BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645280|ref|NP_207450.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(383 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207450.1| (NC_000915) conserved hypothetical protein... 760 0.0
ref|NP_223319.1| (NC_000921) putative [Helicobacter pylori ... 687 0.0
ref|NP_281649.1| (NC_002163) hypothetical protein Cj0462 [C... 469 e-131
ref|NP_213540.1| (NC_000918) hypothetical protein [Aquifex ... 346 3e-94
ref|NP_225106.1| (NC_000922) Fe-S oxidoreductase [Chlamydop... 317 1e-85
ref|NP_628712.1| (NC_003888) conserved hypothetical protein... 311 1e-83
ref|NP_244009.1| (NC_002570) BH3143~unknown conserved prote... 310 1e-83
ref|NP_220286.1| (NC_000117) Fe-S cluster oxidoreduase [Chl... 299 3e-80
ref|NP_069226.1| (NC_000917) conserved hypothetical protein... 296 4e-79
ref|NP_296527.1| (NC_002620) conserved hypothetical protein... 292 4e-78
ref|NP_293790.1| (NC_001263) conserved hypothetical protein... 265 5e-70
ref|NP_213448.1| (NC_000918) hypothetical protein [Aquifex ... 263 2e-69
ref|NP_559113.1| (NC_003364) conserved hypothetical protein... 263 2e-69
ref|NP_393693.1| (NC_002578) conserved hypothetical protein... 246 4e-64
ref|NP_614180.1| (NC_003551) Predicted enzyme related to t... 241 8e-63
ref|NP_616424.1| (NC_003552) conserved hypothetical protein... 239 5e-62
ref|NP_294089.1| (NC_001263) conserved hypothetical protein... 237 1e-61
ref|NP_275959.1| (NC_000916) conserved protein [Methanother... 237 2e-61
ref|NP_111898.1| (NC_002689) Uncharacterized conserved prot... 235 6e-61
ref|NP_634519.1| (NC_003901) Biotin synthase [Methanosarcin... 234 2e-60
ref|NP_069632.1| (NC_000917) conserved hypothetical protein... 231 1e-59
ref|NP_069224.1| (NC_000917) conserved hypothetical protein... 227 2e-58
ref|NP_244278.1| (NC_002570) BH3411~unknown conserved prote... 221 1e-56
ref|NP_634520.1| (NC_003901) Biotin synthase [Methanosarcin... 220 2e-56
ref|NP_302048.1| (NC_002677) conserved hypothetical protein... 218 1e-55
ref|NP_248435.1| (NC_000909) conserved hypothetical protein... 217 2e-55
ref|NP_147081.1| (NC_000854) hypothetical protein [Aeropyru... 217 2e-55
ref|NP_616423.1| (NC_003552) conserved hypothetical protein... 216 3e-55
ref|NP_215689.1| (NC_000962) hypothetical protein Rv1173 [M... 216 4e-55
ref|NP_440146.1| (NC_000911) hypothetical protein [Synechoc... 208 7e-53
ref|NP_559112.1| (NC_003364) conserved hypothetical protein... 205 8e-52
ref|NP_147082.1| (NC_000854) hypothetical protein [Aeropyru... 204 1e-51
ref|NP_282514.1| (NC_002163) hypothetical protein Cj1368 [C... 202 7e-51
ref|NP_488169.1| (NC_003272) hypothetical protein [Nostoc s... 201 2e-50
ref|NP_628596.1| (NC_003888) conserved hypothetical protein... 197 1e-49
ref|NP_224709.1| (NC_000922) Fe-S oxidoreductase [Chlamydop... 188 1e-46
ref|NP_207448.1| (NC_000915) conserved hypothetical protein... 187 1e-46
ref|NP_223317.1| (NC_000921) putative [Helicobacter pylori ... 187 1e-46
gb|AAF04273.1|AF181880_2 (AF181880) unknown [Helicobacter p... 187 2e-46
ref|NP_219938.1| (NC_000117) Fe-S oxidoreductase [Chlamydia... 183 3e-45
ref|NP_297084.1| (NC_002620) conserved hypothetical protein... 182 6e-45
ref|NP_393695.1| (NC_002578) conserved hypothetical protein... 178 8e-44
ref|NP_111896.1| (NC_002689) Uncharacterized conserved prot... 177 1e-43
ref|NP_280642.1| (NC_002607) Vng1938c [Halobacterium sp. NR... 143 3e-33
emb|CAA76032.1| (Y16068) orf (HP0654) [Helicobacter pylori] 130 3e-29
ref|NP_614181.1| (NC_003551) Predicted enzyme related to t... 59 7e-08
ref|NP_634518.1| (NC_003901) Biotin synthase [Methanosarcin... 48 2e-04
ref|NP_616425.1| (NC_003552) biotin synthase [Methanosarcin... 48 2e-04
ref|NP_563376.1| (NC_003366) probable biotin synthetase [Cl... 45 0.001
ref|NP_229074.1| (NC_000853) biotin synthetase, putative [T... 44 0.003
ref|NP_623168.1| (NC_003869) Thiamine biosynthesis enzyme T... 43 0.007
>ref|NP_207450.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||H64601 conserved hypothetical protein HP0656 - Helicobacter pylori
(strain 26695)
gb|AAD07721.1| (AE000579) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 383
Score = 760 bits (1962), Expect = 0.0
Identities = 383/383 (100%), Positives = 383/383 (100%)
Query: 1 MARNVKGYASTLTWTITRNTLNFLWEQGFKMRINREEILDLMKNAPLKELGQRALRVKQR 60
MARNVKGYASTLTWTITRNTLNFLWEQGFKMRINREEILDLMKNAPLKELGQRALRVKQR
Sbjct: 1 MARNVKGYASTLTWTITRNTLNFLWEQGFKMRINREEILDLMKNAPLKELGQRALRVKQR 60
Query: 61 LHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGT 120
LHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGT
Sbjct: 61 LHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGT 120
Query: 121 QILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLK 180
QILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLK
Sbjct: 121 QILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLK 180
Query: 181 NAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEE 240
NAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEE
Sbjct: 181 NAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEE 240
Query: 241 DVVEHLQRVRDLQDETGGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFL 300
DVVEHLQRVRDLQDETGGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFL
Sbjct: 241 DVVEHLQRVRDLQDETGGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFL 300
Query: 301 DNIQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAGTSFCMNEAGMIELIEDI 360
DNIQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAGTSFCMNEAGMIELIEDI
Sbjct: 301 DNIQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAGTSFCMNEAGMIELIEDI 360
Query: 361 GSVAAKRNTAYEILKRYPAKAKV 383
GSVAAKRNTAYEILKRYPAKAKV
Sbjct: 361 GSVAAKRNTAYEILKRYPAKAKV 383
>ref|NP_223319.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71910 hypothetical protein jhp0601 - Helicobacter pylori (strain J99)
gb|AAD06182.1| (AE001492) putative [Helicobacter pylori J99]
Length = 353
Score = 687 bits (1772), Expect = 0.0
Identities = 348/353 (98%), Positives = 350/353 (98%)
Query: 31 MRINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAF 90
MRINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAF
Sbjct: 1 MRINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAF 60
Query: 91 KRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPT 150
KRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPT
Sbjct: 61 KRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPT 120
Query: 151 ITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSS 210
ITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAE+LSDRVRDVIAPKKLSS
Sbjct: 121 ITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEILSDRVRDVIAPKKLSS 180
Query: 211 DRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPN 270
DRWIEVHRMAHLCGIKSTATMMFGSVDNEEDV+EHLQRVRDLQDETGGFRAFILWSFQPN
Sbjct: 181 DRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVIEHLQRVRDLQDETGGFRAFILWSFQPN 240
Query: 271 NTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLG 330
NTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALL GANDLG
Sbjct: 241 NTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLSGANDLG 300
Query: 331 SVMMEENVVKAAGTSFCMNEAGMIELIEDIGSVAAKRNTAYEILKRYPAKAKV 383
SVMMEENVVKAAGTSFCM EA MIELIEDIGSVAAKRNTAYEILKRYPAKAKV
Sbjct: 301 SVMMEENVVKAAGTSFCMIEAEMIELIEDIGSVAAKRNTAYEILKRYPAKAKV 353
>ref|NP_281649.1| (NC_002163) hypothetical protein Cj0462 [Campylobacter jejuni]
pir||A81391 hypothetical protein Cj0462 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75100.1| (AL139075) hypothetical protein Cj0462 [Campylobacter jejuni]
Length = 348
Score = 469 bits (1207), Expect = e-131
Identities = 229/346 (66%), Positives = 282/346 (81%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
R++++E LDL+ +A L ELG+ A + K LHPE +TTF+VDRNINYTN+C +DC FCAF
Sbjct: 3 RLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDRNINYTNVCCIDCSFCAFY 62
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
R KE DAY+LS+EEI +KIEEL AIGGTQILFQGGVHP+LKI++YE LVS I + +P I
Sbjct: 63 RHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPKLKIEWYEELVSWIKEHYPNI 122
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
T+HGFSAVEI YI+K SK+S+ EVL+RL+ GL SIPGAGAEVLSDRVRD+IAP K +
Sbjct: 123 TVHGFSAVEIAYIAKASKISITEVLKRLQAKGLFSIPGAGAEVLSDRVRDIIAPNKCDTA 182
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
W+EVHR AH G+KSTATMMFG+V+N+E++++H + +R LQDETGGFRAFILWSFQ +N
Sbjct: 183 TWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFEHLRKLQDETGGFRAFILWSFQSDN 242
Query: 272 TPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
T L ++ P I K SSN+YLR LA R++LDN +N+QSSWVTQGS+IGQLAL FGANDLGS
Sbjct: 243 TALIQKHPEIMKQSSNKYLRLLALVRLYLDNFKNLQSSWVTQGSLIGQLALKFGANDLGS 302
Query: 332 VMMEENVVKAAGTSFCMNEAGMIELIEDIGSVAAKRNTAYEILKRY 377
MMEENVV AAG S+ MN+ MI LI +G AKRNTAYEIL+R+
Sbjct: 303 TMMEENVVSAAGASYRMNQDEMIRLIRSLGENPAKRNTAYEILERF 348
>ref|NP_213540.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||H70368 conserved hypothetical protein aq_789 - Aquifex aeolicus
gb|AAC06943.1| (AE000707) hypothetical protein [Aquifex aeolicus]
Length = 361
Score = 346 bits (887), Expect = 3e-94
Identities = 175/345 (50%), Positives = 240/345 (68%), Gaps = 5/345 (1%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
RI EE L L +NA LG A V+++ HP+++ TF+VDRN+NYTN+C CKFCAF
Sbjct: 18 RIYPEEALYLWENADFVTLGNLANFVRKKFHPDDIVTFVVDRNVNYTNVCIAGCKFCAFY 77
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
R ++DAYVL + I QK++EL+ GGT +L QGG++P L +++YE+++S I + FP +
Sbjct: 78 RRKSDEDAYVLDMDTILQKVKELVEWGGTTLLMQGGINPDLPLEFYEDMISQIKKHFPQV 137
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
IH FSA EI Y+SK KL ++EV+ RLK AGL SIPG GAE+LS VRD I+P K + +
Sbjct: 138 QIHCFSAPEIVYLSKKEKLPIEEVIRRLKKAGLMSIPGGGAEILSQEVRDKISPGKCTVE 197
