| (D90901) ORF_ID:sll1659~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 392
Score = 155 bits (392), Expect = 7e-37
Identities = 104/338 (30%), Positives = 165/338 (48%), Gaps = 12/338 (3%)
Query: 31 EVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEEILEKVK 90
+ DR+R+ + + V + VNR++N +NIC C FCAF Y ++ EI K K
Sbjct: 46 QYGDRLRRKLVGETVTYVVNRNINFTNICEQHCNFCAFRRDDGQTGAYWLTDSEIFNKTK 105
Query: 91 NSYNKGIKEVHIVSAHNPNY-----SYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSVK 145
+ +G E+ + NP S +Y+ + ETIK + P LHL + E+ F++ +
Sbjct: 106 GAVAQGATEICLQGGLNPQAKINGSSLAYYVNLVETIKGQFPQLHLHGFSPQEIQFIARQ 165
Query: 146 FNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKMS 205
+ VL + +G+DS+PG AE+ + +RR IC K+ S WLEI H+ G +
Sbjct: 166 DGLTYGEVLMALKFSGLDSLPGTAAEVLVDRVRRIICPEKIDSQTWLEIIGLAHRHGLPT 225
Query: 206 NATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYLNVEK-- 263
+T++ GH+E I H+ R+++ Q + + FI L + E ++ K
Sbjct: 226 TSTLMAGHVETPEEIITHLDRLRQRQQ-TSLAQGYAASITEFILLPFVGEKAPPSLRKRV 284
Query: 264 ---SPSAIEILKTIAISRILLNN-IPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESI 319
P + L+ +AI+R+ L I + + W LGL A A E+G NDL GT+ E I
Sbjct: 285 GRDQPDLDQALQIMAIARLYLGKWIVNHQPSWVKLGLTGATTALEWGCNDLGGTLMEEHI 344
Query: 320 QSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFI 357
+ AGAK L L I G +R +LY +
Sbjct: 345 TTMAGAKGGTCLTATQLQNAIISTGRPYQQRTTLYEHL 382
>ref|NP_147081.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||H72782 hypothetical protein APE0249 - Aeropyrum pernix (strain K1)
dbj|BAA79162.1| (AP000058) 340aa long hypothetical protein [Aeropyrum pernix]
Length = 340
Score = 154 bits (388), Expect = 2e-36
Identities = 106/341 (31%), Positives = 169/341 (49%), Gaps = 13/341 (3%)
Query: 19 VRLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPY 78
+ LY LG VA R+ + + V + VN +N +NIC C FC+F K+P Y
Sbjct: 1 MELYSAPAPLLGAVARRVTDLLTGRRVGYIVNMIMNYTNICVVGCTFCSFYRKPKHPEAY 60
Query: 79 EMSLEEILEKVKNSYNK-GIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPN-LHLKAMTA 136
++ E +V ++ K I++V +P E+Y + F IK E + + ++
Sbjct: 61 KLEAREAAAQVVEAWRKYRIRQVLFQGGVDPAIPIEYYEEAFRAIKSETGGEVAIHGLSV 120
Query: 137 AEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHA 196
E+ +LS V+E + AG+DS+PG GAEI + +RR I K + W+
Sbjct: 121 VEIEWLSKVSRMSVGEVVERLRDAGMDSVPGAGAEILSDRVRRIISPLKSSADTWIRTME 180
Query: 197 YWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKEN 256
+ G +ATM++GH+E R +H+L++ ++Q ++G AFI ++ EN
Sbjct: 181 TIMEKGLPISATMVYGHVETLEERAEHLLKLLELQ-------RRKGRIMAFIAWNFEPEN 233
Query: 257 NYL--NVEKSPSAIEILKTIAISRILL-NNIPHIKAYWATLGLNLALVAQEFGANDLDGT 313
N L + E+LKT+AI+RI+ I I+A W T G+ L E+GAND GT
Sbjct: 234 NELGRKIPYPAGGTELLKTVAIARIVFRGEIRWIQAGWLTAGVKLGQATLEYGANDWGGT 293
Query: 314 IEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLY 354
+ E + AG L + + I +AG+ VERD+ Y
Sbjct: 294 LYGEKVLPEAGVPLPK-LVRRSIERLIWEAGYEPVERDNWY 333
>ref|NP_296527.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
