BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645312|ref|NP_207483.1| hypothetical protein
[Helicobacter pylori 26695]
(96 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207483.1| (NC_000915) hypothetical protein [Helicoba... 198 9e-51
ref|NP_223346.1| (NC_000921) putative [Helicobacter pylori ... 192 8e-49
ref|NP_282280.1| (NC_002163) hypothetical protein Cj1132c [... 84 4e-16
emb|CAC01390.1| (AJ131360) WlaX protein [Campylobacter jejuni] 78 2e-14
ref|NP_274429.1| (NC_003112) conserved hypothetical protein... 42 0.001
ref|NP_284344.1| (NC_003116) hypothetical protein [Neisseri... 40 0.007
>ref|NP_207483.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64606 hypothetical protein HP0689 - Helicobacter pylori (strain 26695)
gb|AAD07751.1| (AE000582) H. pylori predicted coding region HP0689 [Helicobacter
pylori 26695]
Length = 96
Score = 198 bits (504), Expect = 9e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDVLNTYWLFLKYEVLKGALNK 60
MMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDVLNTYWLFLKYEVLKGALNK
Sbjct: 1 MMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDVLNTYWLFLKYEVLKGALNK 60
Query: 61 EQYLGLLNDFLAKFPKEKSYSSVFTNALEKEIREFA 96
EQYLGLLNDFLAKFPKEKSYSSVFTNALEKEIREFA
Sbjct: 61 EQYLGLLNDFLAKFPKEKSYSSVFTNALEKEIREFA 96
>ref|NP_223346.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71907 hypothetical protein jhp0628 - Helicobacter pylori (strain J99)
gb|AAD06210.1| (AE001495) putative [Helicobacter pylori J99]
Length = 276
Score = 192 bits (487), Expect = 8e-49
Identities = 92/96 (95%), Positives = 93/96 (96%)
Query: 1 MMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDVLNTYWLFLKYEVLKGALNK 60
M NIPGKFDVSGDLVHAIYYNPHLSQKEKKG+ID YCQSDVLNTYWLFLKYEVLKGALNK
Sbjct: 181 MTNIPGKFDVSGDLVHAIYYNPHLSQKEKKGIIDGYCQSDVLNTYWLFLKYEVLKGALNK 240
Query: 61 EQYLGLLNDFLAKFPKEKSYSSVFTNALEKEIREFA 96
EQYLGLLNDFLAKFPKEKSYSSVF NALEKEIREFA
Sbjct: 241 EQYLGLLNDFLAKFPKEKSYSSVFINALEKEIREFA 276
>ref|NP_282280.1| (NC_002163) hypothetical protein Cj1132c [Campylobacter jejuni]
pir||G81317 hypothetical protein Cj1132c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73387.1| (AL139077) hypothetical protein Cj1132c [Campylobacter jejuni]
Length = 264
Score = 83.6 bits (205), Expect = 4e-16
Identities = 43/95 (45%), Positives = 60/95 (62%), Gaps = 9/95 (9%)
Query: 1 MMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDVLNTYWLFLKYEVLKGALNK 60
M+ +PGK+DV GD V ++Y L + I YC+SDVLNTY LFLKYE++K +++
Sbjct: 171 MVGLPGKYDVHGDEVMKLFYENKLEK------IHEYCESDVLNTYMLFLKYELIKANVDE 224
Query: 61 EQYLGLLN---DFLAKFPKEKSYSSVFTNALEKEI 92
E Y+G L+ DFL ++SY+ VF A E EI
Sbjct: 225 EDYVGFLSYMRDFLCAKKSDRSYTEVFAKACESEI 259
>emb|CAC01390.1| (AJ131360) WlaX protein [Campylobacter jejuni]
Length = 276
Score = 77.8 bits (190), Expect = 2e-14
Identities = 41/95 (43%), Positives = 58/95 (60%), Gaps = 9/95 (9%)
Query: 1 MMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDVLNTYWLFLKYEVLKGALNK 60
M+ +PGK+DV GD V ++ L + I YC+SDVLNTY LFLKYE++K +++
Sbjct: 183 MVGLPGKYDVHGDEVMKLFCENELEK------IHEYCESDVLNTYMLFLKYELIKANVSE 236
Query: 61 EQYLGLLN---DFLAKFPKEKSYSSVFTNALEKEI 92
E Y+ L+ DFL ++SY+ VF A E EI
Sbjct: 237 EDYIDFLSYMRDFLRAKKSDRSYTEVFAKACESEI 271
>ref|NP_274429.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||C81085 conserved hypothetical protein NMB1417 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41778.1| (AE002491) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 264
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 1 MMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDVLNTYWLFLKYEVLKGALNK 60
+ PGK + G V ++ L + I +YC++D NTY ++L++ ++ G L+
Sbjct: 179 LCGFPGKLGMDGSKVWEAFHTGRLKE------IRNYCETDAANTYLMYLRFCLVSGRLDA 232
Query: 61 EQY---LGLLNDFLAKFPKEKSYSSVFTNALE 89
++Y + + ++L+ EK + F A E
Sbjct: 233 DEYEMEIKRMRNYLSAQAGEKPHWEEFVRAWE 264
>ref|NP_284344.1| (NC_003116) hypothetical protein [Neisseria meningitidis Z2491]
pir||H81856 hypothetical protein NMA1628 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84856.1| (AL162756) hypothetical protein [Neisseria meningitidis Z2491]
Length = 264
Score = 39.7 bits (91), Expect = 0.007
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 1 MMNIPGKFDVSGDLVHAIYYNPHLSQKEKKGVIDSYCQSDVLNTYWLFLKYEVLKGALNK 60
+ PGK + G V ++ L + I +YC++D +NTY ++L++ ++ G +
Sbjct: 179 LCGFPGKLGMDGSKVWEAFHAGRLKE------IRNYCETDAVNTYLMYLRFCLVSGRFDA 232
Query: 61 EQY---LGLLNDFLAKFPKEKSYSSVFTNA 87
++Y + + ++L+ ++K + + F A
Sbjct: 233 DEYEMEIKRIRNYLSAQTEDKPHWAEFVQA 262
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.138 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,596,861
Number of Sequences: 1026957
Number of extensions: 2377976
Number of successful extensions: 5246
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5238
Number of HSP's gapped (non-prelim): 6
length of query: 96
length of database: 324,149,939
effective HSP length: 72
effective length of query: 24
effective length of database: 250,209,035
effective search space: 6005016840
effective search space used: 6005016840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)