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
W EVHR AH G+ +TATMMFG V++ E ++EHL+RVR +QDETGGF AFI W+F+ N
Sbjct: 198 EWEEVHRTAHRLGMTTTATMMFGHVESIEHIIEHLERVRKIQDETGGFTAFIPWTFKKGN 257
Query: 272 TPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
T E+ +++A+ YL+ LA SRI+LDN +NIQSS VTQ IG + L FGANDLGS
Sbjct: 258 T----ELDFVEEATPTYYLKVLALSRIYLDNFKNIQSSHVTQTMQIGLIGLHFGANDLGS 313
Query: 332 VMMEENVVKAAGTSFCMNEA-GMIELIEDIGSVAAKRNTAYEILK 375
VM+EENV+ + + + M+ I+ G + A+R+T Y I+K
Sbjct: 314 VMIEENVISSTNFKVRIPKVEEMVRAIKSAGFIPAQRDTYYNIIK 358
>ref|NP_225106.1| (NC_000922) Fe-S oxidoreductase [Chlamydophila pneumoniae CWL029]
ref|NP_300968.1| (NC_002491) Fe-S oxidoreductase [Chlamydophila pneumoniae J138]
ref|NP_445492.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||F72019 conserved hypothetical protein CP0955 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD19049.1| (AE001671) Fe-S oxidoreductase [Chlamydophila pneumoniae CWL029]
gb|AAF38736.1| (AE002253) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA99119.1| (AP002548) Fe-S oxidoreductase [Chlamydophila pneumoniae J138]
Length = 353
Score = 317 bits (813), Expect = 1e-85
Identities = 155/341 (45%), Positives = 230/341 (66%), Gaps = 2/341 (0%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
RI+ EE L+L ++P++ L +RA +++ +P N T+++D N NYTNIC +DC FCAF
Sbjct: 6 RISFEEGLELFVSSPIERLQERADAIRKERYPSNEVTYVLDANPNYTNICKIDCTFCAFY 65
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
R K DAY+LS++E+ ++ ++ G +L QGGVHP L IDY E LV Q+FP+I
Sbjct: 66 RKPKSPDAYLLSFDEVRSLLQRYVSSGVKTVLLQGGVHPGLGIDYLEELVRITVQEFPSI 125
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
H FSAVEI++ ++S +S+++ L+RL +AG +IPG GAE+LS+RVR +I+PKK+
Sbjct: 126 HPHFFSAVEIEHACRVSGISIEQGLQRLWDAGQRTIPGGGAEILSERVRKIISPKKMQPG 185
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
WI +H++AHL G ++TATMMFG V+N ED++ HLQ +RD QD GF +FI WS++P N
Sbjct: 186 GWINLHKLAHLMGFRTTATMMFGHVENPEDILIHLQTLRDAQDSCPGFYSFIPWSYKPGN 245
Query: 272 TPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
T L+ +P ++AS Y R LA RIFLDN ++ +SW +G +G AL +GA+D G
Sbjct: 246 TALRRNVP--QQASIETYYRILALGRIFLDNFDHVAASWFGEGKSLGAKALHYGADDFGG 303
Query: 332 VMMEENVVKAAGTSFCMNEAGMIELIEDIGSVAAKRNTAYE 372
V+++E+V KA G S +E + +I G + +RNT Y+
Sbjct: 304 VILDESVHKATGWSIQSSEEEICNIIRSEGFIPVERNTFYQ 344
>ref|NP_628712.1| (NC_003888) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
pir||T34636 conserved hypothetical protein SC10A7.33c - Streptomyces coelicolor
emb|CAB44543.1| (AL078618) conserved hypothetical protein [Streptomyces coelicolor
A3(2)]
Length = 399
Score = 311 bits (796), Expect = 1e-83
Identities = 157/346 (45%), Positives = 232/346 (66%), Gaps = 7/346 (2%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHP--ENLTTFIVDRNINYTNICFVDCKFCA 89
RI EE LDL ++APL LG A V++R + E++ T+I++RNINYTN+C CKFCA
Sbjct: 19 RITPEEALDLYRDAPLHALGAAADAVRRRRYAGTEHIATYIIERNINYTNVCVTACKFCA 78
Query: 90 FKRTLKE-KDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKF 148
F K+ K + ++I ++ E + +GGTQI+FQGG HP ++YYE + I ++F
Sbjct: 79 FYAAPKDTKKGWSRDLDDILRRCAETVELGGTQIMFQGGHHPDYGVEYYEEHFAAIKKEF 138
Query: 149 PTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKL 208
P + IH A E++++++ISK+S++E + R+ AGL S GAGAE+L +R R IAP K
Sbjct: 139 PQLVIHSLGASEVEHMARISKVSVEEAIRRIHAAGLDSFAGAGAELLPERPRKAIAPLKE 198
Query: 209 SSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQ 268
S +RW+E+ +AH G++ST+TM+ G+ + + +EHL+ +RD+QD TGGFRAFI +++Q
Sbjct: 199 SGERWLEIMEIAHGLGVESTSTMLMGTGETNAERIEHLRMIRDVQDRTGGFRAFIPYTYQ 258
Query: 269 PNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGAND 328
P N LK +A+ YLR +A +R+FLDN+ +IQ SW+T G +GQL+L +GA+D
Sbjct: 259 PENNHLKGR----TQATLFEYLRMIAIARVFLDNVAHIQGSWLTTGKEVGQLSLHYGADD 314
Query: 329 LGSVMMEENVVKAAGTSFCMNEAGMIELIEDIGSVAAKRNTAYEIL 374
LGS+M+EENVV +AG N +I+LI G V A+R T YE L
Sbjct: 315 LGSIMLEENVVSSAGAKHRSNRLEIIDLIRKAGRVPAQRATTYEHL 360
>ref|NP_244009.1| (NC_002570) BH3143~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB06862.1| (AP001517) BH3143~unknown conserved protein in others [Bacillus
halodurans]
Length = 370
Score = 310 bits (795), Expect = 1e-83
Identities = 154/349 (44%), Positives = 231/349 (66%), Gaps = 4/349 (1%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
R++ E+ + L ++ ++++G A ++ + HPE +TTF++ RN+NYTN C C+FCAF
Sbjct: 15 RLSMEDAVKLYESDEVEKMGAAANQIMLKWHPEPITTFVIGRNVNYTNFCDTYCRFCAFY 74
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
R K+ YVL E I +KI+E + +GGT+IL QGG +P L IDYY +L+ +I ++FP I
Sbjct: 75 RAPGHKEGYVLDDEVILKKIQETIDVGGTEILMQGGTNPDLTIDYYTDLLRNIKERFPNI 134
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
+H FS E+ I+++S +S++EVL L AGL S+PG GAE+L++ R ++ K++ +
Sbjct: 135 WMHSFSPAEVWKIAEVSSMSVEEVLRELHEAGLDSMPGGGAEILTEETRLRVSRLKITWE 194
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
+WI + G+ TATM+ G ++ E+ HLQRVRD QDET F AFI W FQP N
Sbjct: 195 QWINAMKATKKVGMHGTATMVIGFGESFEERALHLQRVRDAQDETECFTAFISWLFQPEN 254
Query: 272 TPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
T + + KK + YL+ +A SR+FLDNI N QSSWVT G +G+L+L +G ND GS
Sbjct: 255 TGMYK----TKKLTPRDYLKNVAISRLFLDNIPNFQSSWVTMGPEVGKLSLQYGCNDFGS 310
Query: 332 VMMEENVVKAAGTSFCMNEAGMIELIEDIGSVAAKRNTAYEILKRYPAK 380
M+EENVV AAGT+ +N +++LI + G + A+R T+YEI++ + K
Sbjct: 311 TMIEENVVSAAGTTHKVNTNKILQLIREAGKIPAQRTTSYEIIRTFEDK 359
>ref|NP_220286.1| (NC_000117) Fe-S cluster oxidoreduase [Chlamydia trachomatis]
pir||B71473 probable Fe-S cluster oxidoreduase - Chlamydia trachomatis
(serotype D, strain UW3/Cx)
gb|AAC68362.1| (AE001349) Fe-S cluster oxidoreduase [Chlamydia trachomatis]
Length = 350
Score = 299 bits (766), Expect = 3e-80
Identities = 153/347 (44%), Positives = 222/347 (63%), Gaps = 2/347 (0%)
Query: 28 GFKMRINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKF 87
G R + +E L L +PL+EL A ++++ +P+N T+++D N NYTNIC +DC F
Sbjct: 2 GSPARTSFQEGLRLFLYSPLEELRIHADSLRKQRYPQNTITYVLDANPNYTNICKIDCAF 61
Query: 88 CAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQK 147
CAF R + DAY+LS++E Q ++ + G +L QGGVHPQ+ IDY E LVS ++
Sbjct: 62 CAFYRKPRSSDAYLLSFDEFRQLMQRYVQAGIKTVLLQGGVHPQIGIDYLETLVSITKKE 121
Query: 148 FPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKK 207
FP++ H FSAVEI + ++IS +S ++ LERL AG +IPG GAE+LS+R+R I+PKK
Sbjct: 122 FPSLHPHFFSAVEIAHAAQISGISTEQALERLWEAGQRTIPGGGAEILSERIRKQISPKK 181
Query: 208 LSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSF 267
+ D WI+ H++AH G +STATMMFG V++ ED++ HLQ +RD QDE GF +FI WS+
Sbjct: 182 MGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQDENPGFFSFIPWSY 241
Query: 268 QPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGAN 327
+PNNT L +P +AS Y R LA +RIFLDN +I +SW +G G L +GA+
Sbjct: 242 KPNNTALGRRVP--HQASPELYYRILAVARIFLDNFDHIAASWFGEGKEEGVKGLFYGAD 299
Query: 328 DLGSVMMEENVVKAAGTSFCMNEAGMIELIEDIGSVAAKRNTAYEIL 374
D G +++E+V K G +E + ++ G +R+T Y L
Sbjct: 300 DFGGTILDESVHKCTGWDLQSSEKEICAMLLQAGFTPVERDTFYRPL 346
>ref|NP_069226.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||F69298 conserved hypothetical protein AF0390 - Archaeoglobus fulgidus
gb|AAB90841.1| (AE001077) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 355
Score = 296 bits (757), Expect = 4e-79
Identities = 157/345 (45%), Positives = 230/345 (66%), Gaps = 8/345 (2%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
+I +++ L+L + P+ +G+ A ++ ++ +L TF+ D NINYTNIC C+FCAF
Sbjct: 16 KITKKDALELF-SLPIHAVGRIADEIR-KVKCGDLVTFVNDTNINYTNICLSKCRFCAFY 73
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
K YVLS+EEI +K+ + +G TQI+ QGG++P L ++++E L I +F ++
Sbjct: 74 AREK---GYVLSHEEILRKVGYAVKMGATQIMLQGGMNPDLGLEWFEELFRKIKARFSSV 130
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
IH S EI +++K+ + S++EVL+RLK AGL S+PG GAE+L D VR I+P K SSD
Sbjct: 131 HIHSLSPPEIVFLAKLERSSIREVLDRLKAAGLDSLPGGGAEILVDSVRRKISPNKCSSD 190
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
W+ V AH + +TATMMFG V+++ D+VEHL ++R+LQ++TGGF AFI W+FQP N
Sbjct: 191 EWLRVMETAHSLNMPTTATMMFGHVESDGDIVEHLIKIRELQEKTGGFTAFIPWTFQPGN 250
Query: 272 TPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
T L EI + S RYL+ LA SRI L+N +NIQ+SW+TQG I L+L FGAND G
Sbjct: 251 TELYAEIK--RPVSPLRYLQVLAISRIVLNNFRNIQASWLTQGFEIATLSLFFGANDFGG 308
Query: 332 VMMEENVVKAAGTSFCMNE-AGMIELIEDIGSVAAKRNTAYEILK 375
M+EENVV+A G F + +++ ++ +G A R+T Y IL+
Sbjct: 309 TMLEENVVRATGKDFRPAKIEEIVKAVKAVGRPVALRDTYYNILE 353
>ref|NP_296527.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
pir||D81735 conserved hypothetical protein TC0148 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39025.1| (AE002282) conserved hypothetical protein [Chlamydia muridarum]
Length = 354
Score = 292 bits (748), Expect = 4e-78
Identities = 145/344 (42%), Positives = 222/344 (64%), Gaps = 2/344 (0%)
Query: 28 GFKMRINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKF 87
G RI+ +E L L ++PL+EL RA +++ +P+N T+++D N NYTN+C +DC F
Sbjct: 2 GSPSRISLQEGLQLFLSSPLEELRIRADSLRRDRYPQNTITYVLDANPNYTNVCKIDCSF 61
Query: 88 CAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQK 147
CAF R D+Y+LS+ E + + + +G +L QGGVHP++ IDY E LVS Q+
Sbjct: 62 CAFYRKPNSSDSYLLSFNEFREWMHRYVELGIKTVLLQGGVHPKIGIDYLETLVSITKQE 121
Query: 148 FPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKK 207
FP++ H FSAVEI + +++S +S ++ L+RL +AG ++PG GAE+LS+++R I+PKK
Sbjct: 122 FPSLHPHFFSAVEISHAAQVSGISTEQALKRLWDAGQRTVPGGGAEILSEKIRKRISPKK 181
Query: 208 LSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSF 267
+ D WI+ H++AH G +STATMMFG +++ ED++ HLQ +RD QDE GF +FI WS+
Sbjct: 182 MYPDGWIQFHKLAHRLGFRSTATMMFGHLESAEDILLHLQTLRDAQDENPGFFSFIPWSY 241
Query: 268 QPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGAN 327
+PNNT L + ++AS Y R LA +RIFLDN +I +SW +G G L +GA+
Sbjct: 242 KPNNTALGRRV--TQQASPELYYRILAIARIFLDNFDHIAASWFGEGKEEGLQGLFYGAD 299
Query: 328 DLGSVMMEENVVKAAGTSFCMNEAGMIELIEDIGSVAAKRNTAY 371
