BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645320|ref|NP_207491.1| hypothetical protein
[Helicobacter pylori 26695]
         (168 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207491.1|  (NC_000915) hypothetical protein [Helicoba...   364  e-100
ref|NP_223349.1|  (NC_000921) putative [Helicobacter pylori ...   352  7e-97
gb|AAL17712.1|  (AY055852) acetone carboxylase gamma subunit...   224  4e-58
ref|NP_436934.1|  (NC_003078) CONSERVED HYPOTHETICAL PROTEIN...   166  7e-41
ref|NP_105942.1|  (NC_002678) hypothetical protein [Mesorhiz...   165  2e-40

>ref|NP_207491.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64607 hypothetical protein HP0697 - Helicobacter pylori (strain 26695)
 gb|AAD07749.1| (AE000582) H. pylori predicted coding region HP0697 [Helicobacter
           pylori 26695]
          Length = 168

 Score =  364 bits (934), Expect = e-100
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MVMSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGP 60
           MVMSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGP
Sbjct: 1   MVMSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGP 60

Query: 61  HLFVVQDAQKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTHWQV 120
           HLFVVQDAQKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTHWQV
Sbjct: 61  HLFVVQDAQKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTHWQV 120

Query: 121 YREYICPDCGILLDVEAPTPWYPVIHDFEPDIEVFYKDWLGIQPPERR 168
           YREYICPDCGILLDVEAPTPWYPVIHDFEPDIEVFYKDWLGIQPPERR
Sbjct: 121 YREYICPDCGILLDVEAPTPWYPVIHDFEPDIEVFYKDWLGIQPPERR 168



>ref|NP_223349.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71907 hypothetical protein jhp0631 - Helicobacter pylori (strain J99)
 gb|AAD06209.1| (AE001495) putative [Helicobacter pylori J99]
          Length = 166

 Score =  352 bits (904), Expect = 7e-97
 Identities = 162/165 (98%), Positives = 163/165 (98%)

Query: 3   MSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGPHL 62
           MSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGPHL
Sbjct: 1   MSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGPHL 60

Query: 63  FVVQDAQKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTHWQVYR 122
           FVVQD QKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDT+WQVYR
Sbjct: 61  FVVQDPQKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTNWQVYR 120

Query: 123 EYICPDCGILLDVEAPTPWYPVIHDFEPDIEVFYKDWLGIQPPER 167
           EYICPDCGILLDVEAPTPWYPVIHDFEPDIE FYKDWLGIQPPER
Sbjct: 121 EYICPDCGILLDVEAPTPWYPVIHDFEPDIETFYKDWLGIQPPER 165



>gb|AAL17712.1| (AY055852) acetone carboxylase gamma subunit [Xanthobacter sp. Py2]
          Length = 168

 Score =  224 bits (570), Expect = 4e-58
 Identities = 97/163 (59%), Positives = 128/163 (78%), Gaps = 1/163 (0%)

Query: 6   YTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGPHLFVV 65
           YT+ +I +LV+G +D +T+ +MLS PKD ERF  Y+++LQ+++ +DDKI+LPLGP LF+V
Sbjct: 3   YTRSKIVDLVDGKIDPDTLHQMLSTPKDPERFVTYVEILQERMPWDDKIILPLGPKLFIV 62

Query: 66  QD-AQKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTHWQVYREY 124
           Q    KKW ++C CGH FC  ++NWKL A ++VRDT +KMEE+YP+L+A    WQV REY
Sbjct: 63  QQKVSKKWTVRCECGHDFCDWKDNWKLSARVHVRDTPQKMEEIYPRLMAPTPSWQVIREY 122

Query: 125 ICPDCGILLDVEAPTPWYPVIHDFEPDIEVFYKDWLGIQPPER 167
            CP+CG L DVEAPTPWYPVIHDF PDIE FY++WLG+  PER
Sbjct: 123 FCPECGTLHDVEAPTPWYPVIHDFSPDIEGFYQEWLGLPVPER 165



>ref|NP_436934.1| (NC_003078) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
 emb|CAC48794.1| (AL603643) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
          Length = 165

 Score =  166 bits (421), Expect = 7e-41
 Identities = 76/159 (47%), Positives = 105/159 (65%), Gaps = 1/159 (0%)

Query: 3   MSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGPHL 62
           M++Y++E I +LV G L W    +++S  KDH+RF  YL VLQD+V + D I+LP+G  L
Sbjct: 1   MTEYSKEVINDLVNGTLPWPQTRRIMSAYKDHDRFFKYLAVLQDRVAWSDPILLPVGDRL 60

Query: 63  FVVQDAQKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTHWQVYR 122
           F+   A+ + V +C CG++F     NWKL+A I VRDT E + E+YP     D  W   R
Sbjct: 61  FICDSAEGR-VARCECGYSFGDYRRNWKLNAVINVRDTEESLREIYPNSDIPDPRWMEIR 119

Query: 123 EYICPDCGILLDVEAPTPWYPVIHDFEPDIEVFYKDWLG 161
           E+ CP+C  L +VEA  P YP++HDFEPD+E FY+DWLG
Sbjct: 120 EFFCPECAHLHEVEAAAPGYPIVHDFEPDLEGFYRDWLG 158



>ref|NP_105942.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
 dbj|BAB51728.1| (AP003006) hypothetical protein [Mesorhizobium loti]
          Length = 161

 Score =  165 bits (418), Expect = 2e-40
 Identities = 73/159 (45%), Positives = 106/159 (65%), Gaps = 1/159 (0%)

Query: 3   MSKYTQEQIKNLVEGNLDWNTVLKMLSMPKDHERFQMYLKVLQDKVDFDDKIVLPLGPHL 62
           M+ Y++E I +LV G L W    +++S  KD +RF  Y+ VLQD+V + D I+LP+  HL
Sbjct: 1   MTSYSKEVIADLVAGTLPWPQTRRVMSAYKDDDRFFKYVAVLQDRVSWKDPILLPVSDHL 60

Query: 63  FVVQDAQKKWVIKCSCGHAFCAPEENWKLHANIYVRDTAEKMEEVYPKLLASDTHWQVYR 122
           F+ Q   ++ V +C CGH+F    +NWKL A+I VR+T E + E+YP     D  W   R
Sbjct: 61  FICQSGDER-VTRCECGHSFGDYRKNWKLKASIIVRNTEETLREIYPSSDIPDPQWMEIR 119

Query: 123 EYICPDCGILLDVEAPTPWYPVIHDFEPDIEVFYKDWLG 161
           E+ICP+CG + +VEA  P YP++HDF+PD+E FY++WLG
Sbjct: 120 EFICPECGTMHEVEAAAPGYPIVHDFQPDLEGFYREWLG 158



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.322    0.140    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,628,473
Number of Sequences: 1026957
Number of extensions: 5098523
Number of successful extensions: 10605
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10597
Number of HSP's gapped (non-prelim): 5
length of query: 168
length of database: 324,149,939
effective HSP length: 112
effective length of query: 56
effective length of database: 209,130,755
effective search space: 11711322280
effective search space used: 11711322280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 93 (40.4 bits)