BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645311|ref|NP_207482.1| hypothetical protein
[Helicobacter pylori 26695]
(166 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207482.1| (NC_000915) hypothetical protein [Helicoba... 345 8e-95
ref|NP_223346.1| (NC_000921) putative [Helicobacter pylori ... 337 4e-92
ref|NP_282280.1| (NC_002163) hypothetical protein Cj1132c [... 150 7e-36
emb|CAC01390.1| (AJ131360) WlaX protein [Campylobacter jejuni] 147 3e-35
ref|NP_274429.1| (NC_003112) conserved hypothetical protein... 79 1e-14
ref|NP_284344.1| (NC_003116) hypothetical protein [Neisseri... 79 3e-14
ref|NP_662575.1| (NC_002932) conserved hypothetical protein... 49 2e-05
ref|NP_377384.1| (NC_003106) 876aa long hypothetical DNA-di... 41 0.006
sp|O50607|DPO1_SULOH DNA POLYMERASE I (DNA POLYMERASE B1) >... 41 0.006
>ref|NP_207482.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64605 hypothetical protein HP0688 - Helicobacter pylori (strain 26695)
gb|AAD07750.1| (AE000582) H. pylori predicted coding region HP0688 [Helicobacter
pylori 26695]
Length = 166
Score = 345 bits (886), Expect = 8e-95
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MLCVFDIETIPNISLCKEHFQLEENDALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV 60
MLCVFDIETIPNISLCKEHFQLEENDALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV
Sbjct: 1 MLCVFDIETIPNISLCKEHFQLEENDALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV 60
Query: 61 IGDDYGQFIKVGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTL 120
IGDDYGQFIKVGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTL
Sbjct: 61 IGDDYGQFIKVGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTL 120
Query: 121 KALKYNLTLDAFYNQENKWENYRARYSEQFHLDLMDSLSHYGSVRG 166
KALKYNLTLDAFYNQENKWENYRARYSEQFHLDLMDSLSHYGSVRG
Sbjct: 121 KALKYNLTLDAFYNQENKWENYRARYSEQFHLDLMDSLSHYGSVRG 166
>ref|NP_223346.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71907 hypothetical protein jhp0628 - Helicobacter pylori (strain J99)
gb|AAD06210.1| (AE001495) putative [Helicobacter pylori J99]
Length = 276
Score = 337 bits (863), Expect = 4e-92
Identities = 161/166 (96%), Positives = 165/166 (98%)
Query: 1 MLCVFDIETIPNISLCKEHFQLEENDALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV 60
MLCVFDIETIPNISLCKEHFQL+E+DALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV
Sbjct: 7 MLCVFDIETIPNISLCKEHFQLKEDDALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV 66
Query: 61 IGDDYGQFIKVGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTL 120
IGDDYGQFIKVGNFGQKHENKEDF SEKELLEDFFKYFNEKQPRLISFNGRGFD+PLLTL
Sbjct: 67 IGDDYGQFIKVGNFGQKHENKEDFASEKELLEDFFKYFNEKQPRLISFNGRGFDIPLLTL 126
Query: 121 KALKYNLTLDAFYNQENKWENYRARYSEQFHLDLMDSLSHYGSVRG 166
KALKYNLTLDAFY+QENKWENYRARYSEQFHLDLMDSLSHYGSVRG
Sbjct: 127 KALKYNLTLDAFYSQENKWENYRARYSEQFHLDLMDSLSHYGSVRG 172
>ref|NP_282280.1| (NC_002163) hypothetical protein Cj1132c [Campylobacter jejuni]
pir||G81317 hypothetical protein Cj1132c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73387.1| (AL139077) hypothetical protein Cj1132c [Campylobacter jejuni]
