BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645294|ref|NP_207464.1| hypothetical protein
[Helicobacter pylori 26695]
         (449 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207464.1|  (NC_000915) hypothetical protein [Helicoba...   909  0.0
ref|NP_044795.1|  (NC_001823) Orf717 [Reclinomonas americana...    44  0.004

>ref|NP_207464.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64603 hypothetical protein HP0670 - Helicobacter pylori (strain 26695)
 gb|AAD07738.1| (AE000580) H. pylori predicted coding region HP0670 [Helicobacter
           pylori 26695]
          Length = 449

 Score =  909 bits (2350), Expect = 0.0
 Identities = 449/449 (100%), Positives = 449/449 (100%)

Query: 1   MITSLGGVEYFERQCLAFLKNPQTNPQNEQYIPGVFSYQENKISFSFLVLGEIEEIHSLQ 60
           MITSLGGVEYFERQCLAFLKNPQTNPQNEQYIPGVFSYQENKISFSFLVLGEIEEIHSLQ
Sbjct: 1   MITSLGGVEYFERQCLAFLKNPQTNPQNEQYIPGVFSYQENKISFSFLVLGEIEEIHSLQ 60

Query: 61  YQTLYIVDNKKRYTLYKLYDRIILGHTLGYSAPITLYYEWLFDDWIDPEKIMGDRFVCRT 120
           YQTLYIVDNKKRYTLYKLYDRIILGHTLGYSAPITLYYEWLFDDWIDPEKIMGDRFVCRT
Sbjct: 61  YQTLYIVDNKKRYTLYKLYDRIILGHTLGYSAPITLYYEWLFDDWIDPEKIMGDRFVCRT 120

Query: 121 NYLESFFTTKKHLLPDTLFKVDESGCESYHENNDKDFILQSFYIQNDFLSQRYEKDKIKA 180
           NYLESFFTTKKHLLPDTLFKVDESGCESYHENNDKDFILQSFYIQNDFLSQRYEKDKIKA
Sbjct: 121 NYLESFFTTKKHLLPDTLFKVDESGCESYHENNDKDFILQSFYIQNDFLSQRYEKDKIKA 180

Query: 181 KSNLIPKRQNRLLTYQFDLSLECNIIFETLEKLALIAGAIKNFFILIYAHSNFDIQIDYI 240
           KSNLIPKRQNRLLTYQFDLSLECNIIFETLEKLALIAGAIKNFFILIYAHSNFDIQIDYI
Sbjct: 181 KSNLIPKRQNRLLTYQFDLSLECNIIFETLEKLALIAGAIKNFFILIYAHSNFDIQIDYI 240

Query: 241 QFKLSNKDITAIRNTYKKDKKSMEIDLYGIAINFQRIDNFSVILEKWIVFYIKDNRDFQL 300
           QFKLSNKDITAIRNTYKKDKKSMEIDLYGIAINFQRIDNFSVILEKWIVFYIKDNRDFQL
Sbjct: 241 QFKLSNKDITAIRNTYKKDKKSMEIDLYGIAINFQRIDNFSVILEKWIVFYIKDNRDFQL 300

Query: 301 ASILDIINKKDPIIHLYLDMFVLISMIESFLKKPQQTKLHEKLSEFFKISLSRTKCDQTK 360
           ASILDIINKKDPIIHLYLDMFVLISMIESFLKKPQQTKLHEKLSEFFKISLSRTKCDQTK
Sbjct: 301 ASILDIINKKDPIIHLYLDMFVLISMIESFLKKPQQTKLHEKLSEFFKISLSRTKCDQTK 360

Query: 361 NYFNDKCQEDLIQQIVDCRNSLAHGRSLKLDTNKATDISHAFIDFKQIVIEFFFGEIGLS 420
           NYFNDKCQEDLIQQIVDCRNSLAHGRSLKLDTNKATDISHAFIDFKQIVIEFFFGEIGLS
Sbjct: 361 NYFNDKCQEDLIQQIVDCRNSLAHGRSLKLDTNKATDISHAFIDFKQIVIEFFFGEIGLS 420

Query: 421 DFITNNFGFLNKVKLRNPPKTEKITEPNR 449
           DFITNNFGFLNKVKLRNPPKTEKITEPNR
Sbjct: 421 DFITNNFGFLNKVKLRNPPKTEKITEPNR 449



>ref|NP_044795.1| (NC_001823) Orf717 [Reclinomonas americana]
 pir||S78177 hypothetical protein 717 - Reclinomonas americana (ATCC 50394)
           mitochondrion
 gb|AAD11910.1| (AF007261) Orf717 [Reclinomonas americana]
          Length = 717

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 65/276 (23%), Positives = 124/276 (44%), Gaps = 38/276 (13%)

Query: 14  QCLAFLKNPQTNPQNEQ-----YIPGVFSYQENKIS--FSFLVLGEIEE--IHSLQYQTL 64
           QCL  + N  TN  N+       I  +F+ ++N I+  FS  +  + ++  I +++ Q+ 
Sbjct: 446 QCLNRILNTNTNIINKNKIEILIIDSLFTNEQNDITNKFSLYITNQTKQKNIVNIRNQSQ 505

Query: 65  YIVDNKKR-YTLYKLYDRIILGHTLGYSAPITLYYEWLFDDWIDPEKIMGDRFVCRTNYL 123
              DN    Y L K   +II    + Y   I    +++     D +K+  + F+   +YL
Sbjct: 506 KKSDNTNDFYQLLKNTQKIINKEYI-YYLNIVFLTQYVQRIARDIQKMPHEFFIYFLHYL 564

Query: 124 ESFFTTKKHLLPDTLFKVDESGCESYHENNDKDFILQSFYIQNDFLSQRYEKDKIKAKSN 183
           ++ +          LF + +       + N+  F+ QS  I+  F  + Y+KD       
Sbjct: 565 KNKY----------LFCIYKQNTSYKIKKNNNYFLWQSL-IEEIFKKKIYKKDINLNNLG 613

Query: 184 LIPKRQNRLLTYQFDLSLECNIIFET--LEKLALIAGAIKNFFILIYAHSNFDIQIDYIQ 241
           +  +++N++LT +   +L+   I+++  + K        +NF + I    NF + I    
Sbjct: 614 IHIQKKNKILTKKESYNLKILSIYQSQYINK--------ENFSLFITKKENFYLPIIQFI 665

Query: 242 FKLSNKDITAIRNTYKKDKKSMEIDLYGIAINFQRI 277
            KL+N+        YKKDKK+++ +LY   I   +I
Sbjct: 666 AKLNNEI------NYKKDKKTIKNELYLYFIQLSQI 695



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.324    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,415,304
Number of Sequences: 1026957
Number of extensions: 12086261
Number of successful extensions: 25802
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25799
Number of HSP's gapped (non-prelim): 4
length of query: 449
length of database: 324,149,939
effective HSP length: 124
effective length of query: 325
effective length of database: 196,807,271
effective search space: 63962363075
effective search space used: 63962363075
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 99 (42.7 bits)