D G +++E+V K G +E + ++ G +R+T Y
Sbjct: 300 DFGGTILDESVHKCTGWDLQSSEQEIRMMLSRAGFTPVERDTFY 343
>ref|NP_293790.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||G75564 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09653.1|AE001869_2 (AE001869) conserved hypothetical protein [Deinococcus radiodurans]
Length = 396
Score = 265 bits (678), Expect = 5e-70
Identities = 147/355 (41%), Positives = 210/355 (58%), Gaps = 13/355 (3%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
R+ +E L+ + + PL + A ++ + ++ +F++DRNINYTNIC V C FCAF
Sbjct: 25 RLGADE-LESLYHLPLPAVAAVAHDLRMQRRDPDVVSFLIDRNINYTNICNVGCNFCAFY 83
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
RT ++ D+Y L YE+I KI EL A+GGT+IL QGGV+P+L +DYY ++ H+ PTI
Sbjct: 84 RTRRQSDSYTLDYEQISAKIRELEAVGGTRILLQGGVNPELGLDYYTGMLRHVKAHHPTI 143
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
I FS E+ ++ K LSL ++L+ L +AGL +PGAG E+L D VR AP ++ S
Sbjct: 144 QIDAFSPEEVLFMEKSFGLSLDDLLDTLMDAGLDGLPGAGGEILEDDVRQKAAPARIRSG 203
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDET------GGFRAFILW 265
W + A G+ + ATM+ G + V HL ++R QD+ GF F LW
Sbjct: 204 DWFRIIDAAQRKGLYTIATMVIGFGETYAQRVSHLLKIRAQQDKAQREYGGNGFFGFALW 263
Query: 266 SFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFG 325
+ Q +T L + P A+++ YL+ LA +RI LDN+ N+Q+SW QG +GQ AL +G
Sbjct: 264 TLQTEHTRLHGKAPG---ATAHEYLQQLAVARIALDNLPNLQASWPAQGFKVGQAALYYG 320
Query: 326 ANDLGSVMMEENVVKAAG--TSFCMNEAGMIELIEDIGSVAAKRNTAYEILKRYP 378
ANDLGS M+EENVV AA +I + D G A RN+ +EIL YP
Sbjct: 321 ANDLGSTMLEENVVSAAAGHDRHAATVRELIRIAVDAGFTPAIRNSRFEILS-YP 374
>ref|NP_213448.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||D70357 conserved hypothetical protein aq_648 - Aquifex aeolicus
gb|AAC06853.1| (AE000700) hypothetical protein [Aquifex aeolicus]
Length = 371
Score = 263 bits (673), Expect = 2e-69
Identities = 146/348 (41%), Positives = 215/348 (60%), Gaps = 8/348 (2%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
RIN+EE L L ++ L LG A + ++ + FIV+R IN TN+C C FCAF
Sbjct: 29 RINQEEALYLYRSNELTALGLLAEYINRKKNGM-YAYFIVNRQINPTNVCMYQCDFCAFG 87
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
+ AY +S EEI +K+EEL +GG ++ GG+ D Y ++V I ++FP I
Sbjct: 88 VKKSDPKAYEMSMEEILKKVEELYLMGGREVHIVGGIPSYWDYDKYVSIVREIKKRFPEI 147
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
I ++AVEI +++KIS S +EVL LK AGL ++PG GAE+ S+RVR +IAP K +++
Sbjct: 148 IIKAWTAVEIHHMAKISGKSYEEVLSELKEAGLDALPGGGAEIFSERVRKIIAPYKANAE 207
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
++EVHR+AH GI S ATM++G V+ E+ VEH++ +R LQDETGGF+ FI ++ P
Sbjct: 208 EYLEVHRVAHKLGIPSNATMLYGHVETLEERVEHMEMLRRLQDETGGFQVFIPLAYWPEG 267
Query: 272 TPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
T L + SS L+ +A SRI+LDN +I++ WVT G + Q+AL FGA+DL
Sbjct: 268 TRL-----GGTRTSSVDDLKTIAISRIYLDNFDHIKAYWVTLGEKVAQVALNFGADDLDG 322
Query: 332 VMMEENVVKAAGTSFCMNEA--GMIELIEDIGSVAAKRNTAYEILKRY 377
+ EE +V AAGT + ++ LI+ G A+R+T Y +++ Y
Sbjct: 323 TIQEEKIVHAAGTKSAYGHSVDKLVNLIKKAGKTPAERDTFYRVVRVY 370
>ref|NP_559113.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL63295.1| (AE009807) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 352
Score = 263 bits (673), Expect = 2e-69
Identities = 144/347 (41%), Positives = 218/347 (62%), Gaps = 9/347 (2%)
Query: 35 REEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTL 94
REEI +L+K L ELG+RA +++RL+ + + TFI + +NYTN+C V C FCAF R
Sbjct: 11 REEIEELLKT-DLWELGRRAYEIRRRLYGD-VATFIPNMVLNYTNVCVVGCSFCAFYRPP 68
Query: 95 KEKDAYVLSYEEIDQKIEELLA-IGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTITI 153
+ ++AY S E+ +++ E+ A G Q+L QGGV+P++ I+Y+E L I K P I I
Sbjct: 69 RHREAYTYSVEDAVKRVLEVDARYGIRQVLIQGGVNPEIGIEYFEGLFRAIKSKAPHIAI 128
Query: 154 HGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRW 213
H S +E++Y+++ + S +E+LERLK AG+ S+PG G E+L D VR +I+PKK+ S+ W
Sbjct: 129 HALSPLEVEYLARRERASYREILERLKEAGMESMPGGGGEILVDEVRKIISPKKIDSETW 188
Query: 214 IEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNNTP 273
+ + AH GI S+ATMM+G V++ D+ EHL ++ LQ +TGGF AFI W+F+P +
Sbjct: 189 LRIMEEAHKLGIPSSATMMYGHVESLRDIAEHLYKIAQLQAKTGGFMAFIAWNFEPGTSE 248
Query: 274 LKEEIPSIKKASSNRYLRYLACSRIFLDN-IQNIQSSWVTQGSMIGQLALLFGANDLGSV 332
L +IP K +S LR +A +RI + I +IQ+ W+T G QLAL FGA+D G
Sbjct: 249 LGRKIPHPK--TSATLLRMVAVARIVFNGLIPHIQAGWLTAGPETAQLALYFGADDFGGT 306
Query: 333 MMEENVV--KAAGTSFCMNEAGMIELIEDIGSVAAKRNTAYEILKRY 377
+ +E V+ K A E +I +I G A+R+ Y I++ +
Sbjct: 307 LYDEKVLEWKRAEAPIDKKE-DVIAIIRGTGFRPAERDNLYRIVRYF 352
>ref|NP_393693.1| (NC_002578) conserved hypothetical protein [Thermoplasma
acidophilum]
emb|CAC11361.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 365
Score = 246 bits (627), Expect = 4e-64
Identities = 124/347 (35%), Positives = 218/347 (62%), Gaps = 3/347 (0%)
Query: 33 INREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKR 92
++ ++I+ + A + +LG+ A ++ +++ N +F+ + +NYTNIC V CKFCAF R
Sbjct: 20 LDEDDIVYMYDEADVNDLGKLARKITEKISG-NRVSFVSNIILNYTNICNVRCKFCAFYR 78
Query: 93 TLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTIT 152
T KE DAY ++ +++ ++I + +G Q+L QGGV+P L +DYY ++ I ++FP +
Sbjct: 79 TGKEDDAYTMTPDQVIEEIRKYYPLGIKQVLIQGGVNPNLDLDYYIDVFRKIRKEFPDVG 138
Query: 153 IHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDR 212
I+G S EI++IS+ +++S ++ + L++AGL +IPGAGAE+L + +R + S +
Sbjct: 139 INGLSTAEINFISRKARMSYEDTISVLRDAGLETIPGAGAEILDEDIRVALGRPSGSGKQ 198
Query: 213 WIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNNT 272
W+E+ AH G+K++ATM++G ++ + HL +RDLQ + GF +F W+ +P+NT
Sbjct: 199 WLEIMETAHRIGVKTSATMVYGHIEKSINKAHHLIAIRDLQKKYHGFLSFTAWNMEPDNT 258
Query: 273 PLKEEIPSIKKASSNRYLRYLACSRIFLD-NIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
L+ E ++ + +R +A SRI L+ ++ IQSSW+T G +GQLA+++G+ND G
Sbjct: 259 QLQREGILKYRSQAEDVIRNVAISRIVLNYHLPIIQSSWLTNGVEMGQLAIIYGSNDWGG 318
Query: 332 VMMEENVVKAAGTSF-CMNEAGMIELIEDIGSVAAKRNTAYEILKRY 377
+ +E V+ A G + + +I I D+G V +R+ Y +K Y
Sbjct: 319 TIYDERVIPATGKQVGNLRKEIIIRSIRDLGMVPVERDNLYRTVKVY 365
>ref|NP_614180.1| (NC_003551) Predicted enzyme related to thiamine biosynthesis
enzyme ThiH [Methanopyrus kandleri AV19]
gb|AAM02110.1| (AE010379) Predicted enzyme related to thiamine biosynthesis
enzyme ThiH [Methanopyrus kandleri AV19]
Length = 369
Score = 241 bits (616), Expect = 8e-63
Identities = 119/313 (38%), Positives = 189/313 (60%), Gaps = 3/313 (0%)
Query: 68 TFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGG 127
TF+V+RNIN+TN+C C+FCAF+R + DAY ++ EE+ ++ E G T++ QGG
Sbjct: 57 TFVVNRNINFTNVCINRCRFCAFRRDPDDPDAYRMTPEEVGERAAEARDAGATEVCLQGG 116
Query: 128 VHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSI 187
+HP+ +YY ++ I + P I +HG+S +E+ Y +K++ +++VL LK AGL S+
Sbjct: 117 LHPEATFEYYLEMLDEIKSQAPDIHVHGYSPMEVKYCAKLAGEDIEDVLRELKRAGLDSM 176
Query: 188 PGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQ 247
PG AE+ S VR + P KL +D W + R+AH GI +T TMM+G +D+ D ++H++
Sbjct: 177 PGTAAEIFSPEVRKRLCPDKLEADEWEHIIRIAHELGIPTTCTMMYGHIDSPRDWIDHMK 236
Query: 248 RVRDLQDETGGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDN-IQNI 306
R+R +Q++TGGF F+ SF +N P+ + S + A +R++ I NI
Sbjct: 237 RLRGIQEDTGGFTEFVPLSFVHSNAPIYRRGGARPGVSGMTDVLVHAVARLYFGPLIPNI 296
Query: 307 QSSWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAGTS--FCMNEAGMIELIEDIGSVA 364
Q+SWV G + Q+ L GANDLG +MEEN+ + AG + + ++E+I + G
Sbjct: 297 QASWVKLGVKLAQMTLHAGANDLGGTLMEENISREAGATEGEQLEPEEIVEIIREAGFTP 356
Query: 365 AKRNTAYEILKRY 377
+R T YE +K Y
Sbjct: 357 VQRTTLYEPVKVY 369
>ref|NP_616424.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04904.1| (AE010818) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 375
Score = 239 bits (609), Expect = 5e-62
Identities = 135/360 (37%), Positives = 209/360 (57%), Gaps = 25/360 (6%)
Query: 24 LWEQGFKMRINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFV 83
L E+ ++ + +E+ L L++ P EL + A ++ L + T++V+RNIN+T+ C
Sbjct: 9 LMERAYQGKCTKEDALQLLEVPPF-ELFRFADELRD-LAVGDTVTYVVNRNINFTSRCVG 66
Query: 84 DCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSH 143
C FCAF+ + VLS EEI +K+ + T++ QGG+ P++ +D+Y+ +
Sbjct: 67 TCGFCAFRTN----NGKVLSIEEIMEKVRDAEKANATEVCIQGGLLPEVGLDFYQGIAEA 122
Query: 144 IAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVI 203
I +FP + IH FS +E+ + S+IS++ +KE L RLK +GL ++PG AE+LSDRVR +I
Sbjct: 123 IKAEFPEMHIHSFSPMEVYHASRISEIPVKEALRRLKRSGLDTMPGTAAEILSDRVRKII 182
Query: 204 APKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFI 263
P KL + W+EV R AH GI +TATMM+G V+ E+ ++H+ +RD+Q ETGG F+
Sbjct: 183 CPSKLKTAEWVEVVRQAHAAGIPTTATMMYGHVETREERIDHMLIIRDIQKETGGITEFV 242
Query: 264 LWSFQPNNTPLKEEIPSIKKASSNRY-------LRYLACSRI-FLDNIQNIQSSWVTQGS 315
F P N P+ E K RY L+ A SRI F ++ NIQ+SWV G
Sbjct: 243 PLPFMPYNNPVGE-----KMIREGRYATPGLEDLKIYAVSRILFHGHVDNIQASWVKLGK 297
Query: 316 MIGQLALLFGANDLGSVMMEENVVKAAGTSFCMNEAGMIE----LIEDIGSVAAKRNTAY 371
+ Q +L G NDLG +MEE++ ++AG C E ++ +I G + +R T Y
Sbjct: 298 KLAQFSLHCGTNDLGGTLMEESISRSAGA--CHGEMITVDELEWMIHGAGRIPKERTTLY 355
>ref|NP_294089.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||A75527 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF09948.1|AE001897_1 (AE001897) conserved hypothetical protein [Deinococcus radiodurans]
Length = 376
Score = 237 bits (605), Expect = 1e-61
Identities = 121/346 (34%), Positives = 208/346 (59%), Gaps = 3/346 (0%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
R+ +E + L L L + A K++LH + + F+ + +TNIC+V C FCAF
Sbjct: 21 RLTFDEGMQLFHTRDLNTLMRLADLQKRQLHGDKVF-FVHSMRLEFTNICYVGCTFCAFA 79
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
E+ A+ +E+ ++ G T++ G HP K +YY +V + + +P +
Sbjct: 80 ARKGEERAWDYDPDEVVAQVGRRYLPGITELHMSSGHHPNHKWEYYPAMVQKLREAYPDL 139
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
+ F+A EI+++SKISK +EVL L+ AGLS++PG GAE+ +DRVR +A K+ ++
Sbjct: 140 QVKAFTAAEIEHLSKISKKPTREVLAELQAAGLSAMPGGGAEIFADRVRKQVAKNKVKAE 199
