BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645288|ref|NP_207458.1| hypothetical protein
[Helicobacter pylori 26695]
         (171 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223327.1|  (NC_000921) putative [Helicobacter pylori ...   340  4e-93
ref|NP_282143.1|  (NC_002163) hypothetical protein Cj0993c [...    69  3e-11

>ref|NP_223327.1| (NC_000921) putative [Helicobacter pylori J99]
 ref|NP_207458.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 sp|O25375|Y664_HELPY Hypothetical protein HP0664/JHP0609
 pir||H64602 hypothetical protein (HP0664, jhp0609) - Helicobacter pylori
 gb|AAD07731.1| (AE000579) H. pylori predicted coding region HP0664 [Helicobacter
           pylori 26695]
 gb|AAD06177.1| (AE001492) putative [Helicobacter pylori J99]
          Length = 171

 Score =  340 bits (872), Expect = 4e-93
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MEKLPKKRVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEED 60
           MEKLPKKRVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEED
Sbjct: 1   MEKLPKKRVSKTKSQKLIHSLTTQKNRAFLKKISANEMLLELEKGAFKKNEAYFISDEED 60

Query: 61  KNYVLVPDNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKD 120
           KNYVLVPDNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKD
Sbjct: 61  KNYVLVPDNVISLLAENARKAFEARLRAELERDIITQAPIDFEDVREVSLQLLENLRQKD 120

Query: 121 GNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFENFDNSDEENF 171
           GNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFENFDNSDEENF
Sbjct: 121 GNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPFNENNFENFDNSDEENF 171



>ref|NP_282143.1| (NC_002163) hypothetical protein Cj0993c [Campylobacter jejuni]
 pir||F81374 hypothetical protein Cj0993c [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73249.1| (AL139076) hypothetical protein Cj0993c [Campylobacter jejuni]
          Length = 163

 Score = 68.6 bits (166), Expect = 3e-11
 Identities = 37/122 (30%), Positives = 64/122 (52%)

Query: 36  NEMLLELEKGAFKKNEAYFISDEEDKNYVLVPDNVISLLAENARKAFEARLRAELERDII 95
           NE  L LE G+F   E +F+ DE D+ + L+    +  + E+ +++ +      LE+ I 
Sbjct: 40  NEKCLVLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIY 99

Query: 96  TQAPIDFEDVREVSLQLLENLRQKDGNLPNINTLNFVKQIKKEHPNLFFNFDNMFKQPPF 155
            Q P+DF DV  V++  ++   Q      +I+    + +IK+EHPNLF +   M ++   
Sbjct: 100 QQIPVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQ 159

Query: 156 NE 157
           NE
Sbjct: 160 NE 161



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.315    0.133    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,484,225
Number of Sequences: 1026957
Number of extensions: 4090859
Number of successful extensions: 11372
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11370
Number of HSP's gapped (non-prelim): 2
length of query: 171
length of database: 324,149,939
effective HSP length: 112
effective length of query: 59
effective length of database: 209,130,755
effective search space: 12338714545
effective search space used: 12338714545
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 93 (40.4 bits)