BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645298|ref|NP_207468.1| hypothetical protein
[Helicobacter pylori 26695]
(228 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207468.1| (NC_000915) hypothetical protein [Helicoba... 457 e-128
ref|NP_206832.1| (NC_000915) hypothetical protein [Helicoba... 70 1e-11
ref|NP_222748.1| (NC_000921) putative [Helicobacter pylori ... 65 6e-10
ref|NP_207222.1| (NC_000915) hypothetical protein [Helicoba... 45 6e-04
ref|NP_224023.1| (NC_000921) putative [Helicobacter pylori ... 44 0.001
>ref|NP_207468.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||B64604 hypothetical protein HP0674 - Helicobacter pylori (strain 26695)
gb|AAD07740.1| (AE000580) H. pylori predicted coding region HP0674 [Helicobacter
pylori 26695]
Length = 228
Score = 457 bits (1175), Expect = e-128
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MLAYCFITPDDLKNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGN 60
MLAYCFITPDDLKNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGN
Sbjct: 1 MLAYCFITPDDLKNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGN 60
Query: 61 PSQLAIKVPRKSLENDELPNTKKNIFNGLIRTIYGCIDDENSFLLENDKTIKDLNIQDLL 120
PSQLAIKVPRKSLENDELPNTKKNIFNGLIRTIYGCIDDENSFLLENDKTIKDLNIQDLL
Sbjct: 61 PSQLAIKVPRKSLENDELPNTKKNIFNGLIRTIYGCIDDENSFLLENDKTIKDLNIQDLL 120
Query: 121 GPLKTQAFPLSYIITDAINQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLKESSQF 180
GPLKTQAFPLSYIITDAINQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLKESSQF
Sbjct: 121 GPLKTQAFPLSYIITDAINQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLKESSQF 180
Query: 181 IIEVPREALDLENVDRLVEYTLSPNNHSQSSLVYHISEGSYIIHLIDD 228
IIEVPREALDLENVDRLVEYTLSPNNHSQSSLVYHISEGSYIIHLIDD
Sbjct: 181 IIEVPREALDLENVDRLVEYTLSPNNHSQSSLVYHISEGSYIIHLIDD 228
>ref|NP_206832.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64523 hypothetical protein HP0030 - Helicobacter pylori (strain 26695)
gb|AAD07107.1| (AE000525) H. pylori predicted coding region HP0030 [Helicobacter
pylori 26695]
Length = 593
Score = 70.5 bits (171), Expect = 1e-11
Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 14/99 (14%)
Query: 4 YCFITPDDLK----NLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVG 59
YCFI+P DL N+ RL I+ AI Q + V L++A ID I YN L N FIFD+
Sbjct: 489 YCFISPTDLATQLGNISPRLSKSIVTAIEQAEGVRLNYALIDKITYNSLHNILSFIFDID 548
Query: 60 NP------SQLAIKVPRKSLENDELPNTK----KNIFNG 88
NP +L I+VPR++L+N +LP K IF+G
Sbjct: 549 NPLSDQVFERLVIEVPREALKNVKLPQIKNVLTSQIFDG 587
Score = 60.8 bits (146), Expect = 1e-08
Identities = 34/61 (55%), Positives = 40/61 (64%), Gaps = 1/61 (1%)
Query: 130 LSYIITDAINQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLKE-SSQFIIEVPREA 188
LS I AI Q EGV L+YALI+ I YN L N FIFD+ NPL + + +IEVPREA
Sbjct: 508 LSKSIVTAIEQAEGVRLNYALIDKITYNSLHNILSFIFDIDNPLSDQVFERLVIEVPREA 567
Query: 189 L 189
L
Sbjct: 568 L 568
>ref|NP_222748.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71982 hypothetical protein jhp0026 - Helicobacter pylori (strain J99)
gb|AAD05610.1| (AE001442) putative [Helicobacter pylori J99]
Length = 565
