BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645291|ref|NP_207461.1| hypothetical protein
[Helicobacter pylori 26695]
         (85 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207461.1|  (NC_000915) hypothetical protein [Helicoba...   176  5e-44
ref|NP_223330.1|  (NC_000921) putative [Helicobacter pylori ...   136  6e-32
ref|NP_602261.1|  (NC_003450) COG1061:DNA or RNA helicases o...    42  0.001

>ref|NP_207461.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64603 hypothetical protein HP0667 - Helicobacter pylori (strain 26695)
 gb|AAD07735.1| (AE000580) H. pylori predicted coding region HP0667 [Helicobacter
          pylori 26695]
          Length = 85

 Score =  176 bits (446), Expect = 5e-44
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MQEISAYTLIKEKLQAIPNLRHKGILFEKISKQFLQEHDSANEYESIDLWYDWKLRGNER 60
          MQEISAYTLIKEKLQAIPNLRHKGILFEKISKQFLQEHDSANEYESIDLWYDWKLRGNER
Sbjct: 1  MQEISAYTLIKEKLQAIPNLRHKGILFEKISKQFLQEHDSANEYESIDLWYDWKLRGNER 60

Query: 61 DKGIDIVITTFKQRIHRCAMQIPSK 85
          DKGIDIVITTFKQRIHRCAMQIPSK
Sbjct: 61 DKGIDIVITTFKQRIHRCAMQIPSK 85



>ref|NP_223330.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71909 hypothetical protein jhp0612 - Helicobacter pylori (strain J99)
 gb|AAD06193.1| (AE001493) putative [Helicobacter pylori J99]
          Length = 450

 Score =  136 bits (342), Expect = 6e-32
 Identities = 66/70 (94%), Positives = 66/70 (94%)

Query: 1  MQEISAYTLIKEKLQAIPNLRHKGILFEKISKQFLQEHDSANEYESIDLWYDWKLRGNER 60
          MQEISAY LIKEKL AIPN RHKG LFEKISKQFLQEHDSANEYESIDLWYDWKLRGNER
Sbjct: 1  MQEISAYELIKEKLHAIPNQRHKGSLFEKISKQFLQEHDSANEYESIDLWYDWKLRGNER 60

Query: 61 DKGIDIVITT 70
          DKGIDIVITT
Sbjct: 61 DKGIDIVITT 70



>ref|NP_602261.1| (NC_003450) COG1061:DNA or RNA helicases of superfamily II
          [Corynebacterium glutamicum]
 dbj|BAC00463.1| (AP005283) Restriction enzymes type I helicase subunits and
          related helicases [Corynebacterium glutamicum ATCC
          13032]
          Length = 1643

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 4  ISAYTLIKEKLQAIPNLRHKGILFEKISKQFLQEHDS-ANEYESIDLWYDWKLRGNERDK 62
          +S  T     L+ +P+   +G+ FEK+   F++   + + E++ +  W DW   G   D 
Sbjct: 1  MSTITDAVSALRTLPSQSAQGLAFEKLMVNFIKSDPTLSTEFDEVHRWVDWPYNGGTMDT 60

Query: 63 GIDIV 67
          GID+V
Sbjct: 61 GIDLV 65



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.321    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,497,984
Number of Sequences: 1026957
Number of extensions: 1712250
Number of successful extensions: 3519
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3517
Number of HSP's gapped (non-prelim): 3
length of query: 85
length of database: 324,149,939
effective HSP length: 61
effective length of query: 24
effective length of database: 261,505,562
effective search space: 6276133488
effective search space used: 6276133488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)