BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645297|ref|NP_207467.1| hypothetical protein
[Helicobacter pylori 26695]
(426 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207467.1| (NC_000915) hypothetical protein [Helicoba... 863 0.0
gb|AAC69254.1| (AF025966) hypothetical protein [Helicobacte... 101 1e-20
ref|NP_223334.1| (NC_000921) putative [Helicobacter pylori ... 60 5e-08
ref|NP_223632.1| (NC_000921) putative [Helicobacter pylori ... 59 1e-07
ref|NP_222748.1| (NC_000921) putative [Helicobacter pylori ... 58 2e-07
ref|NP_207222.1| (NC_000915) hypothetical protein [Helicoba... 57 5e-07
ref|NP_224022.1| (NC_000921) putative [Helicobacter pylori ... 49 1e-04
emb|CAC18335.1| (AJ291748) Myb2 protein [Plasmodium falcipa... 48 2e-04
ref|NP_206832.1| (NC_000915) hypothetical protein [Helicoba... 47 6e-04
>ref|NP_207467.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64604 hypothetical protein HP0673 - Helicobacter pylori (strain 26695)
gb|AAD07739.1| (AE000580) H. pylori predicted coding region HP0673 [Helicobacter
pylori 26695]
Length = 426
Score = 863 bits (2231), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MAVRFGIIFISDSIDDYKAKQLRSILERKKECNFIWFNESSAIIHNTPKVFEGESFFDHL 60
MAVRFGIIFISDSIDDYKAKQLRSILERKKECNFIWFNESSAIIHNTPKVFEGESFFDHL
Sbjct: 1 MAVRFGIIFISDSIDDYKAKQLRSILERKKECNFIWFNESSAIIHNTPKVFEGESFFDHL 60
Query: 61 FVSAKITAFVVSTNESDTIFNLKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELVS 120
FVSAKITAFVVSTNESDTIFNLKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELVS
Sbjct: 61 FVSAKITAFVVSTNESDTIFNLKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELVS 120
Query: 121 NANDFRGVFGEVLGIVKDTFGDLLQLLTNLKNKEIEFNFHKKINYGLPFGIIFIASNSDN 180
NANDFRGVFGEVLGIVKDTFGDLLQLLTNLKNKEIEFNFHKKINYGLPFGIIFIASNSDN
Sbjct: 121 NANDFRGVFGEVLGIVKDTFGDLLQLLTNLKNKEIEFNFHKKINYGLPFGIIFIASNSDN 180
Query: 181 PIDIDNKTKKLKSCFRDDESNCFIDCPITIEDYLILDNLKSCFVIQNKPNVTLFDNDEND 240
PIDIDNKTKKLKSCFRDDESNCFIDCPITIEDYLILDNLKSCFVIQNKPNVTLFDNDEND
Sbjct: 181 PIDIDNKTKKLKSCFRDDESNCFIDCPITIEDYLILDNLKSCFVIQNKPNVTLFDNDEND 240
Query: 241 RPFNLKRYLLGLKEKLGFEPTGIFYCENANTHKIELIGNDSDFREVLLEFSENIPKAPNE 300
RPFNLKRYLLGLKEKLGFEPTGIFYCENANTHKIELIGNDSDFREVLLEFSENIPKAPNE
Sbjct: 241 RPFNLKRYLLGLKEKLGFEPTGIFYCENANTHKIELIGNDSDFREVLLEFSENIPKAPNE 300
Query: 301 LPQFLTNFKNSKIPNGNISFSPPKNSPSISSYALSDKIKREVRDTFDRYLWHGYSKIPQE 360
LPQFLTNFKNSKIPNGNISFSPPKNSPSISSYALSDKIKREVRDTFDRYLWHGYSKIPQE
Sbjct: 301 LPQFLTNFKNSKIPNGNISFSPPKNSPSISSYALSDKIKREVRDTFDRYLWHGYSKIPQE 360
Query: 361 KRIAKIKEQVKEEIKLNPSFRNYRVDSEQNRKINEIAEGLKSGKIIGKKVIANAFDLNAS 420
KRIAKIKEQVKEEIKLNPSFRNYRVDSEQNRKINEIAEGLKSGKIIGKKVIANAFDLNAS
Sbjct: 361 KRIAKIKEQVKEEIKLNPSFRNYRVDSEQNRKINEIAEGLKSGKIIGKKVIANAFDLNAS 420
Query: 421 LLFYYS 426
