BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645284|ref|NP_207454.1| hypothetical protein
[Helicobacter pylori 26695]
(338 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207454.1| (NC_000915) hypothetical protein [Helicoba... 664 0.0
ref|NP_223323.1| (NC_000921) putative [Helicobacter pylori ... 620 e-177
ref|NP_282765.1| (NC_002163) putative periplasmic protein [... 100 2e-20
ref|NP_455789.1| (NC_003198) conserved hypothetical protein... 48 2e-04
ref|NP_287917.1| (NC_002655) putative heat shock protein [E... 47 2e-04
ref|NP_637547.1| (NC_003902) conserved hypothetical protein... 46 7e-04
ref|NP_642612.1| (NC_003919) conserved hypothetical protein... 45 0.001
gb|AAC67538.1| (AF081799) developmental protein DG1071 [Dic... 45 0.001
ref|NP_299714.1| (NC_002488) conserved hypothetical protein... 45 0.002
>ref|NP_207454.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64602 hypothetical protein HP0660 - Helicobacter pylori (strain 26695)
gb|AAD07730.1| (AE000579) H. pylori predicted coding region HP0660 [Helicobacter
pylori 26695]
Length = 338
Score = 664 bits (1713), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTQKKNKKFLQKFAQNQNAYAGSENL 60
MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTQKKNKKFLQKFAQNQNAYAGSENL
Sbjct: 1 MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTQKKNKKFLQKFAQNQNAYAGSENL 60
Query: 61 DELLKHAKISSLMFLARAYSKADVQMSIEILKGLLNRSLKDEEKIAVLDLLAKNYFSVGY 120
DELLKHAKISSLMFLARAYSKADVQMSIEILKGLLNRSLKDEEKIAVLDLLAKNYFSVGY
Sbjct: 61 DELLKHAKISSLMFLARAYSKADVQMSIEILKGLLNRSLKDEEKIAVLDLLAKNYFSVGY 120
Query: 121 LQKTKDTVKEILRFSPRNVGALLKLLHAYELEKDYSKALETLECLEELEVVEIETIKNYL 180
LQKTKDTVKEILRFSPRNVGALLKLLHAYELEKDYSKALETLECLEELEVVEIETIKNYL
Sbjct: 121 LQKTKDTVKEILRFSPRNVGALLKLLHAYELEKDYSKALETLECLEELEVVEIETIKNYL 180
Query: 181 YLMHLIENKEDVAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDATKRLENVIDLLWD 240
YLMHLIENKEDVAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDATKRLENVIDLLWD
Sbjct: 181 YLMHLIENKEDVAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDATKRLENVIDLLWD 240
Query: 241 MNIPAFILEKHALLQDIARSQGLLLDNKPCQVFELEVLRALLNSPIKARLTFEYRCKHCK 300
MNIPAFILEKHALLQDIARSQGLLLDNKPCQVFELEVLRALLNSPIKARLTFEYRCKHCK
Sbjct: 241 MNIPAFILEKHALLQDIARSQGLLLDNKPCQVFELEVLRALLNSPIKARLTFEYRCKHCK 300
Query: 301 QIFPFESHRCPVCYQLAFMDMVLKISKESYGSGLNARN 338
QIFPFESHRCPVCYQLAFMDMVLKISKESYGSGLNARN
Sbjct: 301 QIFPFESHRCPVCYQLAFMDMVLKISKESYGSGLNARN 338
>ref|NP_223323.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71911 hypothetical protein jhp0605 - Helicobacter pylori (strain J99)
gb|AAD06186.1| (AE001492) putative [Helicobacter pylori J99]
Length = 335
Score = 620 bits (1599), Expect = e-177
Identities = 313/335 (93%), Positives = 326/335 (96%)
