BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645317|ref|NP_207488.1| hypothetical protein
[Helicobacter pylori 26695]
(257 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207488.1| (NC_000915) hypothetical protein [Helicoba... 539 e-152
ref|NP_223352.1| (NC_000921) putative Outer membrane protei... 520 e-147
ref|NP_231501.1| (NC_002505) conserved hypothetical protein... 66 4e-10
ref|NP_638801.1| (NC_003902) conserved hypothetical protein... 62 5e-09
ref|NP_641018.1| (NC_003919) conserved hypothetical protein... 61 1e-08
>ref|NP_207488.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64606 hypothetical protein HP0694 - Helicobacter pylori (strain 26695)
gb|AAD07748.1| (AE000582) H. pylori predicted coding region HP0694 [Helicobacter
pylori 26695]
Length = 257
Score = 539 bits (1389), Expect = e-152
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MFFKFILCLLLGVFAWAKEDIPTPLTPSKRYSINLMTENDGYINPYIDEYYTAGNQIGFS 60
MFFKFILCLLLGVFAWAKEDIPTPLTPSKRYSINLMTENDGYINPYIDEYYTAGNQIGFS
Sbjct: 1 MFFKFILCLLLGVFAWAKEDIPTPLTPSKRYSINLMTENDGYINPYIDEYYTAGNQIGFS 60
Query: 61 TKEFDFSKNKAMKWTSYLGFFNKSPRVTRFGISLAQDMYTPSLKNRKLVHLHDNHPYGGY 120
TKEFDFSKNKAMKWTSYLGFFNKSPRVTRFGISLAQDMYTPSLKNRKLVHLHDNHPYGGY
Sbjct: 61 TKEFDFSKNKAMKWTSYLGFFNKSPRVTRFGISLAQDMYTPSLKNRKLVHLHDNHPYGGY 120
Query: 121 LRVNLNVYNRHKTFMELFTLSLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNEFIF 180
LRVNLNVYNRHKTFMELFTLSLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNEFIF
Sbjct: 121 LRVNLNVYNRHKTFMELFTLSLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNEFIF 180
Query: 181 ELHYQLLKKVPLLKTRFFSMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNKVNT 240
ELHYQLLKKVPLLKTRFFSMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNKVNT
Sbjct: 181 ELHYQLLKKVPLLKTRFFSMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNKVNT 240
Query: 241 AFDGGMPYSDKFSIYFL 257
AFDGGMPYSDKFSIYFL
Sbjct: 241 AFDGGMPYSDKFSIYFL 257
>ref|NP_223352.1| (NC_000921) putative Outer membrane protein [Helicobacter pylori
J99]
pir||H71907 probable outer membrane protein - Helicobacter pylori (strain J99)
gb|AAD06215.1| (AE001495) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 336
Score = 520 bits (1339), Expect = e-147
Identities = 249/259 (96%), Positives = 253/259 (97%), Gaps = 3/259 (1%)
Query: 1 MFFKFILCLLLGVFAWAKEDIPTP---LTPSKRYSINLMTENDGYINPYIDEYYTAGNQI 57
MFFKFILCL LG+FAWAKE IPTP LTPSKRYSINLMTENDGYINPYIDEYYTAGNQI
Sbjct: 1 MFFKFILCLSLGIFAWAKEVIPTPSTPLTPSKRYSINLMTENDGYINPYIDEYYTAGNQI 60
Query: 58 GFSTKEFDFSKNKAMKWTSYLGFFNKSPRVTRFGISLAQDMYTPSLKNRKLVHLHDNHPY 117
GFSTKEFDFSKNKAMKW+SYLGFFNKSPRVTRFGISLAQDMYTPSL NRKLVHLHDNHPY
Sbjct: 61 GFSTKEFDFSKNKAMKWSSYLGFFNKSPRVTRFGISLAQDMYTPSLANRKLVHLHDNHPY 120
Query: 118 GGYLRVNLNVYNRHKTFMELFTLSLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNE 177
GGYLRVNLNVYNRH+TFMELFT+SLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNE
Sbjct: 121 GGYLRVNLNVYNRHQTFMELFTISLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNE 180
Query: 178 FIFELHYQLLKKVPLLKTRFFSMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNK 237
FIFELHYQLLKKVPLLKTRFFSMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNK
Sbjct: 181 FIFELHYQLLKKVPLLKTRFFSMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNK 240
Query: 238 VNTAFDGGMPYSDKFSIYF 256
VNTAFDGGMPYSDKFSIYF
Sbjct: 241 VNTAFDGGMPYSDKFSIYF 259
>ref|NP_231501.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||G82147 conserved hypothetical protein VC1867 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95015.1| (AE004262) conserved hypothetical protein [Vibrio cholerae]
Length = 342