pir||D81735 conserved hypothetical protein TC0148 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39025.1| (AE002282) conserved hypothetical protein [Chlamydia muridarum]
Length = 354
Score = 153 bits (387), Expect = 3e-36
Identities = 99/325 (30%), Positives = 160/325 (48%), Gaps = 12/325 (3%)
Query: 33 ADRMRQNMH-QKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEEILEKVKN 91
AD +R++ + Q + + ++ + N +N+C C FCAF + + Y +S E E +
Sbjct: 28 ADSLRRDRYPQNTITYVLDANPNYTNVCKIDCSFCAFYRKPNSSDSYLLSFNEFREWMHR 87
Query: 92 SYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSVKFNKPFE 151
GIK V + +P ++ + KQE P+LH +A E+ + E
Sbjct: 88 YVELGIKTVLLQGGVHPKIGIDYLETLVSITKQEFPSLHPHFFSAVEISHAAQVSGISTE 147
Query: 152 LVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKMSNATMLF 211
L+ + AG ++PGGGAEI E+IR++I K+ W++ H H+LG S ATM+F
Sbjct: 148 QALKRLWDAGQRTVPGGGAEILSEKIRKRISPKKMYPDGWIQFHKLAHRLGFRSTATMMF 207
Query: 212 GHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYL--NVEKSPSAIE 269
GH+E+ + H+ ++ Q ++ GF +FIP Y+ N L V + S
Sbjct: 208 GHLESAEDILLHLQTLRDAQ-------DENPGFFSFIPWSYKPNNTALGRRVTQQASPEL 260
Query: 270 ILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQSAAGAKSRH 329
+ +AI+RI L+N HI A W G L +GA+D GTI ES+ G +
Sbjct: 261 YYRILAIARIFLDNFDHIAASWFGEGKEEGLQGLFYGADDFGGTILDESVHKCTGWDLQS 320
Query: 330 GLEKEDLIFKIKDAGFVAVERDSLY 354
++++ + AGF VERD+ Y
Sbjct: 321 --SEQEIRMMLSRAGFTPVERDTFY 343
>ref|NP_280642.1| (NC_002607) Vng1938c [Halobacterium sp. NRC-1]
gb|AAG20122.1| (AE005090) Vng1938c [Halobacterium sp. NRC-1]
Length = 500
Score = 116 bits (291), Expect = 4e-25
Identities = 100/361 (27%), Positives = 154/361 (41%), Gaps = 44/361 (12%)
Query: 31 EVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAF--------SAHRKNPNPYEMSL 82
E ADR R ++ V F N + N + C C FC F + H + +
Sbjct: 107 EAADRRRADVVGDDVTFVANLNNNVTTACNTGCLFCNFKDTAHRFETEHEAAHGGFTKTP 166
Query: 83 EEILEKVKNSYNKGIKEVHIVS----------AH-------NPNYSY---EWYLKVFETI 122
E V ++ +G+ EV VS AH +P+++Y E Y T
Sbjct: 167 AESKATVADAIQRGVSEVTSVSGLHPAFGLNEAHRDALDPDDPDHNYKPPEAYDTDPTTY 226
Query: 123 KQEMPNL-----HLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEI 177
++ + H+ ++T E H + ++ V E + AG+D++PG AEI +E+
Sbjct: 227 AAQIAAMSEAGAHVHSITPEEAHHAQRGVSWGYDEVYETLADAGLDTVPGTAAEILVDEV 286
Query: 178 RRKICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQV 237
R IC GK+ + W+ G + AT+++GH+EN HRI H+ I+ +Q + +
Sbjct: 287 RDVICPGKMTTDEWVAAMEAAADAGLGTTATIMYGHVENAAHRIHHLDVIRALQDRTHNI 346
Query: 238 ENKEGGFNAFIPLLYQKENNYLN----VEKSPSAIEILKTIAISRILLNNIPHIKAYWAT 293
F+PL + E L V+ S E IA+SR+ L+NI HI++ W
Sbjct: 347 -------TEFVPLSFIHEQTPLYERGVVDGGASDAEDELMIAVSRLFLDNIDHIQSSWVK 399
Query: 294 LGLNLALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSL 353
G L GA+D GTI E I AG + D I G VER +
Sbjct: 400 FGDAKGLALLNCGADDFMGTILSEEITKRAGGQHGEFRSVADYAEMISAIGRTPVERSTD 459
Query: 354 Y 354
Y
Sbjct: 460 Y 460
>ref|NP_247771.1| (NC_000909) biotin synthetase, putative (bioB) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58195|Y785_METJA Hypothetical protein MJ0785