Query: 1 MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTQKKNKKFLQKFAQNQNAYAGSENL 60
MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFT+K+NKKFLQKFAQNQNAYA SENL
Sbjct: 1 MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTRKRNKKFLQKFAQNQNAYASSENL 60
Query: 61 DELLKHAKISSLMFLARAYSKADVQMSIEILKGLLNRSLKDEEKIAVLDLLAKNYFSVGY 120
DELLKHAKISSLMFLARAYSKADV+MSIEILKGLLNR LKDEEKIAVLDLLAKNYFSVGY
Sbjct: 61 DELLKHAKISSLMFLARAYSKADVEMSIEILKGLLNRPLKDEEKIAVLDLLAKNYFSVGY 120
Query: 121 LQKTKDTVKEILRFSPRNVGALLKLLHAYELEKDYSKALETLECLEELEVVEIETIKNYL 180
LQKTKDTVKEILRFSPRNV ALLKLLHAYELEKDYSKALETLECLEELEV +IETIKNYL
Sbjct: 121 LQKTKDTVKEILRFSPRNVEALLKLLHAYELEKDYSKALETLECLEELEVPKIETIKNYL 180
Query: 181 YLMHLIENKEDVAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDATKRLENVIDLLWD 240
YLMHLIENKED AKILHVSKASLDLKKIALNHLKSHDENLFWQEID T+RLENVIDLLWD
Sbjct: 181 YLMHLIENKEDAAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDTTERLENVIDLLWD 240
Query: 241 MNIPAFILEKHALLQDIARSQGLLLDNKPCQVFELEVLRALLNSPIKARLTFEYRCKHCK 300
MNIPAFILEKHALLQDIARSQGLLLD+KPCQ+FELEVLRALL+SPIKA LTFEYRCKHCK
Sbjct: 241 MNIPAFILEKHALLQDIARSQGLLLDHKPCQIFELEVLRALLHSPIKASLTFEYRCKHCK 300
Query: 301 QIFPFESHRCPVCYQLAFMDMVLKISKESYGSGLN 335
QIFPFESHRCPVCYQLAFMDMVLKISK+++ G++
Sbjct: 301 QIFPFESHRCPVCYQLAFMDMVLKISKKTHAMGVD 335
>ref|NP_282765.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||C81260 probable periplasmic protein Cj1637c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73625.1| (AL139079) putative periplasmic protein [Campylobacter jejuni]
Length = 328
Score = 100 bits (249), Expect = 2e-20
Identities = 86/340 (25%), Positives = 158/340 (46%), Gaps = 33/340 (9%)
Query: 1 MQHFNFLYKDSLFSIALFTFIIALVILLEQARAYFTQKKNKKFLQKFAQN---QNAYAGS 57
M F Y+D L + + T ++ +V + F K ++ L+KF + NA+
Sbjct: 1 MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKLEKFIKKFEMDNAHK-- 58
Query: 58 ENLDELLKHAKIS--SLMFLARAYSKA-DVQMSIEILKGLLNRSLKDEEKIAVLDLLAKN 114
ELL+++ +S +L FLA ++K+ + + + +I L + +E+ + LAK
Sbjct: 59 ----ELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQEREFIFLSLAKV 114
Query: 115 YFSVGYLQKTKDTVKEILRFSPRNVGALLKLLHAYELEKDYSKALETLECLEELEVVEIE 174
YF G+L++ K+ + + L+ PRN+ AL L Y + Y + LE LECL EL +++
Sbjct: 115 YFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLELLECLFELN-EDVQ 173
Query: 175 TIKNYLYLMHL----IENKEDVAKILHVSKASLDLKKIALNHLKSHDENLFWQEIDATKR 230
++++ + L I ++E K+L + L L ++F +
Sbjct: 174 KERDFIKALELCTFNITDEEKKKKLLEFKIEDNPM----LGRLVFEKYHMF-----LGQN 224
Query: 231 LENVIDLLWDMNIPAFILEKHALLQDIARSQGLLLDNKPCQVF-----ELEVLRALLNSP 285
++ DLL+ N AF LE L + + G + + F ++L+ L ++
Sbjct: 225 FFDICDLLYREN-EAFNLENQDFL-EFFYALGKISKHDDTHQFVFKNSNFKMLKILKDNS 282