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
+W+++HR AH G+++ ATM++G ++ E+ ++H+ R+R+LQD+TGGF AFI +FQP
Sbjct: 200 KWLQIHREAHELGMRTNATMLYGHIETLEERLDHMHRLRELQDQTGGFHAFIPLAFQPLG 259
Query: 272 TPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
L + + + + LR LA +RI+LDN +I+ WV GS + Q++L +G +D+
Sbjct: 260 NTLAQNLGKTEYTTGLDDLRNLAVARIYLDNFPHIKGYWVMIGSELTQVSLDWGVSDIDG 319
Query: 332 VMMEENVVKAAGTS--FCMNEAGMIELIEDIGSVAAKRNTAYEILK 375
+ EE++ AAG + +++AGM+++I+ G V R+ Y L+
Sbjct: 320 TIQEEHIAHAAGATSPMALSQAGMVKMIQSAGRVPVLRDAYYNELE 365
>ref|NP_275959.1| (NC_000916) conserved protein [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
pir||F69209 conserved hypothetical protein MTH820 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85320.1| (AE000859) conserved protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 403
Score = 237 bits (604), Expect = 2e-61
Identities = 137/344 (39%), Positives = 204/344 (58%), Gaps = 6/344 (1%)
Query: 33 INREEILDLM--KNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAF 90
I +EE L LM L+ L A V++ + +T +I + NIN+TNIC C FCAF
Sbjct: 55 ITKEEALYLMGVTGRDLQALMIAADMVREAEAGDRIT-YIENWNINFTNICSGQCGFCAF 113
Query: 91 KRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPT 150
KR + D+Y L E I + E + G ++ QGG++P L +YE+L+ I +FP
Sbjct: 114 KRDAADGDSYYLETERILEIAAEAIEKGARELCIQGGLYPGLDTYFYEDLIRAIKSEFPD 173
Query: 151 ITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSS 210
+ +H FS +E+ Y ++ ++L+++E L+ LK AGL S+PG AE+L D VR VI P KLS+
Sbjct: 174 VHLHSFSPMEVYYGAQNAELTVEEALKILKRAGLGSMPGTAAEILDDDVRAVICPTKLST 233
Query: 211 DRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPN 270
W+EV AH GI +T TMM+G +D E VEH+ +R +Q++TGGF F+ F
Sbjct: 234 GEWVEVIETAHRVGIPTTCTMMYGHIDGPEHRVEHMDILRRIQEKTGGFTEFVPLPFMHP 293
Query: 271 NTPLKEEIPSIKKASSNRYLRYLACSRI-FLDNIQNIQSSWVTQGSMIGQLALLFGANDL 329
+ P+ E ++ A+ L+ A SR+ F I+NIQ+SWV G Q+ALL GAND+
Sbjct: 294 HAPIYREGLAMPGATGADDLKVYAISRLMFRGLIENIQASWVKLGFKFAQVALLSGANDI 353
Query: 330 GSVMMEENVVKAAGTSFCM--NEAGMIELIEDIGSVAAKRNTAY 371
G + EEN+ K+AG S + +I ++ DIG + A+R+T Y
Sbjct: 354 GGTLGEENISKSAGASHGVRTEPEEIIRVVRDIGRIPARRDTLY 397
>ref|NP_111898.1| (NC_002689) Uncharacterized conserved protein [Thermoplasma
volcanium]
dbj|BAB60547.1| (AP000996) hypothetical protein [Thermoplasma volcanium]
Length = 366
Score = 235 bits (600), Expect = 6e-61
Identities = 129/347 (37%), Positives = 210/347 (60%), Gaps = 3/347 (0%)
Query: 33 INREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKR 92
++ ++I+ + A + +LG+ A + ++ + ++ F+ + +NYTNIC V CKFCAF R
Sbjct: 20 LDEDDIVYMYDEADVNDLGKLARSITDKISGKRVS-FVSNIILNYTNICNVRCKFCAFYR 78
Query: 93 TLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTIT 152
E DAY ++ + + +I + G QIL QGGV+P L +DYY + I + F
Sbjct: 79 KSGEYDAYTMTPDGVIDEIRKYYPYGIRQILIQGGVNPNLDLDYYLTVFRKIRENFTEAG 138
Query: 153 IHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDR 212
I+G SA EI++ISK + L+ +E + +LK AGL +IPGAGAE+L + VR + + S +
Sbjct: 139 INGLSAAEINFISKKAHLTYEETILKLKEAGLETIPGAGAEILDEDVRVKLGRPRGSGRQ 198
Query: 213 WIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNNT 272
W+E+ AH G+K+TATM++G +++ D HL +R+LQ + GF +F W+ +P+NT
Sbjct: 199 WLEIMETAHRLGVKTTATMVYGHIESSMDKARHLISIRNLQKKYHGFLSFTPWNMEPDNT 258
Query: 273 PLKEEIPSIKKASSNRYLRYLACSRI-FLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
L++E +A + +R +A SRI F ++ IQSSW+T G +GQLA+L+GAND G
Sbjct: 259 ELQKEGILKYRAGAEDVIRNIAISRIVFNYDLPIIQSSWLTNGVEMGQLAILYGANDWGG 318
Query: 332 VMMEENVVKAAGTSF-CMNEAGMIELIEDIGSVAAKRNTAYEILKRY 377
+ +E V+ A G + + +I I+D+G V +R+ Y + Y
Sbjct: 319 TIYDEKVIPATGKRVGNLRKEIIIRSIKDLGMVPVERDNLYREIAVY 365
>ref|NP_634519.1| (NC_003901) Biotin synthase [Methanosarcina mazei Goe1]
gb|AAM32191.1| (AE013493) Biotin synthase [Methanosarcina mazei Goe1]
Length = 376
Score = 234 bits (596), Expect = 2e-60
Identities = 136/360 (37%), Positives = 206/360 (56%), Gaps = 25/360 (6%)
Query: 24 LWEQGFKMRINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFV 83
L E+ + + +E+ L L++ P EL + A ++ L + T++V+RNIN+T+ C
Sbjct: 9 LIERAHRGKTTKEDALLLLEVPPF-ELFRFADELRD-LAAGDTVTYVVNRNINFTSRCTG 66
Query: 84 DCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSH 143
C FCAF+ D VLS EEI +K+ E T++ QGG+ P + +D+Y+ +V
Sbjct: 67 SCGFCAFRTD----DGKVLSIEEIMEKVREAEKANATEVCIQGGLLPDVGLDFYQGIVEA 122
Query: 144 IAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVI 203
I +FP + +H FS +E+ + S+IS++ +KE L RLK +GL ++PG AE+LSDRVR +I
Sbjct: 123 IKAEFPEMHVHSFSPMEVYHASRISEIPVKESLRRLKRSGLDTMPGTAAEILSDRVRKII 182
Query: 204 APKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFI 263
P KL++ WIEV AH GI +TATMM+G V+ E+ + H+ +R++Q ETGG F+
Sbjct: 183 CPAKLNTAEWIEVVTQAHAAGIPTTATMMYGHVETPEERINHMLTIREIQKETGGITEFV 242
Query: 264 LWSFQPNNTPLKEEIPSIKKASSNRY-------LRYLACSRI-FLDNIQNIQSSWVTQGS 315
F P N P+ E K RY L+ A SRI F ++ NIQ+SWV G
Sbjct: 243 PLPFMPYNNPVGE-----KMIKEGRYATPGLEDLKVYAVSRILFHGHVDNIQASWVKLGK 297
Query: 316 MIGQLALLFGANDLGSVMMEENVVKAAGTSFCMNEAGMIE----LIEDIGSVAAKRNTAY 371
Q +L G NDLG +MEE++ ++AG C E ++ +I G + +R T Y
Sbjct: 298 KFAQFSLHCGVNDLGGTLMEESISRSAGA--CHGEMITVDELEWMIHGAGRIPKERTTLY 355
>ref|NP_069632.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||F69349 conserved hypothetical protein AF0798 - Archaeoglobus fulgidus
gb|AAB90440.1| (AE001049) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 338
Score = 231 bits (588), Expect = 1e-59
Identities = 133/341 (39%), Positives = 197/341 (57%), Gaps = 19/341 (5%)
Query: 40 DLMKNAPLKELGQRALRVKQRLHPE---NLTTFIVDRNINYTNICFVDCKFCAFKRTLKE 96
DL+KN R+ L E + T++V+RNIN+T+IC DCKFC+F+ K
Sbjct: 10 DLLKNP------YETFRIADELRRELVGDTVTYVVNRNINFTDICINDCKFCSFRNRKK- 62
Query: 97 KDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGF 156
Y+LS +EI QK+EE + G T++ QGG+ P +D+Y +++ + I IH F
Sbjct: 63 ---YLLSLDEIKQKVEEAVEFGCTELCIQGGLLPDADLDFYLSILQAVRDVDKKIHIHAF 119
Query: 157 SAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEV 216
S +E+ + ++ S ++++EVL+ LK GL S+PG AE+L D +R +I P+KL + W+EV
Sbjct: 120 SPMEVVHAARNSGMTVEEVLKELKKEGLGSMPGTAAEILDDSIRALICPRKLKTAEWVEV 179
Query: 217 HRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNNTPLKE 276
+ AH GI +TAT+M+G +D E + HL ++ +Q ETGG I F N L
Sbjct: 180 IKTAHRVGIPTTATIMYGHIDTWEHRINHLLLIKKIQQETGGITELIPLPFMSKNNELGR 239
Query: 277 EIPSIKKASSNRYLRYLACSRIFL-DNIQNIQSSWVTQGSMIGQLALLFGANDLGSVMME 335
K +S L +A +RI L I+NIQ+SWV G + Q AL GANDLG +ME
Sbjct: 240 ---YAKGSSGFDDLLMIAIARILLYPEIKNIQASWVKMGQKLAQAALHVGANDLGGTLME 296
Query: 336 ENVVKAAGTSF--CMNEAGMIELIEDIGSVAAKRNTAYEIL 374
EN+ K+AG + M+ + ELI+ G V +R+T Y IL
Sbjct: 297 ENISKSAGATSGEFMHPEELRELIKIAGRVPKQRDTLYNIL 337
>ref|NP_069224.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||D69298 conserved hypothetical protein AF0388 - Archaeoglobus fulgidus
gb|AAB90843.1| (AE001077) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 306
Score = 227 bits (579), Expect = 2e-58
Identities = 124/311 (39%), Positives = 190/311 (60%), Gaps = 10/311 (3%)
Query: 69 FIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGV 128
F+V+R+INYT+IC C CAF ++ Y+LS EEI +K+ E+ I T++ GG
Sbjct: 3 FVVNRHINYTDICVAKCPLCAFNN----REGYLLSPEEILRKVREVDGI--TEVHIVGGH 56
Query: 129 HPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIP 188
+P++ ++Y+E + I ++ P + I +A E+ Y +K K+S++E L RLK+AGL ++P
Sbjct: 57 NPEVGVEYFEEVFRRIKREKPEVVIKALTATEVYYYAKKEKMSIREFLSRLKDAGLQAMP 116
Query: 189 GAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQR 248
G GAE+L D VR I+P K SSD W+ V ++AH GIKS ATM+FG V+ HL R
Sbjct: 117 GGGAEILVDSVRRKISPNKCSSDEWLRVMKIAHELGIKSNATMLFGHVEEIRHRAIHLYR 176
Query: 249 VRDLQDETGGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQS 308
+R LQ++TGGF +FI + P N PL + + +K + L+ +A SRI LDN +++++
Sbjct: 177 LRKLQEKTGGFVSFIPLVYHPENNPLGKIVR--EKTNPVDILKTIAVSRIALDNFRSVRA 234
Query: 309 SWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAG--TSFCMNEAGMIELIEDIGSVAAK 366
WV G + ++AL FGAND+ ++EE V AAG T + ++E+ G +
Sbjct: 235 YWVMLGEKLTEVALRFGANDIDGTVVEEKVTHAAGAETPAGLTVERLVEICRSAGKRVGQ 294
Query: 367 RNTAYEILKRY 377
R+T ILK Y
Sbjct: 295 RDTFCNILKWY 305
>ref|NP_244278.1| (NC_002570) BH3411~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB07130.1| (AP001518) BH3411~unknown conserved protein in others [Bacillus
halodurans]
Length = 364
Score = 221 bits (563), Expect = 1e-56
Identities = 117/348 (33%), Positives = 205/348 (58%), Gaps = 7/348 (2%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
R+ E+ L L + + L + Q A +V + +++ FI + IN TN+C +C FC FK
Sbjct: 22 RLTIEDGLYLYETSDLLGVAQLANKVNSEKNGDHVY-FIENMYINPTNVCEANCSFCGFK 80
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
R ++ AY + E + + +EE + GG + + DYY + + + + FP +
Sbjct: 81 RKPGQEGAYTMDSETLLRYVEERWNDNIREFHIVGGHNTDVPFDYYLDTIRTLKKNFPQV 140
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
T+ ++ EI++ S+++ +S+KEVLE L AGL ++PG GAE+L++R R ++P K S+D
Sbjct: 141 TVKAYTGAEIEFFSRLAGISMKEVLEELIKAGLDTLPGGGAEILTERYRAKMSPDKASTD 200
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
+W+E H +AH G+K+ ATM++GS+++ E+ + H+ RVR LQD+T G+ FI + QP +
Sbjct: 201 QWLEAHEIAHGLGLKTHATMLYGSIESNEERLIHMDRVRQLQDKTNGYMVFIPLAMQPRS 260
Query: 272 TPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
+ ++ S+ +R +A SR+ LDNI +I++ W+ G + Q+AL FG++D+
Sbjct: 261 VKAGLK----RRTSAFDDMRTIAISRLMLDNIDHIKAYWINIGVQLTQMALTFGSDDIHG 316
Query: 332 VMMEENVVKAAG--TSFCMNEAGMIELIEDIGSVAAKRNTAYEILKRY 377
++EE + + G TS + +I LI+ +R+T Y I+K Y
Sbjct: 317 TLIEERISHSVGALTSQGITRDELIHLIKSANKTPVERDTFYNIIKSY 364
>ref|NP_634520.1| (NC_003901) Biotin synthase [Methanosarcina mazei Goe1]
gb|AAM32192.1| (AE013493) Biotin synthase [Methanosarcina mazei Goe1]
Length = 392
Score = 220 bits (561), Expect = 2e-56
Identities = 125/362 (34%), Positives = 213/362 (58%), Gaps = 15/362 (4%)