Score = 65.1 bits (157), Expect = 6e-10
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 116 IQDLLGPLKTQAFPLSYIITDAINQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLK 175
I DL L + LS I AI Q EG+ L YALI+ + YN L NT +FIFD+ NP+
Sbjct: 459 ISDLATQLGNISPRLSKSIVTAIEQAEGIRLLYALIDKVSYNSLHNTLNFIFDIDNPMSD 518
Query: 176 ES-SQFIIEVPREAL 189
+S ++ ++EVPREAL
Sbjct: 519 QSLNELVVEVPREAL 533
Score = 64.3 bits (155), Expect = 1e-09
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 4 YCFITP--DDLKNLKERLFIDIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGNP 61
YCFI+ L N+ RL I+ AI Q + + L +A ID + YN L N FIFD+ NP
Sbjct: 456 YCFISDLATQLGNISPRLSKSIVTAIEQAEGIRLLYALIDKVSYNSLHNTLNFIFDIDNP 515
Query: 62 ------SQLAIKVPRKSLENDELPNTKKNIFNGLIRTIY 94
++L ++VPR++L+N +LP K + + + Y
Sbjct: 516 MSDQSLNELVVEVPREALKNVKLPQIKNELTSQIFDGAY 554
>ref|NP_207222.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
ref|NP_208202.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64696 hypothetical protein HP0424/HP1411 - Helicobacter pylori (strain
26695)
gb|AAD07493.1| (AE000558) H. pylori predicted coding region HP0424 [Helicobacter
pylori 26695]
gb|AAD08453.1| (AE000641) H. pylori predicted coding region HP1411 [Helicobacter
pylori 26695]
Length = 619
Score = 45.1 bits (105), Expect = 6e-04
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 117 QDLLGPLKTQAFPLSYIITDAINQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLKE 176
+DLL L+ + LS I AI Q E + L YALI++I++N LD+T F F VG+ L +
Sbjct: 468 KDLLKQLEKISASLSKDIVIAIKQVEKLELSYALIDNIQHNTLDDTLDFTFIVGDSLSVQ 527
Query: 177 S 177
S
Sbjct: 528 S 528
Score = 42.0 bits (97), Expect = 0.005
Identities = 24/59 (40%), Positives = 35/59 (58%), Gaps = 4/59 (6%)
Query: 6 FITPDDLKNLKERLFI----DIINAINQKKRVALDHAQIDDIQYNVLDNAFYFIFDVGN 60
FI P DL E++ DI+ AI Q +++ L +A ID+IQ+N LD+ F F VG+
Sbjct: 464 FIPPKDLLKQLEKISASLSKDIVIAIKQVEKLELSYALIDNIQHNTLDDTLDFTFIVGD 522
>ref|NP_224023.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71822 hypothetical protein jhp1305 - Helicobacter pylori (strain J99)
gb|AAD06892.1| (AE001554) putative [Helicobacter pylori J99]
Length = 243
Score = 43.9 bits (102), Expect = 0.001
Identities = 26/61 (42%), Positives = 38/61 (61%)
Query: 117 QDLLGPLKTQAFPLSYIITDAINQKEGVALDYALINDIKYNLLDNTFHFIFDVGNPLLKE 176
+DLL L+ + LS I I Q E + L+YALI++I++N LD+T F F VG+ L +
Sbjct: 97 KDLLKQLEKISASLSKDIVITIKQVEKLELNYALIDNIQHNTLDDTLDFTFIVGDSLSVQ 156
Query: 177 S 177
S
Sbjct: 157 S 157
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.142 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,833,413
Number of Sequences: 1026957
Number of extensions: 5870515
Number of successful extensions: 13710
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13693
Number of HSP's gapped (non-prelim): 10
length of query: 228
length of database: 324,149,939
effective HSP length: 117
effective length of query: 111
effective length of database: 203,995,970
effective search space: 22643552670
effective search space used: 22643552670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)