pir||A64398 hypothetical protein homolog MJ0785 - Methanococcus jannaschii
gb|AAB98782.1| (U67523) biotin synthetase, putative (bioB) [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
Length = 375
Score = 58.2 bits (139), Expect = 1e-07
Identities = 79/346 (22%), Positives = 148/346 (41%), Gaps = 38/346 (10%)
Query: 8 LDNQVTESKELVRLYDYDLYT----LGEVADRMRQNMHQKIVYFNVNRHLNPSNICA--D 61
+ N + + E ++L+ D + L ++A R+R +KI + ++ +NIC
Sbjct: 40 IKNGLIDEDEALKLFKIDNWRDYLKLFDIASRVRDYFKKKI---EITSTIHITNICHVNP 96
Query: 62 ACKFCAFSAHRKNPN---PYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKV 118
C +C F+A P+ ++ EEI + GIK V SAH Y + ++
Sbjct: 97 KCLYCGFAAGTSKEGYYEPFRLTDEEIKKSAIAIEESGIKRVSCSSAH--GYQGKEVIRA 154
Query: 119 FETIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIR 178
+ +K + NL + A++ S+K ++ K G+D++ E +E +
Sbjct: 155 LKIVK-KYTNLEVLVNAGADLTEESIK----------ELKKYGIDTI-CCNLETINENLF 202
Query: 179 RKICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVE 238
+K+ G+ R + + +K + +L G E+ R++H+ +K + N E
Sbjct: 203 KKVKPGEELEDR-IRVCKLVNKYDIELSTGLLIGIGESYEDRVEHLFYLK---NELNVGE 258
Query: 239 NKEGGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNL 298
GFN + + + SA+E KTIAI+R++ NI I + T+G L
Sbjct: 259 IPIMGFNPY-------KGTPMENHPKCSALEQAKTIAITRLIFPNI-RITSPTPTIGAEL 310
Query: 299 ALVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAG 344
A GA+++ I + G + E+++ I D G
Sbjct: 311 VQFALFGGASNVATVIPKNHPMNVKGVGNPKTGNLEEVVKMIMDLG 356
>ref|NP_563376.1| (NC_003366) probable biotin synthetase [Clostridium perfringens]
dbj|BAB82166.1| (AP003194) probable biotin synthetase [Clostridium perfringens]
Length = 347
Score = 50.8 bits (120), Expect = 2e-05
Identities = 71/256 (27%), Positives = 106/256 (40%), Gaps = 30/256 (11%)
Query: 56 SNICADACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWY 115
+NIC C +C KN N Y +S EEI++ K + G K + + + Y+ E
Sbjct: 57 TNICKRNCMYCGLRRDNKNLNRYRLSHEEIIDFAKKAVGYGYKTLVLQGGEDDYYTVERL 116
Query: 116 LKVFETIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDE 175
+ + + LKA+ A LS+ +PFE E + KAG D E D
Sbjct: 117 VPIVK---------DLKALGVALT--LSIG-ERPFE-EYEALKKAGADRFL-LRIETTDR 162
Query: 176 EIRRKICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRI-DHMLRIKKIQSPK 234
E+ ++ G +R ++ KLG + L G KI + D +L K++
Sbjct: 163 ELYEELDPGMSHENR-IQCLKNLRKLGYEVGSGCLVGLPGQKIESLADDILFFKELDVDM 221
Query: 235 NQVENKEGGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLN--NIPHIKAYWA 292
N G FIP E+ L + LK +AI R+LL NIP A
Sbjct: 222 N-------GIGPFIP----NEDTPLKDAEGGQFELALKVMAIVRLLLPDINIPATTA-ME 269
Query: 293 TLGLNLALVAQEFGAN 308
TL ++A + GAN
Sbjct: 270 TLNKQGRVIALQCGAN 285
>ref|NP_623465.1| (NC_003869) Biotin synthase and related enzymes [Thermoanaerobacter
tengcongensis]
gb|AAM25069.1| (AE013140) Biotin synthase and related enzymes [Thermoanaerobacter
tengcongensis]
Length = 353
Score = 49.3 bits (116), Expect = 7e-05
Identities = 73/287 (25%), Positives = 108/287 (37%), Gaps = 38/287 (13%)
Query: 4 LEKVLDNQVTESKELVRLYDYDLYT-LGEVADRMRQNMHQKIVYFNVNRHLNP----SNI 58