Query: 15 TITRNTLNFLWEQGFKMRINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRN 74
TI N + E+ +K + +E+ L L++ P EL + A ++ + + +++V+RN
Sbjct: 15 TIPENVI----ERAYKGKCTKEDALLLLEGNPF-ELFELANDLRA-IAAGDTVSYVVNRN 68
Query: 75 INYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKI 134
I TN C +C FCA++ + Y+LS EEI +K + G ++ QGG P+ +
Sbjct: 69 IYITNKCVGNCGFCAYRT----EKGYILSIEEILKKAGDARKAGAVEVCVQGGYTPEADM 124
Query: 135 DYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEV 194
++Y ++ + ++P + +H S +E++Y ++ S +S++E L RLK +GL S+ G AE+
Sbjct: 125 EFYLEVIESLKAEYPDLCLHALSPMEVNYAAETSGMSVEEALRRLKKSGLDSLTGTSAEI 184
Query: 195 LSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQD 254
LSDRVR +I P K+S+ +WI+ AH GI + AT+M+G V+ ++ ++H+ +R++Q
Sbjct: 185 LSDRVRKIICPSKISTQQWIDTVTAAHKAGISTNATIMYGHVETLKERLDHVFTIREIQK 244
Query: 255 ETGGFRAFILWSFQPNNTPLKEEIPSIKKASSN--RYLRYLACSRIFLDN-IQNIQSSWV 311
ETGGF I SF P N P+ E++ + K SS L+ +A SR+ L ++NIQ++WV
Sbjct: 245 ETGGFTELIPMSFLPYNNPVGEKMLASGKFSSTGLEDLQLIAISRVILHTYVKNIQATWV 304
Query: 312 TQGSMIGQLALLFGANDLGSVMMEENVVKAAGTSF--CMNEAGMIELIEDIGSVAAKRNT 369
G + Q+AL GANDLG +ME+ + A+G S ++ A +I+ G V +R+T
Sbjct: 305 KLGKKLAQVALQCGANDLGGTLMEDQISTASGGSHGEYVSPAEFEWMIKGAGRVPVQRDT 364
Query: 370 AY 371
Y
Sbjct: 365 LY 366
>ref|NP_302048.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
emb|CAC30442.1| (AL583922) conserved hypothetical protein [Mycobacterium leprae]
Length = 863
Score = 218 bits (554), Expect = 1e-55
Identities = 125/310 (40%), Positives = 181/310 (58%), Gaps = 5/310 (1%)
Query: 68 TFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGG 127
TF+V+RNIN+TNIC+ C+FCAF + + DAY LS EE+ ++ E G T++ QGG
Sbjct: 552 TFVVNRNINFTNICYTGCRFCAFAQRKGDTDAYSLSREEVAERAWEAHVQGATEVCMQGG 611
Query: 128 VHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSI 187
+ P+L + Y +LV + + P++ +H FS +EI S S++E L L+ AGL +I
Sbjct: 612 IDPELPVTGYVDLVRAVKTRVPSMHVHAFSPMEIANGVAKSGFSIREWLISLREAGLDTI 671
Query: 188 PGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQ 247
PG AE+L D VR V+ KL + WIE+ AH G++S++TMM+G VD V HLQ
Sbjct: 672 PGTAAEILDDEVRWVLTKGKLPTSMWIEIVTTAHEVGLRSSSTMMYGHVDGPRHWVAHLQ 731
Query: 248 RVRDLQDETGGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYL-ACSRIFL-DNIQN 305
+RD+QD TGGF F+ F N+PL + + ++R R + A +RI L I +
Sbjct: 732 VLRDIQDRTGGFTEFVPLPFVHQNSPL-YLAGAARPGPTHRDNRAVHALARIMLHGRISH 790
Query: 306 IQSSWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAGTSF--CMNEAGMIELIEDIGSV 363
IQ+SWV G Q L GANDLG +MEE + + AG+ + A +I + E IG
Sbjct: 791 IQTSWVKLGVERTQAMLNGGANDLGGTLMEETISRMAGSEYGSAKTVAELIAIAEGIGRT 850
Query: 364 AAKRNTAYEI 373
A +R T Y +
Sbjct: 851 ARQRTTTYAL 860
>ref|NP_248435.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58826|YE31_METJA Hypothetical protein MJ1431
pir||F64478 hypothetical protein MJ1431 - Methanococcus jannaschii
gb|AAB99441.1| (U67584) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 359
Score = 217 bits (553), Expect = 2e-55
Identities = 126/350 (36%), Positives = 210/350 (60%), Gaps = 8/350 (2%)
Query: 33 INREEILDLMK-NAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
I+++E L+L + N + EL + A ++ R ++ T++V+RNIN+TNIC +C+FCAF+
Sbjct: 11 ISKKEALELFEDNEIIFELFKFADSLR-REEVGDIVTYVVNRNINFTNICVGNCRFCAFR 69
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVS--HIAQK-F 148
+K AY L +EI ++ E G T++ QGG+HP++ Y ++ H A K +
Sbjct: 70 ANENDKHAYFLDIDEIAKRAVEAKKFGCTEVCIQGGLHPKIDTYYQAEILKAVHEATKPY 129
Query: 149 PTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKL 208
I IH FS +E+ + ++ + L +KE L+ LK GL+S+PG AE+L D +R + P K+
Sbjct: 130 GDIHIHAFSPMEVYFGAENAGLDIKEALKILKENGLNSMPGTAAEILDDDIRAELCPNKI 189
Query: 209 SSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQ 268
+ WI + + AH GI +TATMM+G ++ + V HL ++++Q+ET GF F+ SF
Sbjct: 190 KTKEWIYIIKEAHKLGIPTTATMMYGHIEEYKHWVNHLFIIKEIQEETNGFTEFVPLSFM 249
Query: 269 PNNTPLKEEIPSIKKASSNRYLRYLACSR-IFLDNIQNIQSSWVTQGSMIGQLALLFGAN 327
P+ +E + A+ L+ A SR IF I+NIQ+SWV G + Q+AL GAN
Sbjct: 250 HKYAPIYKEGKAKAGATGIEDLKVFAVSRIIFKGLIKNIQASWVKLGKKMVQVALRCGAN 309
Query: 328 DLGSVMMEENVVKAAGT--SFCMNEAGMIELIEDIGSVAAKRNTAYEILK 375
D+G ++EE++ ++AG M+ + ++I+ +G + +R T Y+IL+
Sbjct: 310 DVGGTLIEESISRSAGAEHGVYMSVEEIRDMIKRVGLIPKERTTLYKILE 359
>ref|NP_147081.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||H72782 hypothetical protein APE0249 - Aeropyrum pernix (strain K1)
dbj|BAA79162.1| (AP000058) 340aa long hypothetical protein [Aeropyrum pernix]
Length = 340
Score = 217 bits (553), Expect = 2e-55
Identities = 134/332 (40%), Positives = 189/332 (56%), Gaps = 7/332 (2%)
Query: 44 NAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLS 103
+AP LG A RV L + +IV+ +NYTNIC V C FC+F R K +AY L
Sbjct: 5 SAPAPLLGAVARRVTDLLTGRRVG-YIVNMIMNYTNICVVGCTFCSFYRKPKHPEAYKLE 63
Query: 104 YEEID-QKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHI-AQKFPTITIHGFSAVEI 161
E Q +E Q+LFQGGV P + I+YYE I ++ + IHG S VEI
Sbjct: 64 AREAAAQVVEAWRKYRIRQVLFQGGVDPAIPIEYYEEAFRAIKSETGGEVAIHGLSVVEI 123
Query: 162 DYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAH 221
+++SK+S++S+ EV+ERL++AG+ S+PGAGAE+LSDRVR +I+P K S+D WI
Sbjct: 124 EWLSKVSRMSVGEVVERLRDAGMDSVPGAGAEILSDRVRRIISPLKSSADTWIRTMETIM 183
Query: 222 LCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNNTPLKEEIPSI 281
G+ +ATM++G V+ E+ EHL ++ +LQ G AFI W+F+P N L +IP
Sbjct: 184 EKGLPISATMVYGHVETLEERAEHLLKLLELQRRKGRIMAFIAWNFEPENNELGRKIP-- 241
Query: 282 KKASSNRYLRYLACSRI-FLDNIQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVVK 340
A L+ +A +RI F I+ IQ+ W+T G +GQ L +GAND G + E V+
Sbjct: 242 YPAGGTELLKTVAIARIVFRGEIRWIQAGWLTAGVKLGQATLEYGANDWGGTLYGEKVLP 301
Query: 341 AAGTSFCMNEAGMIE-LIEDIGSVAAKRNTAY 371
AG IE LI + G +R+ Y
Sbjct: 302 EAGVPLPKLVRRSIERLIWEAGYEPVERDNWY 333
>ref|NP_616423.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04903.1| (AE010818) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 406
Score = 216 bits (551), Expect = 3e-55
Identities = 123/354 (34%), Positives = 208/354 (58%), Gaps = 12/354 (3%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
+ +E+ L L++ P EL + A +++ + + +++V+RNI TN C C FCA++
Sbjct: 42 KCTKEDALLLLEGNPF-ELFELANKLRASTVGD-VVSYVVNRNIYITNKCVGTCGFCAYR 99
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
+ Y+LS EEI ++ EE G ++ QGG P+ +++Y ++ I FP I
Sbjct: 100 TD----EGYILSIEEILKQTEEAREAGAVEVCVQGGYTPEADMEFYLEIIEAIKSGFPDI 155
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
IH S +E++Y + +S +S+++ L +LK GL S+ G AE+LSDRVR +I P K+++
Sbjct: 156 CIHALSPMEVNYAAGLSGMSVEDALRKLKKCGLDSLTGTSAEILSDRVRKIICPGKITTQ 215
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
+W++ AH GI + +T+M+G V+ E+ ++H+ +R++Q ETGG I SF P N
Sbjct: 216 QWVDTVTAAHRAGISTNSTIMYGHVETLEERLDHVFTIREIQKETGGISELIPMSFLPYN 275
Query: 272 TPLKEEIPSIKKASSN--RYLRYLACSRIFL-DNIQNIQSSWVTQGSMIGQLALLFGAND 328
P+ E++ + K +S L+ +A SRI L ++ NIQ++WV G + Q AL GAND
Sbjct: 276 NPIGEKMMASGKFTSTGLEDLQLIAISRIILHTHVNNIQATWVKLGKKLAQFALQCGAND 335
Query: 329 LGSVMMEENVVKAAGTSF--CMNEAGMIELIEDIGSVAAKRNTAY-EILKRYPA 379
LG +ME+ + A+G S+ ++ A +I+ G V +R+T Y ++ R PA
Sbjct: 336 LGGTLMEDQISTASGGSYGEYVSPAEFEWMIKGAGRVPIQRDTLYRKVEPRLPA 389
>ref|NP_215689.1| (NC_000962) hypothetical protein Rv1173 [Mycobacterium tuberculosis
H37Rv]
ref|NP_335653.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
pir||E70875 hypothetical protein Rv1173 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA15850.1| (AL010186) hypothetical protein Rv1173 [Mycobacterium tuberculosis
H37Rv]
gb|AAK45467.1| (AE006998) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
gb|AAL91922.1|AF479769_1 (AF479769) F420 biosynthesis protein FbiC [Mycobacterium bovis BCG]
Length = 856
Score = 216 bits (550), Expect = 4e-55
Identities = 125/311 (40%), Positives = 181/311 (58%), Gaps = 5/311 (1%)
Query: 68 TFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGG 127
TF+V+RNIN+TNIC+ C+FCAF + + DAY LS E+ + E G T++ QGG
Sbjct: 545 TFVVNRNINFTNICYTGCRFCAFAQRKGDADAYSLSVGEVADRAWEAHVAGATEVCMQGG 604
Query: 128 VHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSI 187
+ P+L + Y +LV + + P++ +H FS +EI S LS++E L L+ AGL +I
Sbjct: 605 IDPELPVTGYADLVRAVKARVPSMHVHAFSPMEIANGVTKSGLSIREWLIGLREAGLDTI 664
Query: 188 PGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQ 247
PG AE+L D VR V+ KL + WIE+ AH G++S++TMM+G VD+ V HL
Sbjct: 665 PGTAAEILDDEVRWVLTKGKLPTSLWIEIVTTAHEVGLRSSSTMMYGHVDSPRHWVAHLN 724
Query: 248 RVRDLQDETGGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYL-ACSRIFL-DNIQN 305
+RD+QD TGGF F+ F N+PL + + S+R R + A +RI L I +
Sbjct: 725 VLRDIQDRTGGFTEFVPLPFVHQNSPL-YLAGAARPGPSHRDNRAVHALARIMLHGRISH 783
Query: 306 IQSSWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAGTSF--CMNEAGMIELIEDIGSV 363
IQ+SWV G Q+ L GANDLG +MEE + + AG+ A ++ + E IG
Sbjct: 784 IQTSWVKLGVRRTQVMLEGGANDLGGTLMEETISRMAGSEHGSAKTVAELVAIAEGIGRP 843
Query: 364 AAKRNTAYEIL 374
A +R T Y +L
Sbjct: 844 ARQRTTTYALL 854
>ref|NP_440146.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P72811|YG59_SYNY3 Hypothetical protein sll1659
pir||S74675 hypothetical protein sll1659 - Synechocystis sp. (strain PCC 6803)
dbj|BAA16826.1| (D90901) ORF_ID:sll1659~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 392
Score = 208 bits (530), Expect = 7e-53
Identities = 131/339 (38%), Positives = 191/339 (55%), Gaps = 26/339 (7%)
Query: 56 RVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELL 115
R++++L E +T ++V+RNIN+TNIC C FCAF+R + AY L+ EI K + +
Sbjct: 50 RLRRKLVGETVT-YVVNRNINFTNICEQHCNFCAFRRDDGQTGAYWLTDSEIFNKTKGAV 108
Query: 116 AIGGTQILFQGGVHPQLKID-----YYENLVSHIAQKFPTITIHGFSAVEIDYISKISKL 170
A G T+I QGG++PQ KI+ YY NLV I +FP + +HGFS EI +I++ L
Sbjct: 109 AQGATEICLQGGLNPQAKINGSSLAYYVNLVETIKGQFPQLHLHGFSPQEIQFIARQDGL 168
Query: 171 SLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTAT 230
+ EVL LK +GL S+PG AEVL DRVR +I P+K+ S W+E+ +AH G+ +T+T
