BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645305|ref|NP_207475.1| hypothetical protein
[Helicobacter pylori 26695]
         (168 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207475.1|  (NC_000915) hypothetical protein [Helicoba...   352  1e-96
ref|NP_223340.1|  (NC_000921) putative [Helicobacter pylori ...   339  8e-93
ref|NP_223927.1|  (NC_000921) putative [Helicobacter pylori ...   232  1e-60
ref|NP_208081.1|  (NC_000915) hypothetical protein [Helicoba...   227  5e-59

>ref|NP_207475.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64605 hypothetical protein HP0681 - Helicobacter pylori (strain 26695)
 gb|AAD14887.1| (AE000581) H. pylori predicted coding region HP0681 [Helicobacter
           pylori 26695]
          Length = 168

 Score =  352 bits (902), Expect = 1e-96
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MDTTKENLNGSKERLSDWEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVW 60
           MDTTKENLNGSKERLSDWEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVW
Sbjct: 1   MDTTKENLNGSKERLSDWEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVW 60

Query: 61  LVALIAALLSNLLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGSRLRDF 120
           LVALIAALLSNLLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGSRLRDF
Sbjct: 61  LVALIAALLSNLLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGSRLRDF 120

Query: 121 YVMLLTMPFIAAIHEVSAYCGHPSNLLVEGLVILGFQGFLKLCAKWGW 168
           YVMLLTMPFIAAIHEVSAYCGHPSNLLVEGLVILGFQGFLKLCAKWGW
Sbjct: 121 YVMLLTMPFIAAIHEVSAYCGHPSNLLVEGLVILGFQGFLKLCAKWGW 168



>ref|NP_223340.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71908 hypothetical protein jhp0622 - Helicobacter pylori (strain J99)
 gb|AAD06202.1| (AE001494) putative [Helicobacter pylori J99]
          Length = 168

 Score =  339 bits (869), Expect = 8e-93
 Identities = 161/168 (95%), Positives = 165/168 (97%)

Query: 1   MDTTKENLNGSKERLSDWEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVW 60
           MDTTKENLNGSKERLSD EYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVW
Sbjct: 1   MDTTKENLNGSKERLSDLEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVW 60

Query: 61  LVALIAALLSNLLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGSRLRDF 120
           LV LIAALLSNLLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLG+RLRDF
Sbjct: 61  LVGLIAALLSNLLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGARLRDF 120

Query: 121 YVMLLTMPFIAAIHEVSAYCGHPSNLLVEGLVILGFQGFLKLCAKWGW 168
           YVMLLT+PFI A+HE+SAYCGHPSNLLVEGLVILGFQGFLKLCAKWGW
Sbjct: 121 YVMLLTIPFIIAMHEISAYCGHPSNLLVEGLVILGFQGFLKLCAKWGW 168



>ref|NP_223927.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71832 hypothetical protein jhp1209 - Helicobacter pylori (strain J99)
 gb|AAD06811.1| (AE001547) putative [Helicobacter pylori J99]
          Length = 161

 Score =  232 bits (591), Expect = 1e-60
 Identities = 118/161 (73%), Positives = 133/161 (82%), Gaps = 7/161 (4%)

Query: 12  KERLSDWEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVWLVALIAALLSN 71
           K+RLSDWEY+WA+ALVY  CISI  RIFYDI+GSASD +FDPK SYY+WLV LIAALLSN
Sbjct: 4   KKRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAALLSN 63

Query: 72  LLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGSRLRDFYVMLLTMPFIA 131
           LLF+P+GR   Y   +    +P+F KAIFKARFFGAFY+AVLGSRLRDFYVMLLTMPFIA
Sbjct: 64  LLFDPRGRDC-YKSFQV--RYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTMPFIA 120

Query: 132 AIHEVSAYCGHPSNLLVEGLVILG----FQGFLKLCAKWGW 168
           AIHE+SAYCGHPSN LVEGLV+LG    F    +LCAK GW
Sbjct: 121 AIHEISAYCGHPSNFLVEGLVMLGLVCVFGICSRLCAKLGW 161



>ref|NP_208081.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64681 hypothetical protein HP1289 - Helicobacter pylori (strain 26695)
 gb|AAD08365.1| (AE000633) H. pylori predicted coding region HP1289 [Helicobacter
           pylori 26695]
          Length = 161

 Score =  227 bits (578), Expect = 5e-59
 Identities = 117/161 (72%), Positives = 131/161 (80%), Gaps = 7/161 (4%)

Query: 12  KERLSDWEYRWAMALVYGGCISITTRIFYDINGSASDPLFDPKYSYYVWLVALIAALLSN 71
           K RLSDWEY+WA+ALVY  CISI  RIFYDI+GSASD +FDPK SYY+WLV LIAALLSN
Sbjct: 4   KNRLSDWEYQWAVALVYTICISINARIFYDIDGSASDSIFDPKNSYYMWLVGLIAALLSN 63

Query: 72  LLFNPKGRSVGYLMIETWQGFPKFFKAIFKARFFGAFYDAVLGSRLRDFYVMLLTMPFIA 131
           LLF+P+GR   Y   +    +P+F KAIFKARFFGAFY+AVLGSRLRDFYVMLLT+PFIA
Sbjct: 64  LLFDPRGRDC-YKSFQV--RYPRFLKAIFKARFFGAFYNAVLGSRLRDFYVMLLTIPFIA 120

Query: 132 AIHEVSAYCGHPSNLLVEGLVILG----FQGFLKLCAKWGW 168
           AIHEVSAY GHPSN L+EGLVILG    F    +LCAK GW
Sbjct: 121 AIHEVSAYYGHPSNFLIEGLVILGLVCVFGICSRLCAKLGW 161



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.328    0.144    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,382,405
Number of Sequences: 1026957
Number of extensions: 4365945
Number of successful extensions: 9912
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9906
Number of HSP's gapped (non-prelim): 4
length of query: 168
length of database: 324,149,939
effective HSP length: 112
effective length of query: 56
effective length of database: 209,130,755
effective search space: 11711322280
effective search space used: 11711322280
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 93 (40.4 bits)