Query: 286 IKARLTFEYRCKHCKQIFPFESHRCPVCYQLAFMDMVLKI 325
A L F YRC CK + P + CPVCY+ ++ ++
Sbjct: 283 FNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEV 322
>ref|NP_455789.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_460667.1| (NC_003197) putative N-acetylglucosaminyl transferase [Salmonella
typhimurium LT2]
gb|AAL20626.1| (AE008776) putative N-acetylglucosaminyl transferase [Salmonella
typhimurium LT2]
emb|CAD08423.1| (AL627269) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 389
Score = 47.8 bits (112), Expect = 2e-04
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 80 SKADVQMSIEILKGLL-NRSLKDEEKIAVLDLLAKNYFSVGYLQKTKDTVKEILRFSPRN 138
S+ +V +I I + L+ + SL E+++ + L ++Y + G + +D ++ +
Sbjct: 81 SRGEVDRAIRIHQTLMESASLTYEQRLLAVQQLGRDYMAAGLYDRAEDMFNQLTDETEFR 140
Query: 139 VGALLKLLHAYELEKDYSKALETLECLEEL 168
VGAL +LL Y+L D+ KA+E E L +L
Sbjct: 141 VGALQQLLQIYQLTSDWQKAIEVAERLVKL 170
>ref|NP_287917.1| (NC_002655) putative heat shock protein [Escherichia coli O157:H7
EDL933]
ref|NP_309880.1| (NC_002695) putative heat shock protein [Escherichia coli O157:H7]
ref|NP_415796.1| (NC_000913) putative heat shock protein [Escherichia coli K12]
sp|P45576|YCIM_ECOLI Hypothetical protein yciM precursor
pir||C64876 yciM protein precursor - Escherichia coli
dbj|BAA14834.1| (D90766) ORF_ID:o255#5; similar to [SwissProt Accession Number
P45576] [Escherichia coli]
gb|AAC74362.1| (AE000226) putative heat shock protein [Escherichia coli K12]
gb|AAG56533.1|AE005379_1 (AE005379) putative heat shock protein [Escherichia coli O157:H7
EDL933]
dbj|BAB35276.1| (AP002556) putative heat shock protein [Escherichia coli O157:H7]
Length = 389
Score = 47.4 bits (111), Expect = 2e-04
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 80 SKADVQMSIEILKGLL-NRSLKDEEKIAVLDLLAKNYFSVGYLQKTKDTVKEILRFSPRN 138
S+ +V +I I + L+ + SL E+++ + L ++Y + G + +D ++ +
Sbjct: 81 SRGEVDRAIRIHQTLMESASLTYEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFR 140
Query: 139 VGALLKLLHAYELEKDYSKALETLECLEEL----EVVEIETIKNYLYLMHLIENKEDVAK 194
+GAL +LL Y+ ++ KA++ E L +L + VEI L L H+ + D A
Sbjct: 141 IGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAM 200
Query: 195 ILHVSKASLD 204
L A+ D
Sbjct: 201 TLLKKGAAAD 210
>ref|NP_637547.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41471.1| (AE012326) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 392
Score = 45.8 bits (107), Expect = 7e-04
Identities = 24/89 (26%), Positives = 48/89 (52%), Gaps = 1/89 (1%)
Query: 81 KADVQMSIEILKGLLNRS-LKDEEKIAVLDLLAKNYFSVGYLQKTKDTVKEILRFSPRNV 139
+ +V +I + +GL+ R+ L D++++ L L ++Y G L + + E+ + R
Sbjct: 87 RGEVDRAIRLHQGLVQRADLTDQQRVQALLALGEDYMKSGLLDRAETVFTELAQLDQRAP 146
Query: 140 GALLKLLHAYELEKDYSKALETLECLEEL 168