LLFYYS
Sbjct: 421 LLFYYS 426
>gb|AAC69254.1| (AF025966) hypothetical protein [Helicobacter pylori]
Length = 165
Score = 101 bits (252), Expect = 1e-20
Identities = 65/153 (42%), Positives = 89/153 (57%), Gaps = 16/153 (10%)
Query: 58 DHLFVSAKITAFVVS--------TNESDTIFNLKNYLLVLAKNLNNRDIWYCENTICDKK 109
D + + +IT+F+V N+ FNLKNYLLVLAK +YC C+
Sbjct: 13 DFVRIEREITSFLVFQNDRSVTLNNDPSATFNLKNYLLVLAKK------FYCSVCYCENI 66
Query: 110 GTYNIEIELVSNANDFRGVFGEVLGIVKDTFGDLLQLLTNLKNKEIEFNFHKKI-NYGLP 168
T IE + +N +DF + E I + +L Q L +LK+K IEFNFHKKI N LP
Sbjct: 67 NTQKIEW-ISTNHSDFGEILQEFSDITSLSPNELPQFLADLKDKIIEFNFHKKIINNNLP 125
Query: 169 FGIIFIASNSDNPIDIDNKTKKLKSCFRDDESN 201
FGIIFI S+ +N I+I++K KKL+SCF E++
Sbjct: 126 FGIIFIVSDPENLININDKNKKLESCFHYYENS 158
Score = 77.0 bits (188), Expect = 4e-13
Identities = 58/146 (39%), Positives = 79/146 (53%), Gaps = 23/146 (15%)
Query: 203 FIDCPI--TIEDYLILDN-LKSCFVIQNKPNVTLFDNDENDRPFNLKRYLLGLKEKLGFE 259
F +C + T D++ ++ + S V QN +VTL N++ FNLK YLL L +K
Sbjct: 2 FEECAVFYTDADFVRIEREITSFLVFQNDRSVTL--NNDPSATFNLKNYLLVLAKKFY-- 57
Query: 260 PTGIFYCENANTHKIELIG-NDSDFREVLLEFSENIPKAPNELPQFLTNFK--------N 310
+ YCEN NT KIE I N SDF E+L EFS+ +PNELPQFL + K +
Sbjct: 58 -CSVCYCENINTQKIEWISTNHSDFGEILQEFSDITSLSPNELPQFLADLKDKIIEFNFH 116
Query: 311 SKIPNGNISF------SPPKNSPSIS 330
KI N N+ F S P+N +I+
Sbjct: 117 KKIINNNLPFGIIFIVSDPENLININ 142
>ref|NP_223334.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71910 hypothetical protein jhp0616 - Helicobacter pylori (strain J99)
gb|AAD06190.1| (AE001493) putative [Helicobacter pylori J99]
Length = 263
Score = 60.1 bits (144), Expect = 5e-08
Identities = 61/205 (29%), Positives = 86/205 (41%), Gaps = 58/205 (28%)
Query: 223 FVIQNKPNVTLFDNDENDRPFNLKRYLLGLKEKLGFEPTGIFYC------ENANTHKIEL 276
FV +N+P+ T FNLK YLL L K+ PT I YC +N NT +I+
Sbjct: 85 FVYENEPSAT----------FNLKSYLLVLA-KMHCNPTAICYCGNKQDAQNTNTKEIKF 133
Query: 277 I-------GNDSDFREVLLEFSENIPKAPNELPQFLTNFKNSKIPNGNISFSPPKNSPSI 329
+ G + D + V L S ++ +L FL + N P N P I
Sbjct: 134 LSAKSHDFGKEMDSKSVELSNSNTFIQSLLKLGSFLHGKTIESLNN-------PTNYPPI 186
Query: 330 SSYALSDKIKREVRDTFDRYLWHGYSKIPQEKRIAKIKEQVK-EEIKLNPSFRNYRVDSE 388
+ + +A K V+ EE + N +F +YR S
Sbjct: 187 N--------------------------LVVTPALAPWKTTVEIEEHRKNITFDHYRQSSA 220
Query: 389 QNRKINEIAEGLKSGKIIGKKVIAN 413
QN KINEIA LK G+++ K+IAN
Sbjct: 221 QNIKINEIANDLKQGEVVSNKLIAN 245
>ref|NP_223632.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71873 hypothetical protein jhp0914 - Helicobacter pylori (strain J99)
gb|AAD06485.1| (AE001520) putative [Helicobacter pylori J99]
Length = 411
Score = 58.9 bits (141), Expect = 1e-07
Identities = 63/222 (28%), Positives = 98/222 (43%), Gaps = 45/222 (20%)