+EK+ + K L+ L + + L + ADR+R+ Y HL SN
Sbjct: 15 IEKLEKQHSLDKKGLIMLLSMENPSELYKAADRVRKK------YVGDEVHLRGLIEFSNY 68
Query: 59 CADACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKV 118
C + C +C K Y M EEI+E K +K + + S + Y +
Sbjct: 69 CHNTCFYCGLRGPNKAIKRYRMEPEEIIECAKRGVEMELKTIVLQSGEDRYYKITTLCNI 128
Query: 119 FETIKQEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIR 178
E IK+ M A + K + ++ KAG D E + E+
Sbjct: 129 VEKIKE---------MDVAVTLIIGELSKKEY----AELKKAGADRYL-LRIETTNRELY 174
Query: 179 RKICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRI-DHMLRIKKIQSPKNQV 237
RK+ G +R L +LG L G + + D +L KKI +
Sbjct: 175 RKLHPGMSYENR-LRCLMDLRELGYEVGTGSLIGLPGQTLEMLADDLLFFKKINADML-- 231
Query: 238 ENKEGGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNI 284
G FIP EN L EK +LK IA+SR+LL +I
Sbjct: 232 -----GIGPFIPC----ENTPLEKEKGGDVNLVLKMIALSRLLLPDI 269
>ref|NP_348258.1| (NC_003030) Biotin synthase family enzyme [Clostridium
acetobutylicum]
gb|AAK79598.1|AE007672_5 (AE007672) Biotin synthase family enzyme [Clostridium
acetobutylicum]
Length = 350
Score = 45.8 bits (107), Expect = 8e-04
Identities = 80/297 (26%), Positives = 124/297 (40%), Gaps = 34/297 (11%)
Query: 17 ELVRLYDYDLYT--LGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKN 74
ELV L D + + + ADR+R+ + V+ + + SNIC C +C KN
Sbjct: 21 ELVTLLKDDTHNEEIYKAADRVREKYVGEEVH--LRGLIEFSNICKRNCMYCGLRRDNKN 78
Query: 75 PNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAM 134
Y + +EI+ K++ N G + V + S + Y+ E + I E+ L++ A+
Sbjct: 79 IKRYRLEPDEIIHLAKSAKNYGYQTVVLQSGEDDYYTVE----KMKYIVSEIKKLNM-AI 133
Query: 135 TAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEI 194
T LS+ K FE E+ K+G D E D+E+ K+ + K+ +
Sbjct: 134 T------LSIG-EKTFE-EYEEYRKSGADRYL-IRIETTDKELYEKL-DPKMSHENRINC 183
Query: 195 HAYWHKLGKMSNATMLFGHIENKIHRI-DHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQ 253
KLG + L G I + D +L K+I + G FIP
Sbjct: 184 LKNLRKLGYEVGSGCLVGLPNQTIESLADDILFFKEIDADMI-------GVGPFIP---- 232
Query: 254 KENNYLNVEKSPSAIEILKTIAISRILLN--NIPHIKAYWATLGLNLALVAQEFGAN 308
E+ L EK +K A+ R+LL NIP A +L N +A GAN
Sbjct: 233 NEDTPLGEEKGGEFFMSVKVTALIRLLLPDINIPATTA-MESLYPNGRSIALTSGAN 288
>ref|NP_229072.1| (NC_000853) thiH protein, putative [Thermotoga maritima]
pir||B72274 hypothetical protein TM1267 - Thermotoga maritima (strain MSB8)
gb|AAD36342.1|AE001782_3 (AE001782) thiH protein, putative [Thermotoga maritima]
Length = 473
Score = 44.3 bits (103), Expect = 0.002
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 2 DFLEKVLDNQVTESKELVRLYDYD----LYTLGEVADRMRQNMH-QKIVYFNVNRHLNPS 56
+ ++K LD E +E L + + L + E A +++ ++ +IV F L
Sbjct: 39 EIIQKSLDKNRLEPEETATLLNVEDPELLEEIFEAARTLKERIYGNRIVLF---APLYIG 95
Query: 57 NICADACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYL 116
N C + C +C F K ++ E++ E+VK ++G K + +V +PNYS E+
Sbjct: 96 NDCINDCVYCGFRVSNKVVERRTLTEEQLKEEVKALVSQGHKRLIVVYGEHPNYSPEFIA 155
Query: 117 KVFETI 122
+ + +
Sbjct: 156 RTIDIV 161
>ref|NP_614181.1| (NC_003551) Predicted enzyme related to thiamine biosynthesis