Sbjct: 169 TYGEVLMALKFSGLDSLPGTAAEVLVDRVRRIICPEKIDSQTWLEIIGLAHRHGLPTTST 228
Query: 231 MMFGSVDNEEDVVEHLQRVRDLQDET--GGFRA----FILWSFQPNNTPLKEEIPSIKK- 283
+M G V+ E+++ HL R+R Q + G+ A FIL F P PS++K
Sbjct: 229 LMAGHVETPEEIITHLDRLRQRQQTSLAQGYAASITEFILLPFVGEKAP-----PSLRKR 283
Query: 284 -----ASSNRYLRYLACSRIFLDN-IQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEEN 337
++ L+ +A +R++L I N Q SWV G AL +G NDLG +MEE+
Sbjct: 284 VGRDQPDLDQALQIMAIARLYLGKWIVNHQPSWVKLGLTGATTALEWGCNDLGGTLMEEH 343
Query: 338 VVKAAGT--SFCMNEAGMIELIEDIGSVAAKRNTAYEIL 374
+ AG C+ + I G +R T YE L
Sbjct: 344 ITTMAGAKGGTCLTATQLQNAIISTGRPYQQRTTLYEHL 382
>ref|NP_559112.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL63294.1| (AE009807) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 359
Score = 205 bits (521), Expect = 8e-52
Identities = 116/343 (33%), Positives = 189/343 (54%), Gaps = 2/343 (0%)
Query: 33 INREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKR 92
++R + + LMK A + L + A + ++ + + TF+ + INY+NIC C CAF R
Sbjct: 15 LDRSDAVFLMKEADVFTLAKVADELTRKYFGD-VVTFVNNVVINYSNICVAKCPICAFYR 73
Query: 93 TLKEKDAYVLSYEEIDQKIEEL-LAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
K+ Y+ S EE+ +E G T++ GG +P + +Y++ L + ++ P I
Sbjct: 74 LPGHKEGYLRSPEEVAAMVEFFHRQYGVTELHINGGFNPFIAPEYFDELFRAVKKRAPHI 133
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
TI G + E+DY +++ K S +EVL R K AGL +I G GAE+ ++ VR +I+P K+S +
Sbjct: 134 TIKGPTMAEVDYYARLWKTSWREVLSRWKEAGLDAISGGGAEIFAEEVRRIISPHKISGE 193
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
W+++ +AH GI S ATM++G V+ E VV+HL R+++LQ+ TGG FI F P N
Sbjct: 194 EWVKIAEVAHEMGIPSNATMLYGHVERVEHVVDHLFRIKELQERTGGLMLFIPVKFNPLN 253
Query: 272 TPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
T L + A S ++ +A +R+ L + + + W++ G + LL GANDL
Sbjct: 254 TELAARGVVARPAPSTYDVKVVAIARLILKDRLKVGAYWLSVGKKLASTLLLSGANDLVG 313
Query: 332 VMMEENVVKAAGTSFCMNEAGMIELIEDIGSVAAKRNTAYEIL 374
M E V+ +AG + + + G A R+T + IL
Sbjct: 314 TMYNEAVLTSAGAQHNATAEELAAIAREAGRRPALRDTFHRIL 356
>ref|NP_147082.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||C72783 hypothetical protein APE0252 - Aeropyrum pernix (strain K1)
dbj|BAA79165.1| (AP000058) 392aa long hypothetical protein [Aeropyrum pernix]
Length = 392
Score = 204 bits (520), Expect = 1e-51
Identities = 125/358 (34%), Positives = 192/358 (52%), Gaps = 12/358 (3%)
Query: 33 INREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKR 92
+ R +I L+ PL + A R+ + + ++IV+ + YTN+C C FC F
Sbjct: 30 LTRSDIERLLSETPLHPMAAAA-DYYARVIKKGVGSYIVNIYLAYTNVCVTRCTFCDFYV 88
Query: 93 TLKEKDAYVLSYEEIDQKIEELLA--IGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPT 150
+ + + E ++ L +G ++ GG P+L ++YYE + I + P
Sbjct: 89 PPERRSSGYTHPPEHLGRVAGLARKRLGVREVHMVGGNDPELPLEYYEEAIREIKRVAPG 148
Query: 151 ITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSS 210
+ + F+A EI +I+K + + KEVL R + AGL ++PG GAEVLS+ VR IAP K+SS
Sbjct: 149 VVLKAFTAEEIGFIAKATGNTPKEVLARFREAGLDALPGGGAEVLSEEVRKRIAPLKISS 208
Query: 211 DRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPN 270
D ++E+HR+AH GI+S T+++ ++ V EHL R+R LQ+ETGGF +FI F P
Sbjct: 209 DEYLEIHRLAHSMGIRSNITLLYAHIEEPRHVAEHLYRIRRLQEETGGFISFIPIRFNPG 268
Query: 271 NTPLKEEIPSIKKASSNRY--LRYLACSRI-FLDNIQNIQSSWVTQGSMIGQLALLFGAN 327
TPL +KK LR +A SR+ L I NI + WV+ G + Q AL GAN
Sbjct: 269 KTPLSRHPEYVKKGDRGGLYDLRIVAASRLALLGAIDNIMAYWVSMGEKLAQAALSHGAN 328
Query: 328 DLGSVMMEENVVKAAGT---SFCMNEAGMIELIEDIGSVAAKRNTAYEILKRYPAKAK 382
D+G E+V+ AA + M+ A ++ I G +R+T Y YP +A+
Sbjct: 329 DIGGTFYNESVISAASSLRKRKGMSPARLVFNIATAGWTPMERDTFYNY---YPPRAE 383
>ref|NP_282514.1| (NC_002163) hypothetical protein Cj1368 [Campylobacter jejuni]
pir||E81281 hypothetical protein Cj1368 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73795.1| (AL139078) hypothetical protein Cj1368 [Campylobacter jejuni]
Length = 354
Score = 202 bits (513), Expect = 7e-51
Identities = 113/348 (32%), Positives = 197/348 (56%), Gaps = 8/348 (2%)
Query: 32 RINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
R+N+EE + + + L LG+ A + + +LH + + F ++R+IN TNIC CKFCAF
Sbjct: 13 RLNQEEA-NALWDLDLFTLGKYAHKKRTKLHGKKVY-FNINRHINPTNICADTCKFCAFS 70
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTI 151
K + Y++++EEI + ++E + ++ + +Y + I +K+P +
Sbjct: 71 AHRKNPNPYLMTHEEIMKIVDETVKRETKEVHIVSAHNKDTTWQWYLEIFKMIKEKYPNL 130
Query: 152 TIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSD 211
+ +A EID++ + K+S +EV+E++ G+ S+PG GAE+ + VR I K+SS+
Sbjct: 131 HVKAMTAAEIDFLHRRFKMSYEEVIEKMLEYGVDSMPGGGAEIFDEEVRKKICHGKVSSE 190
Query: 212 RWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNN 271
W+++H++ H +S ATM+FG ++ ++H+ R+RDLQD+TGGF AFI +Q +
Sbjct: 191 NWLKIHKLWHEKSKQSNATMLFGHIEERHHRIDHMLRLRDLQDQTGGFNAFIPLVWQRD- 249
Query: 272 TPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGS 331
K I + K S L+ +A SR+ LDNI+NI++ W T + +A FGANDL
Sbjct: 250 ---KSFIQTDKIMDSEEILKTIAISRLVLDNIKNIKAYWATMTLNLAMVAQEFGANDLDG 306
Query: 332 VMMEENVVKAAGTSFCMNEA--GMIELIEDIGSVAAKRNTAYEILKRY 377
+ +E++ A G + I++I+ + +R++ Y LK Y
Sbjct: 307 TIEKESIQSAGGAKSAKGTSLKTFIDMIKTSNLIPVERDSLYNELKTY 354
>ref|NP_488169.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB75828.1| (AP003595) ORF_ID:alr4129~hypothetical protein [Nostoc sp. PCC
7120]
Length = 391
Score = 201 bits (510), Expect = 2e-50
Identities = 115/320 (35%), Positives = 178/320 (54%), Gaps = 17/320 (5%)
Query: 68 TFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGG 127
T++++RNIN+TNIC C FCAF+R + DAY L + I +K + + G T+I QGG
Sbjct: 56 TYVINRNINFTNICEQHCSFCAFRRDDGDADAYWLDWAGIREKSHDAVQRGATEICMQGG 115
Query: 128 VHPQLKID-----YYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNA 182
+HPQ +ID YY LV I Q++P I +H FS E+ +I+++ L +V+ L+NA
Sbjct: 116 LHPQAQIDGKSLPYYLKLVETIKQEYPQIHLHAFSPQEVQFIARVDGLEYVDVISALQNA 175
Query: 183 GLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDV 242
G++S+PG AEVL D VR ++ P+K+++ W+E+ AH G+ +T+T++ G ++ E
Sbjct: 176 GVNSLPGTAAEVLDDEVRRILCPEKINTATWLEIIGTAHKVGLHTTSTILSGHIETPEQK 235
Query: 243 VEHLQRVRDLQDET------GGFRAFILWSFQPNNTP--LKEEIPSIKKASSNRYLRYLA 294
+ HL+++R LQ FI+ F P L+ + + ++ L A
Sbjct: 236 IGHLEKLRSLQQTAINHKYPARITEFIVLPFVGQEAPKSLRRRVGRDQPILADALL-LGA 294
Query: 295 CSRIFLDN-IQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAGT--SFCMNEA 351
+RI+L N I N Q SWV G AL +G ND+G +MEE++ AG CM A
Sbjct: 295 VARIYLGNWIPNHQPSWVKLGLAGATEALTWGCNDIGGTLMEEHITTMAGAVGGTCMEVA 354
Query: 352 GMIELIEDIGSVAAKRNTAY 371
+ I IG +R+T Y
Sbjct: 355 TLQNAIASIGRPYQQRDTLY 374
>ref|NP_628596.1| (NC_003888) conserved hypothetical protein SCD6.07 [Streptomyces
coelicolor A3(2)]
emb|CAB88436.1| (AL353815) conserved hypothetical protein SCD6.07 [Streptomyces
coelicolor A3(2)]
Length = 867
Score = 197 bits (502), Expect = 1e-49
Identities = 111/312 (35%), Positives = 175/312 (55%), Gaps = 13/312 (4%)
Query: 68 TFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGG 127
T+IV RNIN+TN+C+ C+FCAF + + DAY LS +++ + ++ +G ++ QGG
Sbjct: 535 TYIVTRNINFTNVCYTGCRFCAFAQRRTDADAYTLSLDQVADRAQQAWEVGAVEVCMQGG 594
Query: 128 VHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSI 187
+HP L Y ++ + ++ P + +H FS +E+ + + LS++E L K AGL S+
Sbjct: 595 IHPDLPGTAYFDIARAVKERVPGMHVHAFSPMEVVNGATRTGLSIREWLTAAKEAGLDSV 654
Query: 188 PGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQ 247
PG AE+L D VR ++ KL + WIEV AH GI+S++TMM+G VD + HL+
Sbjct: 655 PGTAAEILDDEVRWILTKGKLPAATWIEVIETAHELGIRSSSTMMYGHVDQPRHWLGHLR 714
Query: 248 RVRDLQDETGGFRAFILWSFQPNNTP-----LKEEIPSIKKASSNRYLRYLACSRIFL-D 301
+ +Q TGGF F+ F N P + P+++ NR + A +R+ L
Sbjct: 715 TLAGIQRRTGGFTEFVTLPFIHTNAPVYLAGIARPGPTLR---DNRAV--TAMARLLLHP 769
Query: 302 NIQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAGTSFCMNEA--GMIELIED 359
+I NIQ+SWV G+ L GANDLG +MEE + + AG+S+ ++ +I + +
Sbjct: 770 HIPNIQTSWVKLGTEGAAEMLRSGANDLGGTLMEETISRMAGSSYGSYKSVKDLIAVADA 829
Query: 360 IGSVAAKRNTAY 371
G A R T Y
Sbjct: 830 AGRPAKPRTTLY 841
>ref|NP_224709.1| (NC_000922) Fe-S oxidoreductase [Chlamydophila pneumoniae CWL029]
ref|NP_300568.1| (NC_002491) Fe-S oxidoreductase [Chlamydophila pneumoniae J138]
ref|NP_444791.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||G72069 conserved hypothetical protein CP0240 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD18653.1| (AE001636) Fe-S oxidoreductase [Chlamydophila pneumoniae CWL029]
gb|AAF38105.1| (AE002184) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98719.1| (AP002546) Fe-S oxidoreductase [Chlamydophila pneumoniae J138]
Length = 369
Score = 188 bits (477), Expect = 1e-46
Identities = 108/296 (36%), Positives = 163/296 (54%), Gaps = 3/296 (1%)
Query: 78 TNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYY 137
TN C CKFC+F + ++ S +++ Q+I+ + T++ GG P + YY
Sbjct: 74 TNFCDFSCKFCSFYAKPGDPKGWLYSPDDLLQQIQNIKT-PITEVHIVGGCFPSCNLQYY 132
Query: 138 ENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSD 197
+L + I + P I I +A+E Y+S + LS+++VL LK+AGL SIPG GAE+L D
Sbjct: 133 SDLFTKIKEYDPQIHIKALTAIEYAYLSDLDNLSIRDVLLTLKDAGLDSIPGGGAEILVD 192
Query: 198 RVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETG 257
++R+ +APK+LSS ++ +H+MAH GI S TM+ + ED+V H+ +VRDLQDET
Sbjct: 193 KIRNFLAPKRLSSSDFLNIHKMAHQLGIHSNITMLCYHKEGPEDLVTHMVKVRDLQDETQ 252
Query: 258 GFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMI 317
GF+ FIL F N L + + + + +A +RIFLDN N+++ W G
Sbjct: 253 GFKNFILLKFAQENNVLGKRLRKSGQGHAIPLKSLMAVARIFLDNFSNMKALWNYLGIEA 312
Query: 318 GQLALLFGANDLGSVMMEENVVKAAGTS--FCMNEAGMIELIEDIGSVAAKRNTAY 371
L GANDL S M E V + A + M+ GM LI G N+++
Sbjct: 313 ALDLLSCGANDLSSTHMGEKVFQMASSKEPIKMDAEGMAALITQQGRTPCLTNSSH 368
>ref|NP_207448.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64601 conserved hypothetical protein HP0654 - Helicobacter pylori
(strain 26695)
gb|AAD07719.1| (AE000579) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 360