Query: 209 TIEDYLILDNLKSCFVIQNKPNVTLFDNDENDRPFNLKRYLLGLKEKLGFEPTGIFYCEN 268
+++D L+ D S FV QN+P+ T FNLK+ LL L F I YC+N
Sbjct: 208 SLKDGLLTDKETSFFVFQNEPSDT----------FNLKKTLLVLAR--AFSQAAICYCQN 255
Query: 269 ANTHKIELIGND-SDFREVLLEFSENIPKAPNELPQFLTNFKN------SKIPNG--NIS 319
A+ ++++LI + + EV F+ AP +LPQFLT K+ K PN
Sbjct: 256 ASANEVDLISTEPGSYGEVWDTFNGIAFSAPVQLPQFLTRLKDKVYTFFKKQPNSGYGTD 315
Query: 320 FSPPKNSPSISSYALSDKIKREVRDTFDRYL------------WHGYSKIPQEKRIAKIK 367
F + ++ D++ + F+ Y+ +GY K+ I +I
Sbjct: 316 FDGIAKTQIKAAILPIDRLS----EPFESYIVGSIKGRQSMARAYGYPKV---FTIDEIS 368
Query: 368 EQVKEEIKLNPSFR-----NYRVDSEQNRKINEIAEGLKSGK 404
KE IK R YR+ ++QN +I +I+ L GK
Sbjct: 369 GWEKETIKSRDYERRNLSKTYRLSAKQNLEIIKISNALAQGK 410
Score = 48.1 bits (113), Expect = 2e-04
Identities = 40/106 (37%), Positives = 51/106 (47%), Gaps = 15/106 (14%)
Query: 65 KITAFVVSTNESDTIFNLKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELVSNAND 124
K T+F V NE FNLK LLVLA+ + I YC+N + E++L+S
Sbjct: 217 KETSFFVFQNEPSDTFNLKKTLLVLARAFSQAAICYCQNASAN-------EVDLISTE-- 267
Query: 125 FRGVFGEVL----GIVKDTFGDLLQLLTNLKNKEIEFNFHKKINYG 166
G +GEV GI L Q LT LK+K F F K+ N G
Sbjct: 268 -PGSYGEVWDTFNGIAFSAPVQLPQFLTRLKDKVYTF-FKKQPNSG 311
>ref|NP_222748.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71982 hypothetical protein jhp0026 - Helicobacter pylori (strain J99)
gb|AAD05610.1| (AE001442) putative [Helicobacter pylori J99]
Length = 565
Score = 58.2 bits (139), Expect = 2e-07
Identities = 59/236 (25%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 210 IEDYLILDNLKSCFVIQNKPNVTLFDNDENDRPFNLKRYLLGLKEKLGFEPTGIFYCENA 269
+ D L+ S FV QN+P+ FNLK LL L + F I YC+NA
Sbjct: 238 LNDPLLPSKEVSFFVFQNEPS----------NSFNLKDQLLDLAKY--FNQEAICYCQNA 285
Query: 270 NTHKIELI-GNDSDFREVLLEFS---------ENIPKAPNELPQFLTNFKNSKIPNGNIS 319
T K++L+ + DF +V + F+ ++I + N++ F F N +
Sbjct: 286 ETGKVDLVLATEKDFGKVDMTFTGITFTIPLTQSITRLHNKVYTF---FDKQGKDNYGVF 342
Query: 320 FSPPKNSP--SISSYALSDKIKREVRDTFDRYL----WHGYSKIPQEKRIAKIKEQVKEE 373
F + ++S ++D+ R + + ++ +HG + I K + Q +
Sbjct: 343 FDELSTTKLKAMSIPKIADEFYRHLENRVKSFIRARQYHGSPRTFDADDIEKYELQAIKR 402
Query: 374 IKLN--PSFRNYRVDSEQNRKINEIAEGLKSGKIIGK----KVIANAFDLNASLLF 423
+ L ++++ N KIN +A L+ GK + K KV+AN D +A F
Sbjct: 403 LDLQRCAKSKSFKASYNHNIKINNLANALRQGKEVSKTLITKVLANTIDTDAGYCF 458
Score = 44.7 bits (104), Expect = 0.002
Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 26/156 (16%)
Query: 18 KAKQLRSILERKKECNFIWFNESSAIIHNTPKVFEGESFFDHLFVSAKITAFVVSTNESD 77
+ ++L+S+L++K+ +F+ + + + + + D L S +++ FV NE
Sbjct: 210 RTQELKSLLDQKR--HFLGYLQVTG--------YWKDKLNDPLLPSKEVSFFVFQ-NEPS 258
Query: 78 TIFNLKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELV-SNANDFRGVFGEVLGIV 136
FNLK+ LL LAK N I YC+N K ++LV + DF V GI