Score = 65.9 bits (159), Expect = 4e-10
Identities = 53/225 (23%), Positives = 104/225 (45%), Gaps = 18/225 (8%)
Query: 21 IPTPLTPSKRYSINLMTENDGYINPYIDEYYTAGNQIGFSTKEFD-FSKNKAMKWTSYLG 79
I T ++ + +L +NDG +D+ YT G + +++ + K + + +
Sbjct: 26 ISTYAAAAQTSTFSLSIDNDGVFG--VDQNYTNGLFLSYTSGAITPYWLAKPLSLSIW-- 81
Query: 80 FFNKSPRVTRFGISLAQDMYTPSLKNRKLVHLHDNH-PYGGYLRVNLNVYNRHKTFMELF 138
+P + ++ +L M+TPS + +L N PY GYL N + H + F
Sbjct: 82 ---GAPSLDKWEFTLGHKMWTPS--DIELTKPQPNERPYAGYLHTEFNYLSLHPQQAQRF 136
Query: 139 TLSLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNEFI----FELHYQLLKKVPLLK 194
L+LG TG+ +L+ + Q+L+H + GW Q++++ + + H+ + L
Sbjct: 137 NLTLGMTGESALSEEAQKLVHSITKSDEPNGWAYQVEDQLVGSLGYRSHFNWGRYHALAG 196
Query: 195 TRFFSMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNKVN 239
T +EL V +GN R G + R G +L+ ++G +++
Sbjct: 197 T---ELELANISEVNIGNFRSDLSSGLMLRWGTDLENNFGAAQIS 238
>ref|NP_638801.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42725.1| (AE012464) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 353
Score = 62.4 bits (150), Expect = 5e-09
Identities = 55/230 (23%), Positives = 99/230 (42%), Gaps = 19/230 (8%)
Query: 32 SINLMTENDGYINPYIDEYYTAGNQIGF-STKEFDFSKNKAM----KWT-SYL-----GF 80
++N +ND + D+ Y+ G + S D++ + + +W SYL G
Sbjct: 39 AVNFRVDNDLFGGEDQDQGYSNGALLTLVSPNLVDYTDDPCLPRTARWVNSYLERLHPGE 98
Query: 81 FNKSPRVTRFGISLAQDMYTPSLKNRKLVHLHDNHPYGGYLRVNLNVYNRHKTFMELFTL 140
F++ V S+ Q ++TP+ R+ V + D+ PY G L + R+ + L
Sbjct: 99 FDQQNMV----FSIGQAIFTPTDYTRRDV-IPDDRPYAGILLASFGYNARNDAHLRTTQL 153
Query: 141 SLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNEFIFELHYQLLKKVP---LLKTRF 197
+G G + A + Q IH D +F GW+ QL NE + L ++ +++ P +
Sbjct: 154 QIGVVGPWAFAQEAQDAIHDALGDEKFQGWDNQLHNEPLVNLVHERMRRWPGDATVNADG 213
Query: 198 FSMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNKVNTAFDGGMP 247
+ + + + LGN + G R G+ L D+G A + P
Sbjct: 214 WGWDAISHWGGSLGNMSTHLNAGGEVRFGWKLPDDFGSTPTRPAGENTAP 263
>ref|NP_641018.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM35554.1| (AE011695) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 353
Score = 60.8 bits (146), Expect = 1e-08
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 19/230 (8%)
Query: 32 SINLMTENDGYINPYIDEYYTAGNQIGF-STKEFDFSKNKAM----KWT-SYL-----GF 80
++N +ND + D+ Y+ G + S D++ + + +W SYL G
Sbjct: 39 AVNFRVDNDLFGGEDQDQGYSNGAVLTLVSPNLVDYTDDPCLPRTARWVNSYLERLHPGE 98
Query: 81 FNKSPRVTRFGISLAQDMYTPSLKNRKLVHLHDNHPYGGYLRVNLNVYNRHKTFMELFTL 140
F++ V S+ Q ++TP+ R+ V + D+ PY G L + R+ + L
Sbjct: 99 FDQQNMV----FSIGQAIFTPTDYTRRDV-IPDDRPYAGILLASFGYNARNDAHLRTTQL 153
Query: 141 SLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNEFIFELHYQLLKKVPL---LKTRF 197
+G G +LA + Q IH D +F GW+ QL NE + L ++ + + P
Sbjct: 154 QVGIVGPWALAKEAQDAIHDALGDEKFQGWDNQLHNEPLINLVHERMHRWPADASGNAGG 213
Query: 198 FSMELMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNKVNTAFDGGMP 247
F + + + +GN + G R G+ L D+G A + P
Sbjct: 214 FGWDFISHWGGAVGNMATHLNAGGEARFGWKLPDDFGSTPTRPAGENTAP 263
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.141 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,102,233
Number of Sequences: 1026957
Number of extensions: 7720945
Number of successful extensions: 19562
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19553
Number of HSP's gapped (non-prelim): 5
length of query: 257
length of database: 324,149,939
effective HSP length: 119
effective length of query: 138
effective length of database: 201,942,056
effective search space: 27868003728
effective search space used: 27868003728
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 96 (41.6 bits)