enzyme ThiH [Methanopyrus kandleri AV19]
gb|AAM02111.1| (AE010379) Predicted enzyme related to thiamine biosynthesis
enzyme ThiH [Methanopyrus kandleri AV19]
Length = 380
Score = 43.5 bits (101), Expect = 0.004
Identities = 73/355 (20%), Positives = 135/355 (37%), Gaps = 45/355 (12%)
Query: 20 RLYDYDLYTLGEVADRMRQNMHQKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYE 79
RL DL L + A+R+ + +V ++ N + + +C + C +C F +
Sbjct: 23 RLKGNDLLELMDRANRLTREKFGTVVSYSKNVFVPLTRLCRNRCAYCTFRREPEEVRSPY 82
Query: 80 MSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFE------TIK---------- 123
+S EE+ E V+ G KEV P Y+ L+ E T++
Sbjct: 83 LSPEEVFEIVEKGKEAGCKEVLFTFGERPEERYDEALEWLEEHGYSSTVEYLVDLCRRCV 142
Query: 124 ---QEMPNLHLKAMTAAEVHFLSVKFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRK 180
+P+ + +T E+ L ++N L++E + + +E +
Sbjct: 143 EEYDMLPHSNPGVITKREMRKLR-RWNASMGLMMEIL-----------SERLCEESGPHE 190
Query: 181 ICNGKVGSSRWLEIHAYWHKLGKMSNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENK 240
GK R L++ Y +L +L G E R+ + I+++ V+
Sbjct: 191 HSPGKRPEER-LKVLKYAGELKVPFTTGILIGIGETWEERVKTLEEIQRMHERYGHVQ-- 247
Query: 241 EGGFNAFIPLLYQKENNYLNVEKSPSAIEILKTIAISRILLNNIP-HIKAYWATLGLNLA 299
+ K + P+ ++L+T+A +R++L ++P + LA
Sbjct: 248 ----EVIVQNFRTKPGIPMEDHPEPTPADLLRTVATARLILPDVPVQVPPNLNRETGQLA 303
Query: 300 LVAQEFGANDLDGTIEIESIQSAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLY 354
L+A GAND G + + E E+L +D GF ER +Y
Sbjct: 304 LLA---GANDWGG---VSPVTKDYVNPEAPWPEIEELKRLTEDVGFRLRERLPIY 352
>ref|NP_229074.1| (NC_000853) biotin synthetase, putative [Thermotoga maritima]
pir||D72274 hypothetical protein TM1269 - Thermotoga maritima (strain MSB8)
gb|AAD36344.1|AE001782_5 (AE001782) biotin synthetase, putative [Thermotoga maritima]
Length = 348
Score = 43.1 bits (100), Expect = 0.005
Identities = 32/126 (25%), Positives = 58/126 (45%), Gaps = 5/126 (3%)
Query: 2 DFLEKVLDNQVTES--KELVRLYDYDLY-TLGEVADRMRQNMHQKIVYFNVNRHLNPSNI 58
+ LEK+ + T KE + + D L ++AD +R+ V+ + + SN+
Sbjct: 5 EILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVH--IRAIIEFSNV 62
Query: 59 CADACKFCAFSAHRKNPNPYEMSLEEILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKV 118
C C +C KN Y M+ EEI+E+ + + G K + + S +P Y + +
Sbjct: 63 CRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYYMPDVISDI 122
Query: 119 FETIKQ 124
+ IK+
Sbjct: 123 VKEIKK 128
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229,496,955
Number of Sequences: 1026957
Number of extensions: 9557111
Number of successful extensions: 27950
Number of sequences better than 1.0e-02: 52
Number of HSP's better than 0.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 27789
Number of HSP's gapped (non-prelim): 56
length of query: 360
length of database: 324,149,939
effective HSP length: 122
effective length of query: 238
effective length of database: 198,861,185
effective search space: 47328962030
effective search space used: 47328962030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)