Sbjct: 259 NSFNLKDQLLDLAKYFNQEAICYCQNAETGK-------VDLVLATEKDFGKVDMTFTGI- 310
Query: 137 KDTFG-DLLQLLTNLKNKEIEFNFHK--KINYGLPF 169
TF L Q +T L NK F F K K NYG+ F
Sbjct: 311 --TFTIPLTQSITRLHNKVYTF-FDKQGKDNYGVFF 343
>ref|NP_207222.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
ref|NP_208202.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64696 hypothetical protein HP0424/HP1411 - Helicobacter pylori (strain
26695)
gb|AAD07493.1| (AE000558) H. pylori predicted coding region HP0424 [Helicobacter
pylori 26695]
gb|AAD08453.1| (AE000641) H. pylori predicted coding region HP1411 [Helicobacter
pylori 26695]
Length = 619
Score = 56.6 bits (135), Expect = 5e-07
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 18 KAKQLRSILERKKECNFIWFNESSAIIHNTPKVFEGESFFDHLFVSAKITAFVVSTNESD 77
+AK+L+S LE K++ FI F ++ + + P+ F+ + T+F+V NE
Sbjct: 220 RAKKLQSYLENKRD--FIGFVQALNSLKDNPQ---------DPFLPNEETSFLVFANEPT 268
Query: 78 TIFNLKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELVSNANDFRGVFGEVLGIVK 137
+FNL++YLLVLA+ N + I YCE+ IE+ S DF I
Sbjct: 269 IVFNLRDYLLVLAQIFNQQAICYCESKC-------PIELINASPGKDFNKTQDSFPDIKF 321
Query: 138 DTFGDLLQLLTNLKNK-EIEFNFHKKINYGLPFGII 172
T L Q L LKNK F+ H + G+ F I
Sbjct: 322 STPNQLEQSLNALKNKLAAFFSKHPDKHNGMEFNEI 357
Score = 56.2 bits (134), Expect = 7e-07
Identities = 68/265 (25%), Positives = 112/265 (41%), Gaps = 34/265 (12%)
Query: 173 FIASNSDNPIDIDNKTKKLKSCFRDDESNCFIDCPITIEDYLILDNLKSCFVIQNKPNVT 232
F+A P + KKL+S + FI + + DN + F+ + +
Sbjct: 206 FVAKYRYTPKQNTERAKKLQSYLENKRD--FIGFVQALNS--LKDNPQDPFLPNEETSFL 261
Query: 233 LFDNDENDRPFNLKRYLLGLKEKLGFEPTGIFYCENANTHKIELIGNDSDFREVLLEFSE 292
+F N E FNL+ YLL L + F I YCE+ ++ DF + F +
Sbjct: 262 VFAN-EPTIVFNLRDYLLVLAQI--FNQQAICYCESKCPIELINASPGKDFNKTQDSFPD 318
Query: 293 NIPKAPNELPQFLTNFKN------SKIPN--GNISFSP-----------PKNSPSISSYA 333
PN+L Q L KN SK P+ + F+ P++S +
Sbjct: 319 IKFSTPNQLEQSLNALKNKLAAFFSKHPDKHNGMEFNEIAKTQIEALYMPQSSDGFDDFR 378
Query: 334 --LSDKIKREVRDTFDRYLWHGYSKIPQEKRIAKIKEQVKEEIKLNPSFRNYRVDSEQNR 391
L + IK +R +RY G+ KI +A I+++ ++ I+ R + +QN
Sbjct: 379 KHLEESIKSFIRAKKNRY---GFPKIFD---VADIEQEERKVIEWREKERASKQSYKQNL 432
Query: 392 KINEIAEGLKSGKIIGKKVIANAFD 416
+IN+IA LK K++ K+ I + D
Sbjct: 433 QINKIANDLKRDKVVDKRTILSVID 457
>ref|NP_224022.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71824 hypothetical protein jhp1304 - Helicobacter pylori (strain J99)
gb|AAD06882.1| (AE001553) putative [Helicobacter pylori J99]
Length = 309
Score = 48.9 bits (115), Expect = 1e-04
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 18 KAKQLRSILERKKECNFIWFNESSAIIHNTPKVFEGESFFDHLFVSAKITAFVVSTNESD 77
+AK+L+S LE K++ FI F ++ + ++P+ F+ + +F+V NE
Sbjct: 220 RAKKLQSYLESKRD--FIGFVQTLNSLKDSPQ---------DPFLPNEEISFLVFANEPT 268
Query: 78 TIFNLKNYLLVLAKNLNNRDIWYCEN 103