Length = 264
Score = 150 bits (378), Expect = 7e-36
Identities = 77/165 (46%), Positives = 111/165 (66%), Gaps = 16/165 (9%)
Query: 2 LCVFDIETIPNISLCKEHFQLEEND---ALKICEWSFEKQKEKSGSEFLPLYLHEIISIA 58
+CVFD E++P++ L ++ E +D +LK +W QKE+SGSEFLPL H+IISI
Sbjct: 8 ICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQW----QKEQSGSEFLPLPYHKIISIC 63
Query: 59 AVIGDDYGQFIKVGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLL 118
AV+ D++G+FIKV NK D +EKE++E+FF + +P+L+SFNG+ FDMP+L
Sbjct: 64 AVLSDNFGKFIKV--------NKIDGQNEKEMIENFFNFIENYEPKLVSFNGKNFDMPVL 115
Query: 119 TLKALKYNLTLDAFYN-QENKWENYRARYSEQFHLDLMDSLSHYG 162
L+ALKYNL + + Q +KW NY+ R+SE H DL++SL G
Sbjct: 116 VLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG 160
>emb|CAC01390.1| (AJ131360) WlaX protein [Campylobacter jejuni]
Length = 276
Score = 147 bits (372), Expect = 3e-35
Identities = 76/165 (46%), Positives = 110/165 (66%), Gaps = 16/165 (9%)
Query: 2 LCVFDIETIPNISLCKEHFQLEEND---ALKICEWSFEKQKEKSGSEFLPLYLHEIISIA 58
+CVFD E++P++ L ++ E +D +LK +W QKE+SGSEFLPL H+IISI
Sbjct: 20 ICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQW----QKEQSGSEFLPLPYHKIISIC 75
Query: 59 AVIGDDYGQFIKVGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLL 118
AV+ D++G+FIKV NK D +EKE++ +FF + +P+L+SFNG+ FDMP+L
Sbjct: 76 AVLSDNFGKFIKV--------NKIDGQNEKEMIANFFNFIENYEPKLVSFNGKNFDMPVL 127
Query: 119 TLKALKYNLTLDAFYN-QENKWENYRARYSEQFHLDLMDSLSHYG 162
L+ALKYNL + + Q +KW NY+ R+SE H DL++SL G
Sbjct: 128 VLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG 172
>ref|NP_274429.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||C81085 conserved hypothetical protein NMB1417 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41778.1| (AE002491) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 264
Score = 79.3 bits (194), Expect = 1e-14
Identities = 47/171 (27%), Positives = 97/171 (56%), Gaps = 20/171 (11%)
Query: 2 LCVFDIETIPNISLCKEHFQLEEN-DALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV 60
+ FDIET+P++ + ++L + ++ ++ +K++ ++G +F+ +LH++++I+
Sbjct: 4 ILAFDIETVPDVQGIRTLYELPSSLPDDEVVLFAQQKRRAQTGGDFMQHHLHQVVAISCC 63
Query: 61 IGDDYGQF-IKVGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLT 119
+ +GQ + VG G+ + +E ++ FF+ + P+L+S+NG GFD+P+L
Sbjct: 64 MR--WGQDKVHVGTIGEMDDGEE------VVIAKFFELIEKHTPQLVSWNGGGFDLPVLH 115
Query: 120 LKALKYNLTLDAFY---------NQENKWENYRARYSEQFHLDLMDSLSHY 161
++L Y + ++ +++ KW NY +RY Q H DLMD L+ Y
Sbjct: 116 YRSLIYGINAARYWDMGDGDFGDSRDFKWNNYISRY-HQRHCDLMDLLALY 165
>ref|NP_284344.1| (NC_003116) hypothetical protein [Neisseria meningitidis Z2491]
pir||H81856 hypothetical protein NMA1628 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84856.1| (AL162756) hypothetical protein [Neisseria meningitidis Z2491]
Length = 264
Score = 78.6 bits (192), Expect = 3e-14
Identities = 47/171 (27%), Positives = 96/171 (55%), Gaps = 20/171 (11%)
Query: 2 LCVFDIETIPNISLCKEHFQLEEN-DALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV 60