Score = 187 bits (476), Expect = 1e-46
Identities = 110/340 (32%), Positives = 185/340 (54%), Gaps = 14/340 (4%)
Query: 47 LKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEE 106
L LG+ A R++Q +H + + F V+R++N +NIC CKFCAF K + Y +S EE
Sbjct: 26 LYTLGEVADRMRQNMH-QKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEE 84
Query: 107 IDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISK 166
I +K++ G ++ +P ++Y + I Q+ P + + +A E+ ++S
Sbjct: 85 ILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSV 144
Query: 167 ISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIK 226
+ VLE + AG+ S+PG GAE+ + +R I K+ S RW+E+H H G
Sbjct: 145 KFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKM 204
Query: 227 STATMMFGSVDNEEDVVEHLQRVRDLQ-------DETGGFRAFILWSFQPNNTPLKEEIP 279
S ATM+FG ++N+ ++H+ R++ +Q ++ GGF AFI +Q N L E
Sbjct: 205 SNATMLFGHIENKIHRIDHMLRIKKIQSPKNQVENKEGGFNAFIPLLYQKENNYLNVE-- 262
Query: 280 SIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVV 339
K S+ L+ +A SRI L+NI +I++ W T G + +A FGANDL + E++
Sbjct: 263 --KSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQ 320
Query: 340 KAAG--TSFCMNEAGMIELIEDIGSVAAKRNTAYEILKRY 377
AAG + + + +I I+D G VA +R++ Y ++++
Sbjct: 321 SAAGAKSRHGLEKEDLIFKIKDAGFVAVERDSLYNFIQKF 360
>ref|NP_223317.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71910 hypothetical protein jhp0599 - Helicobacter pylori (strain J99)
gb|AAD06180.1| (AE001492) putative [Helicobacter pylori J99]
Length = 360
Score = 187 bits (476), Expect = 1e-46
Identities = 110/340 (32%), Positives = 185/340 (54%), Gaps = 14/340 (4%)
Query: 47 LKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEE 106
L LG+ A R++Q +H + + F V+R++N +NIC CKFCAF K + Y +S EE
Sbjct: 26 LYTLGEAADRMRQNMH-QKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEE 84
Query: 107 IDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISK 166
I +K++ G ++ +P ++Y + I Q+ P + + +A E+ ++S
Sbjct: 85 ILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSA 144
Query: 167 ISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIK 226
+ VLE + AG+ S+PG GAE+ + +R I K+ S RW+E+H H G
Sbjct: 145 KFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKM 204
Query: 227 STATMMFGSVDNEEDVVEHLQRVRDLQ-------DETGGFRAFILWSFQPNNTPLKEEIP 279
S ATM+FG ++N+ ++H+ R++ +Q ++ GGF AFI +Q N LK
Sbjct: 205 SNATMLFGHIENKIHRIDHMLRIKKIQSPKNKVENKEGGFNAFIPLLYQKENNYLKVG-- 262
Query: 280 SIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVV 339
K S+ L+ +A SRI L+NI +I++ W T G + +A FGANDL + E++
Sbjct: 263 --KSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQ 320
Query: 340 KAAG--TSFCMNEAGMIELIEDIGSVAAKRNTAYEILKRY 377
AAG + + + +I I+D G VA +R++ Y ++++
Sbjct: 321 SAAGAKSRHGLEKEDLIFKIKDSGFVAVERDSLYNFIQKF 360
>gb|AAF04273.1|AF181880_2 (AF181880) unknown [Helicobacter pylori]
Length = 360
Score = 187 bits (475), Expect = 2e-46
Identities = 109/340 (32%), Positives = 185/340 (54%), Gaps = 14/340 (4%)
Query: 47 LKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEE 106
L LG+ A ++Q +H + + F V+R++N +NIC CKFCAF K + Y +S EE
Sbjct: 26 LYTLGEAADHMRQNMH-QKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEE 84
Query: 107 IDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISK 166
I +K++ G ++ +P ++Y + I Q+ P + + +A E+ ++S
Sbjct: 85 ILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLST 144
Query: 167 ISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIK 226
+ VLE + AG+ S+PG GAE+ + VR I K+ S RW+E+H H G
Sbjct: 145 KFNKPFELVLEDMLKAGVDSMPGGGAEIFDEEVRRKICKGKVGSSRWLEIHAYWHKLGKM 204
Query: 227 STATMMFGSVDNEEDVVEHLQRVRDLQ-------DETGGFRAFILWSFQPNNTPLKEEIP 279
S ATM+FG ++++ ++H+ R++ +Q ++ GGF AFI +Q N LK E
Sbjct: 205 SNATMLFGHIEDKIHRIDHMLRIKKIQSPKNKVENKEGGFNAFIPLLYQKENNYLKVE-- 262
Query: 280 SIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVV 339
K S+ L+ +A SRI L+NI +I++ W T G + +A FGANDL + E++
Sbjct: 263 --KSPSAIEILKTIAISRILLNNIPHIKAYWATLGLNLALVAQEFGANDLDGTIEIESIQ 320
Query: 340 KAAG--TSFCMNEAGMIELIEDIGSVAAKRNTAYEILKRY 377
AAG + + + ++ I+D G VA +R++ Y ++++
Sbjct: 321 SAAGAKSRHGLEKEDLVFKIKDAGFVAVERDSLYNFIQKF 360
>ref|NP_219938.1| (NC_000117) Fe-S oxidoreductase [Chlamydia trachomatis]
pir||B71516 probable Fe-S oxidoreductase - Chlamydia trachomatis (serotype D,
strain UW3/Cx)
gb|AAC68023.1| (AE001316) Fe-S oxidoreductase [Chlamydia trachomatis]
Length = 369
Score = 183 bits (464), Expect = 3e-45
Identities = 109/295 (36%), Positives = 160/295 (53%), Gaps = 5/295 (1%)
Query: 78 TNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLA-IGGTQILFQGGVHPQLKIDY 136
TN C +C FC+F + + +++ Q I+E + I T I+ G +P + Y
Sbjct: 74 TNFCQFNCTFCSFYAKPGNPTGWFFTPDQLVQSIKENPSPITETHIV--AGCYPSCNLAY 131
Query: 137 YENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLS 196
YE L S I Q FP + I SA+E DY+SK+ L +KEV++RL+ AGL SIPG GAE+L
Sbjct: 132 YEELFSKIKQNFPDLHIKALSAIEYDYLSKLDNLPVKEVMQRLRIAGLDSIPGGGAEILV 191
Query: 197 DRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDET 256
D VR+ ++ +LSS ++E+H AH GI S ATM+ + D++ H+ ++R LQD+T
Sbjct: 192 DEVRETLSRGRLSSQGFLEIHETAHSLGIPSNATMLCYHRETPADIMTHMSKLRALQDKT 251
Query: 257 GGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSM 316
GF+ FIL F N L + + + S +A +R+FLDNI NI++ W G
Sbjct: 252 SGFKNFILLKFASENNALGKRLHKMTSRHSIPPATIIAVARLFLDNIPNIKALWNYLGLD 311
Query: 317 IGQLALLFGANDLGSVMMEENVVKAAGTS--FCMNEAGMIELIEDIGSVAAKRNT 369
+ L GANDL S E V + A + M+ GM LI G + N+
Sbjct: 312 VALHLLSCGANDLSSTHQGEKVFRMASSQEPIRMDIEGMSHLIIQHGRIPCLVNS 366
>ref|NP_297084.1| (NC_002620) conserved hypothetical protein [Chlamydia muridarum]
pir||F81674 conserved hypothetical protein TC0710 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39523.1| (AE002339) conserved hypothetical protein [Chlamydia muridarum]
Length = 369
Score = 182 bits (462), Expect = 6e-45
Identities = 106/289 (36%), Positives = 160/289 (54%), Gaps = 5/289 (1%)
Query: 78 TNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLA-IGGTQILFQGGVHPQLKIDY 136
TN C +C FC+F + + +++ + I+E + I T I+ G +P + Y
Sbjct: 74 TNFCQFNCTFCSFYAKPGNPSGWFFTPDQLIRSIKETTSPITETHIV--AGCYPSCNLAY 131
Query: 137 YENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLS 196
YE L + I Q FP + I SA+E Y++K+ LS++EV+ERL+ AGL SIPG GAE+L
Sbjct: 132 YEELFTKIKQNFPDLHIKALSAIEYAYLAKLENLSVREVMERLRIAGLDSIPGGGAEILV 191
Query: 197 DRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDET 256
D VR+ ++ +LSS ++++HR AH GI S ATM+ + ED+V HL ++R LQDET
Sbjct: 192 DEVRETLSRGRLSSQGFLDIHRTAHSLGIPSNATMLCYHRETPEDMVTHLSKLRSLQDET 251
Query: 257 GGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSM 316
GF+ FIL F N L + + + S +A +R+FLDN NI++ W G
Sbjct: 252 LGFKNFILLKFASENNALGKRLHKMTARHSIPPATIIAVARLFLDNFSNIKALWNYLGLD 311
Query: 317 IGQLALLFGANDLGSVMMEENVVKAAGTS--FCMNEAGMIELIEDIGSV 363
+ L GAND S + E V + + + M+ GM +LI G +
Sbjct: 312 VALHLLSCGANDFSSTHLGEKVFQMSSSKEPIRMDIEGMAKLITQQGRI 360
>ref|NP_393695.1| (NC_002578) conserved hypothetical protein [Thermoplasma
acidophilum]
emb|CAC11363.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 365
Score = 178 bits (452), Expect = 8e-44
Identities = 104/312 (33%), Positives = 162/312 (51%), Gaps = 5/312 (1%)
Query: 68 TFIVDRNINYTNICFVDCKFCAFKRTLKEK---DAYVLSYEEIDQKIEELLAIGGTQILF 124
T+ V NINYTN C C CAF K K Y L+ E I + E T++
Sbjct: 51 TYAVSYNINYTNYCTASCPICAFYVPYKNKRFGKGYELTKEMIMHEAYEAKKRQVTEVHI 110
Query: 125 QGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGL 184
GG +P L I+YYE++ I P + I F+ EID+I++ + S+KE + R AG+
Sbjct: 111 VGGFNPDLSIEYYEDMFRTIRSIMPDVAIKAFTIPEIDFIARTTGNSIKETVSRFMEAGM 170
Query: 185 SSIPGAGAEVLSDRVRDVIA-PKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVV 243
++ G GAE+ VR ++A P+K+S ++W+E ++ H G+K +TM +G V+ +V
Sbjct: 171 NAHTGGGAEIFDPEVRRIVATPEKISGEKWLEDAKIIHKLGLKGNSTMTYGHVEGWNHIV 230
Query: 244 EHLQRVRDLQDETGGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFL-DN 302
+H+ R+RD Q E GF +FI F P NT L + A ++ L+ +A +RI + +
Sbjct: 231 DHMIRIRDNQMEVPGFLSFIPLKFSPENTALLKSGRVKGPAPVDKDLKVIALARILMGEA 290
Query: 303 IQNIQSSWVTQGSMIGQLALLFGANDLGSVMMEENVVKAAGTSFCMNEAGMIELIEDIGS 362
I+NI WV G ++ Q+A+ G +DL E V A + L+ G
Sbjct: 291 IRNISVYWVALGKLVAQIAINGGGSDLVGTAYSEKVFGATDRRNPTTTEELNHLVRQAGK 350
Query: 363 VAAKRNTAYEIL 374
+ A R+T Y I+
Sbjct: 351 IPAIRDTFYNIM 362
>ref|NP_111896.1| (NC_002689) Uncharacterized conserved protein [Thermoplasma
volcanium]
dbj|BAB60545.1| (AP000996) hypothetical protein [Thermoplasma volcanium]
Length = 365
Score = 177 bits (450), Expect = 1e-43
Identities = 109/360 (30%), Positives = 183/360 (50%), Gaps = 7/360 (1%)
Query: 21 LNFLWEQGFKMRINREEILDLMKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNI 80
+++ +E+ + + + +DL+ N L +L + A R+ E ++ + + NINYTN
Sbjct: 6 VDYWYERAIESPLEYSDSIDLL-NMDLYDLMKLADRLTHYDAGETVS-YAISYNINYTNY 63
Query: 81 CFVDCKFCAFKRTLKEK---DAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYY 137
C C CAF K K Y L+ E++ ++ G T+I GG P L I+YY
Sbjct: 64 CTASCPICAFYVPYKNKRFGKGYELTKEQVRKEALIAKQKGATEIHIVGGFDPDLSIEYY 123
Query: 138 ENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSD 197
E++ I P + I F+ EID+I++ + S+KE + R +AG+++ G GAE+
Sbjct: 124 EDIFRTIRGIMPNVAIKAFTIPEIDFIARTTGNSIKETVLRFMDAGMNAHTGGGAEIFDQ 183
Query: 198 RVRDVI-APKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDET 256
+R I P+K+S ++W+E ++ H G+K +TM +G ++ E +++H+ R+RD Q E
Sbjct: 184 EIRKYITTPEKVSGEKWLEDAKIIHSLGLKGNSTMTYGHIEGWEHIIDHMIRLRDNQIEV 243
Query: 257 GGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDN-IQNIQSSWVTQGS 315
GF +FI F P NT L A ++ L+ +A +RI + I+NI WV G
Sbjct: 244 PGFLSFIPLKFSPENTALLRSGRVHGPAPVDKDLKVIALARIIMGRAIRNISVYWVAIGK 303
Query: 316 MIGQLALLFGANDLGSVMMEENVVKAAGTSFCMNEAGMIELIEDIGSVAAKRNTAYEILK 375
+ Q+A+ G NDL E V A + +I G + R+T Y I++
Sbjct: 304 LTAQIAINGGGNDLVGTAYSEKVFGATDRKTSTTTEELNNMIRQAGKIPGVRDTFYNIVE 363