IFNL++YLLVLA+ N + I YCE+
Sbjct: 269 IIFNLRDYLLVLAQIFNQQAICYCES 294
>emb|CAC18335.1| (AJ291748) Myb2 protein [Plasmodium falciparum 3D7]
Length = 915
Score = 48.1 bits (113), Expect = 2e-04
Identities = 80/340 (23%), Positives = 136/340 (39%), Gaps = 62/340 (18%)
Query: 82 LKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELVSNANDFRGVFGEVLGIVKDTFG 141
LK + V + N DI Y N KK ++++E +++A ++ G+ +
Sbjct: 219 LKGFYDVKDEQNINDDI-YENNKTNQKKSIKSMDVENINDAMEYNKNKGKRQH--QHNNN 275
Query: 142 DLLQLLTNLKNKEIEFN----FHKKINYGLPFGIIFIASNSDNPIDIDNKTKKLKSCFRD 197
+ LL+ ++N + +FN K++ LP I+ ++N ID + K S F D
Sbjct: 276 EEANLLSTIENYDKQFNELSHLRKRVRLNLPEPIL-----NENEIDEIIQINKEASAFND 330
Query: 198 DESNCFIDCPITIEDYLILDNLKSC-FVIQNKPNVTLFDNDENDRPFNLKRYLLGLKEKL 256
+ PI IL +++S F++ NK F N E D N + KL
Sbjct: 331 IIKDQNDKLPINN----ILPSIESSSFILNNKDK---FSNLETDFYNNNNNKSIAFSSKL 383
Query: 257 GFEPTGIFYCENANTHKIELIGNDSDFREVLLEFSENI-----PKAPNELPQFLTN--FK 309
+ I IG ++D+ E E NI P++L TN
Sbjct: 384 DLSIQQAAKNIISRKMNIPFIGMNNDYNEEEFERKNNIFQKSNKNVPDDLEYDDTNNYHN 443
Query: 310 NSKIPNGNISFSPPKNSPSISSYALSDKIKREVRDTFDRYLWHGYSKIPQEKRIAKIKEQ 369
N+ N N SF+ KNS ++ Y+ + EK I ++E+
Sbjct: 444 NNNNNNNNTSFNSIKNSTTL------------------------YNHLDVEKNIKDVQEE 479
Query: 370 VKEEIKLNPSFRNYRVDSEQNRK-----INEIAEGLKSGK 404
++++ KLN D ++N+K N+I +KS K
Sbjct: 480 IEKQKKLNEE------DQQKNQKEKLTIKNKIISDIKSFK 513
>ref|NP_206832.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64523 hypothetical protein HP0030 - Helicobacter pylori (strain 26695)
gb|AAD07107.1| (AE000525) H. pylori predicted coding region HP0030 [Helicobacter
pylori 26695]
Length = 593
Score = 46.6 bits (109), Expect = 6e-04
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 65 KITAFVVSTNESDTIFNLKNYLLVLAKNLNNRDIWYCENTICDKKGTYNIEIELVSNAND 124
K +F V NE + F+LKN+LL+ K I Y I +K TY I++ + ++
Sbjct: 265 KEVSFFVFQNEPSSTFDLKNHLLIWGKQFRQVAICYGGQLIANKNKTYRIDL-ISCRPDN 323
Query: 125 FRGVFGEVLGIVKDTFGDLLQLLTNLKNKEIEFNFHKKINYGL 167
F V+ + GI DL Q LT + + F K GL
Sbjct: 324 FGEVWAKFTGIKFSVPSDLPQALTRINDSVYTFLSRNKEGIGL 366
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.139 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,791,847
Number of Sequences: 1026957
Number of extensions: 12865957
Number of successful extensions: 33396
Number of sequences better than 1.0e-02: 9
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 33372
Number of HSP's gapped (non-prelim): 18
length of query: 426
length of database: 324,149,939
effective HSP length: 124
effective length of query: 302
effective length of database: 196,807,271
effective search space: 59435795842
effective search space used: 59435795842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 99 (42.7 bits)