+ FDIET+P++ + + L + ++ ++ +K++ ++G +F+ +LH+I++I+
Sbjct: 4 ILAFDIETVPDVQCIRTLYDLPSSLPDDEVVLFAQQKRRAQTGGDFMQHHLHQIVAISCC 63
Query: 61 IGDDYGQF-IKVGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLT 119
+ +GQ + VG G+ + +E ++ FF+ + P+L+S+NG GFD+P+L
Sbjct: 64 MR--WGQDKVHVGTIGEMDDGEE------VVIAKFFELIEKHTPQLVSWNGGGFDLPVLH 115
Query: 120 LKALKYNLTLDAFY---------NQENKWENYRARYSEQFHLDLMDSLSHY 161
++L + + ++ +++ KW NY +RY Q H DLMD L+ Y
Sbjct: 116 YRSLLHGINAARYWDMGDGDFGDSRDFKWNNYISRY-HQRHCDLMDLLALY 165
>ref|NP_662575.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72917.1| (AE012924) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 274
Score = 48.9 bits (115), Expect = 2e-05
Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 8/165 (4%)
Query: 4 VFDIETIPNISLCKEHFQLEE---NDALKICEWSFEKQKEKSGSEFLPLYLHEIISIAAV 60
VFD+E +P+ + + +++ + +D + W +L + +ISIAA+
Sbjct: 11 VFDVEWVPDPASGRRIYKIPDTASDDEVLDVMWRKGGATPDDPRPYLKTVMCRVISIAAL 70
Query: 61 IGDDYGQFIKVGNFGQKHENKEDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTL 120
+ + + N + +E E++ F + +++ +++ FN D+P+L
Sbjct: 71 VRKRVKDGVTLKLISLPGLNVSE-QAEGEIIRQFLEAVGKQKAQIVGFNSSNADLPILYQ 129
Query: 121 KALKYNLTLDAFYNQENK-WE--NYRARYSEQFHLDLMDSLSHYG 162
+AL ++ F ++ +K WE +Y RYS+ F +DL D + YG
Sbjct: 130 RALANRVSAPTFCHRPDKPWEGVDYFNRYSD-FSIDLKDLVGGYG 173
>ref|NP_377384.1| (NC_003106) 876aa long hypothetical DNA-directed DNA polymerase
[Sulfolobus tokodaii]
dbj|BAB66493.1| (AP000986) 876aa long hypothetical DNA-directed DNA polymerase
[Sulfolobus tokodaii]
Length = 876
Score = 40.8 bits (94), Expect = 0.006
Identities = 26/75 (34%), Positives = 40/75 (52%), Gaps = 8/75 (10%)
Query: 82 EDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWE- 140
E F SE+EL+ FF + P +++FNG FD+P + +ALK N T +E ++
Sbjct: 286 ETFKSERELIRRFFDIILD-YPIILTFNGDDFDIPYIYYRALKLNFT-----PEEIPFDI 339
Query: 141 -NYRARYSEQFHLDL 154
N +Y H+DL
Sbjct: 340 INDEGKYLAGIHIDL 354
>sp|O50607|DPO1_SULOH DNA POLYMERASE I (DNA POLYMERASE B1)
dbj|BAA23994.1| (AB008894) DNA polymerase alpha B1 [Sulfurisphaera ohwakuensis]
Length = 872
Score = 40.8 bits (94), Expect = 0.006
Identities = 26/75 (34%), Positives = 40/75 (52%), Gaps = 8/75 (10%)
Query: 82 EDFTSEKELLEDFFKYFNEKQPRLISFNGRGFDMPLLTLKALKYNLTLDAFYNQENKWE- 140
E F SE+EL+ FF + P +++FNG FD+P + +ALK N T +E ++
Sbjct: 286 ETFKSERELIRRFFDIILD-YPIILTFNGDDFDIPYIYYRALKLNFT-----PEEIPFDI 339
Query: 141 -NYRARYSEQFHLDL 154
N +Y H+DL
Sbjct: 340 INDEGKYLAGIHIDL 354
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,493,303
Number of Sequences: 1026957
Number of extensions: 4956535
Number of successful extensions: 11202
Number of sequences better than 1.0e-02: 9
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11186
Number of HSP's gapped (non-prelim): 9
length of query: 166
length of database: 324,149,939
effective HSP length: 112
effective length of query: 54
effective length of database: 209,130,755
effective search space: 11293060770
effective search space used: 11293060770
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 92 (40.0 bits)