>ref|NP_280642.1| (NC_002607) Vng1938c [Halobacterium sp. NRC-1]
gb|AAG20122.1| (AE005090) Vng1938c [Halobacterium sp. NRC-1]
Length = 500
Score = 143 bits (361), Expect = 3e-33
Identities = 100/339 (29%), Positives = 150/339 (43%), Gaps = 35/339 (10%)
Query: 68 TFIVDRNINYTNICFVDCKFCAFKRTLKEKDA--------YVLSYEEIDQKIEELLAIGG 119
TF+ + N N T C C FC FK T + + + E + + + G
Sbjct: 122 TFVANLNNNVTTACNTGCLFCNFKDTAHRFETEHEAAHGGFTKTPAESKATVADAIQRGV 181
Query: 120 TQILFQGGVHPQLKI--------------------DYYENLVSHIAQKFPTIT-----IH 154
+++ G+HP + + Y+ + A + ++ +H
Sbjct: 182 SEVTSVSGLHPAFGLNEAHRDALDPDDPDHNYKPPEAYDTDPTTYAAQIAAMSEAGAHVH 241
Query: 155 GFSAVEIDYISKISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWI 214
+ E + + EV E L +AGL ++PG AE+L D VRDVI P K+++D W+
Sbjct: 242 SITPEEAHHAQRGVSWGYDEVYETLADAGLDTVPGTAAEILVDEVRDVICPGKMTTDEWV 301
Query: 215 EVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFILWSFQPNNTPL 274
A G+ +TAT+M+G V+N + HL +R LQD T F+ SF TPL
Sbjct: 302 AAMEAAADAGLGTTATIMYGHVENAAHRIHHLDVIRALQDRTHNITEFVPLSFIHEQTPL 361
Query: 275 KEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLFGANDLGSVMM 334
E AS +A SR+FLDNI +IQSSWV G G L GA+D ++
Sbjct: 362 YERGVVDGGASDAEDELMIAVSRLFLDNIDHIQSSWVKFGDAKGLALLNCGADDFMGTIL 421
Query: 335 EENVVKAAGTSF--CMNEAGMIELIEDIGSVAAKRNTAY 371
E + K AG + A E+I IG +R+T Y
Sbjct: 422 SEEITKRAGGQHGEFRSVADYAEMISAIGRTPVERSTDY 460
>emb|CAA76032.1| (Y16068) orf (HP0654) [Helicobacter pylori]
Length = 232
Score = 130 bits (327), Expect = 3e-29
Identities = 66/207 (31%), Positives = 114/207 (54%), Gaps = 1/207 (0%)
Query: 47 LKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEE 106
L LG+ A ++Q +H + + F V+R++N +NIC CKFCAF K + Y +S EE
Sbjct: 26 LYTLGEAADHMRQNMH-QKIVYFNVNRHLNPSNICADACKFCAFSAHRKNPNPYEMSLEE 84
Query: 107 IDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISK 166
I +K++ G ++ +P ++Y + I Q+ P + + +A E+ ++S
Sbjct: 85 ILEKVKNSYNKGIKEVHIVSAHNPNYSYEWYLKVFETIKQEMPNLHLKAMTAAEVHFLSV 144
Query: 167 ISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIK 226
+ VLE + AG+ S+PG GAE+ + +R I K+ S RW+E+H H G
Sbjct: 145 KFNKPFERVLEDMLKAGVDSMPGGGAEIFDEEIRRKICNGKVGSSRWLEIHAYWHKLGKM 204
Query: 227 STATMMFGSVDNEEDVVEHLQRVRDLQ 253
S ATM+FG ++N+ ++H+ R++ +Q
Sbjct: 205 SNATMLFGHIENKIHRIDHMLRIKKIQ 231
>ref|NP_614181.1| (NC_003551) Predicted enzyme related to thiamine biosynthesis
enzyme ThiH [Methanopyrus kandleri AV19]
gb|AAM02111.1| (AE010379) Predicted enzyme related to thiamine biosynthesis
enzyme ThiH [Methanopyrus kandleri AV19]
Length = 380
Score = 59.3 bits (142), Expect = 7e-08
Identities = 69/308 (22%), Positives = 136/308 (43%), Gaps = 34/308 (11%)
Query: 42 MKNAPLKELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYV 101
+K L EL RA R+ + + ++ + + T +C C +C F+R +E +
Sbjct: 24 LKGNDLLELMDRANRLTREKFG-TVVSYSKNVFVPLTRLCRNRCAYCTFRREPEEVRSPY 82
Query: 102 LSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEI 161
LS EE+ + +E+ G ++LF G P+ + D + + HG+S+ +
Sbjct: 83 LSPEEVFEIVEKGKEAGCKEVLFTFGERPEERYD----------EALEWLEEHGYSST-V 131
Query: 162 DYISKISKLSLKEV-------------LERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKL 208
+Y+ + + ++E E K ++ G E+LS+R+ + P +
Sbjct: 132 EYLVDLCRRCVEEYDMLPHSNPGVITKREMRKLRRWNASMGLMMEILSERLCEESGPHEH 191
Query: 209 S----SDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRDLQDETGGFRAFIL 264
S + ++V + A + T ++ G + E+ V+ L+ ++ + + G + I+
Sbjct: 192 SPGKRPEERLKVLKYAGELKVPFTTGILIGIGETWEERVKTLEEIQRMHERYGHVQEVIV 251
Query: 265 WSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQNIQSSWVTQGSMIGQLALLF 324
+F+ E+ P A LR +A +R+ L ++ + + + GQLALL
Sbjct: 252 QNFRTKPGIPMEDHPEPTPAD---LLRTVATARLILPDVPVQVPPNLNRET--GQLALLA 306
Query: 325 GANDLGSV 332
GAND G V
Sbjct: 307 GANDWGGV 314
>ref|NP_634518.1| (NC_003901) Biotin synthase [Methanosarcina mazei Goe1]
gb|AAM32190.1| (AE013493) Biotin synthase [Methanosarcina mazei Goe1]
Length = 346
Score = 48.1 bits (113), Expect = 2e-04
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 7/208 (3%)
Query: 75 INYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKI 134
I TNIC C +C F+R + A ++ EE+ +E + G T+ LF G + ++
Sbjct: 20 IPVTNICRNQCGYCGFRREPGQPGARLMKPEEVISVLENGVRAGCTEALFTFGERAE-EV 78
Query: 135 DYYENLVSHI--AQKFPTITIHGFSAVEIDYISKISK-LSLKEVLERLKNAGLSSIPGAG 191
Y ++ I + + +A++I + + + + LE LK L++ G
Sbjct: 79 PGYGEMLEEIGYSSTLEYLVFLCETAIDIGILPHTNAGIMTRSELEALK--PLNASMGLM 136
Query: 192 AEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDVVEHLQRVRD 251
E + P K+ +R +E R A I T ++ G ++ +D +E L+ +
Sbjct: 137 LESTAVLAAHKDCPGKI-PERRLETIREAGKLKIPYTTGLLIGIGESRDDRIESLEAIAA 195
Query: 252 LQDETGGFRAFILWSFQPNNTPLKEEIP 279
L E G + I+ +F P E P
Sbjct: 196 LHREYGHIQEVIIQNFAPKPGTEMENFP 223
>ref|NP_616425.1| (NC_003552) biotin synthase [Methanosarcina acetivorans str. C2A]
[Methanosarcina acetivorans C2A]
gb|AAM04905.1| (AE010818) biotin synthase [Methanosarcina acetivorans str. C2A]
[Methanosarcina acetivorans C2A]
Length = 329
Score = 48.1 bits (113), Expect = 2e-04
Identities = 59/273 (21%), Positives = 119/273 (42%), Gaps = 37/273 (13%)
Query: 75 INYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKI 134
I TNIC C +C F+R + A ++ E+ ++ + G T++LF G + + ++
Sbjct: 3 IPVTNICRNRCGYCGFRREPGQPGARLMKPAEVISILKNGVRAGCTEVLFTFGEYAE-EM 61
Query: 135 DYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSLKEVLERLKNAG----------- 183
Y ++ I G+S+ +DY+ + + +++ + NAG
Sbjct: 62 PGYNLMLDEI----------GYSST-LDYLLFLCETAIETGILPHTNAGVMTRSELEALK 110
Query: 184 -LSSIPGAGAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHLCGIKSTATMMFGSVDNEEDV 242
L++ G E + P K+ +R +E R A I T+ ++ G ++ ED
Sbjct: 111 PLNASMGLMLESTASLEAHKDCPGKIP-ERRLETIREAGKLQIPYTSGLLIGIGESREDR 169
Query: 243 VEHLQRVRDLQDETGGFRAFILWSFQPN-NTPLKEEIPSIKKASSNRYLRYLACSRIFLD 301
+E L+ + L E G + I+ +F P TP++ S + + + + +R L
Sbjct: 170 IESLEAITSLHREYGHIQEVIIQNFAPKPGTPME----SFPEPTVEEMMDAVVLARHVLP 225
Query: 302 NIQNIQ--SSWVTQGSMIGQLALLFGANDLGSV 332
+ ++Q + + ++IG+ G DLG +
Sbjct: 226 SDVSVQVAPNLIDPKALIGK-----GVTDLGGI 253
>ref|NP_563376.1| (NC_003366) probable biotin synthetase [Clostridium perfringens]
dbj|BAB82166.1| (AP003194) probable biotin synthetase [Clostridium perfringens]
Length = 347
Score = 45.4 bits (106), Expect = 0.001
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 33 INREEILDLMKNAPL-KELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFK 91
++R+EI+ L+K+ + +EL + A V+++ + + + I +TNIC +C +C +
Sbjct: 14 LSRDEIIALLKDDSINEELFKAADEVRKKYLGDEVH---LRGLIEFTNICKRNCMYCGLR 70
Query: 92 RTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKIDYY 137
R K + Y LS+EEI ++ + G ++ QGG + DYY
Sbjct: 71 RDNKNLNRYRLSHEEIIDFAKKAVGYGYKTLVLQGG-----EDDYY 111
>ref|NP_229074.1| (NC_000853) biotin synthetase, putative [Thermotoga maritima]
pir||D72274 hypothetical protein TM1269 - Thermotoga maritima (strain MSB8)
gb|AAD36344.1|AE001782_5 (AE001782) biotin synthetase, putative [Thermotoga maritima]
Length = 348
Score = 43.9 bits (102), Expect = 0.003
Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 47/266 (17%)
Query: 75 INYTNICFVDCKFCAFKRTLKEKDAYVLSYEEIDQKIEELLAIGGTQILFQGGVHPQLKI 134
I ++N+C +C +C +R K Y ++ EEI ++ + G I+ Q G P
Sbjct: 57 IEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYYMP 116
Query: 135 DYYENLVSHIAQKFPTITIHGFSAVEIDYISKISKLSL----KEVLERLKNAGLSSIPGA 190
D ++V I + +T LSL +E E+ K A GA
Sbjct: 117 DVISDIVKEIKKMGVAVT-----------------LSLGEWPREYYEKWKEA------GA 153
Query: 191 GAEVLSDRVRDVIAPKKLSSDRWIEVHRMAHL-----CGIKSTATMMFGSVDNE-EDVVE 244
+L + + +KL D E +R+ L G ++ A M G +D+V+
Sbjct: 154 DRYLLRHETANPVLHRKLRPDTSFE-NRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVD 212
Query: 245 HLQRVRDLQDETGGFRAFILWSFQPNNTPLKEEIPSIKKASSNRYLRYLACSRIFLDNIQ 304
L +++ + G FI +TPL E KK L+ +A +RI L +
Sbjct: 213 DLLFLKEHDFDMVGIGPFI----PHPDTPLANE----KKGDFTLTLKMVALTRILLPD-S 263
Query: 305 NIQSSWVTQGSMI---GQLALLFGAN 327
NI ++ G+++ ++ L GAN
Sbjct: 264 NIPAT-TAMGTIVPGGREITLRCGAN 288
>ref|NP_623168.1| (NC_003869) Thiamine biosynthesis enzyme ThiH and related
uncharacterized enzymes [Thermoanaerobacter
tengcongensis]
gb|AAM24772.1| (AE013113) Thiamine biosynthesis enzyme ThiH and related
uncharacterized enzymes [Thermoanaerobacter
tengcongensis]
Length = 501
Score = 42.7 bits (99), Expect = 0.007
Identities = 58/258 (22%), Positives = 113/258 (43%), Gaps = 16/258 (6%)
Query: 48 KELGQRALRVKQRLHPENLTTFIVDRNINYTNICFVDCKFCAFKRTLKEKDAYVLSYEEI 107
+E+ A ++K++++ + TF + +N+C +C +C F+R L+ EE+
Sbjct: 84 QEIFDAAAKIKKKVYDSRIVTFAP---LYCSNLCVNNCVYCGFRRENTVIKRRRLTLEEV 140
Query: 108 DQKIEELLA-IGGTQILFQGGVHPQLKIDYYENLVSHIAQKFPTITIHGFSAVEIDYISK 166
++ E L IG +++ G HP Y + + I + T +G+ + ++
Sbjct: 141 RREAEVLAGEIGHKRLIAVYGEHPTTDAKYIADTIRTI-YEVKVKTKNGYGQIRRVNVN- 198
Query: 167 ISKLSLKEVLERLKNAGLSSIPGAGAEVLSDRVRDVIAPKKL--SSDRW-IEVHRMAHLC 223
+ +S++E LE L++ G+ + E + P+ S +W + H A
Sbjct: 199 AAPMSIEE-LEMLRDVGIGTYQ-VFQETYHHETYKKLHPEGTIKSHYQWRLYCHHRALEA 256
Query: 224 GIKSTAT-MMFGSVDNEEDVVEHLQRVRDLQDETG-GFRAFILWSFQP-NNTPLKEEIPS 280
G+ A ++FG D +V+ L R+L+ G G +P NTP +E S
Sbjct: 257 GVDDVALGVLFGLYDWRFEVMGLLYHARNLEKFFGIGPHTISFPRLEPAANTPFAQE--S 314
Query: 281 IKKASSNRYLRYLACSRI 298
K S + + +A R+
Sbjct: 315 KYKVSDEDFKKLIAVIRL 332
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,617,234
Number of Sequences: 1026957
Number of extensions: 9417319
Number of successful extensions: 24027
Number of sequences better than 1.0e-02: 51
Number of HSP's better than 0.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 23898
Number of HSP's gapped (non-prelim): 54
length of query: 383
length of database: 324,149,939
effective HSP length: 123
effective length of query: 260
effective length of database: 197,834,228
effective search space: 51436899280
effective search space used: 51436899280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)