AL L+ Y+ E+D+ KA++ EE+
Sbjct: 147 QALRHLIGIYQAERDWEKAIDNATRYEEV 175
>ref|NP_642612.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37148.1| (AE011866) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 392
Score = 45.4 bits (106), Expect = 0.001
Identities = 24/89 (26%), Positives = 47/89 (51%), Gaps = 1/89 (1%)
Query: 81 KADVQMSIEILKGLLNRS-LKDEEKIAVLDLLAKNYFSVGYLQKTKDTVKEILRFSPRNV 139
+ +V +I + +GL+ R L D++++ L L ++Y G L + + E+ + R
Sbjct: 87 RGEVDRAIRLHQGLVQRGDLTDQQRVQALLALGEDYMKSGLLDRAETVFTELAQLDQRAP 146
Query: 140 GALLKLLHAYELEKDYSKALETLECLEEL 168
AL L+ Y+ E+D+ KA++ EE+
Sbjct: 147 QALRHLIGIYQAERDWEKAIDNATRYEEV 175
>gb|AAC67538.1| (AF081799) developmental protein DG1071 [Dictyostelium discoideum]
Length = 581
Score = 45.4 bits (106), Expect = 0.001
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 20/169 (11%)
Query: 75 LARAY-SKADVQMSIEILKGLLNRSLKDEEKIAVLDLLAKNYFSVGYLQKTKDTVKEILR 133
LA Y SK +I++ +G L +S +E ++ LAK YF +K T+K+ +
Sbjct: 191 LAHIYVSKGLFDNAIKLYEGCLKKSTSPKEIETIIMYLAKVYFDANRFYDSKQTLKKAIH 250
Query: 134 FSPRNVGALLKLLHAYE------LEKDYSKALETLECLEELEVVEIETIKNYLYLMHLIE 187
P N+ L + E LEK A ET ++ELE + L+ +
Sbjct: 251 MYPHNLSIHFNLAISIEMQATIFLEKHQKNATETFNIIKELEFAQ--------RLLTPLA 302
Query: 188 NKEDVAKI-LHVSKA---SLDLKKIALNHLKSHDENLFWQEIDATKRLE 232
N + K+ SKA ++KI ++ L++ E++ E D +K+ E
Sbjct: 303 NTKSTPKLNFSPSKAKTHQTSIEKILVS-LRTEHESIVKIEADLSKKRE 350
>ref|NP_299714.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||G82558 conserved hypothetical protein XF2435 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF85234.1|AE004052_9 (AE004052) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 398
Score = 44.7 bits (104), Expect = 0.002
Identities = 23/81 (28%), Positives = 43/81 (52%), Gaps = 1/81 (1%)
Query: 81 KADVQMSIEILKGLLNR-SLKDEEKIAVLDLLAKNYFSVGYLQKTKDTVKEILRFSPRNV 139
+ ++ +I + +GLL R L D +K+ L L ++Y G L + + E+ + R
Sbjct: 93 RGEIDRAIRLHQGLLKRPDLTDHQKVFALLALGEDYMKSGLLDRAETVFTELAQIDQRAP 152
Query: 140 GALLKLLHAYELEKDYSKALE 160
AL L+ Y+ E+D+ KA++
Sbjct: 153 QALRHLISIYQAERDWEKAID 173
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.137 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,600,208
Number of Sequences: 1026957
Number of extensions: 7434107
Number of successful extensions: 24256
Number of sequences better than 1.0e-02: 9
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 24247
Number of HSP's gapped (non-prelim): 9
length of query: 338
length of database: 324,149,939
effective HSP length: 122
effective length of query: 216
effective length of database: 198,861,185
effective search space: 42954015960
effective search space used: 42954015960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 97 (42.0 bits)