BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645322|ref|NP_207493.1| hypothetical protein
[Helicobacter pylori 26695]
         (342 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207493.1|  (NC_000915) hypothetical protein [Helicoba...   668  0.0
ref|NP_223357.1|  (NC_000921) putative [Helicobacter pylori ...   613  e-175

>ref|NP_207493.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||C64607 hypothetical protein HP0699 - Helicobacter pylori (strain 26695)
 gb|AAD07757.1| (AE000583) H. pylori predicted coding region HP0699 [Helicobacter
           pylori 26695]
          Length = 342

 Score =  668 bits (1723), Expect = 0.0
 Identities = 342/342 (100%), Positives = 342/342 (100%)

Query: 1   MTKKFMSWMVVIGALICMLLGVFIFFTSMSVKKFLSAYLNAYLDQRPHIKGMGIAGTPFE 60
           MTKKFMSWMVVIGALICMLLGVFIFFTSMSVKKFLSAYLNAYLDQRPHIKGMGIAGTPFE
Sbjct: 1   MTKKFMSWMVVIGALICMLLGVFIFFTSMSVKKFLSAYLNAYLDQRPHIKGMGIAGTPFE 60

Query: 61  CEGFFKIACVSKELSFLDSQNSPIVNFKNLSIKLRSLDKSSLTLSVHSQIKSPILEQDMQ 120
           CEGFFKIACVSKELSFLDSQNSPIVNFKNLSIKLRSLDKSSLTLSVHSQIKSPILEQDMQ
Sbjct: 61  CEGFFKIACVSKELSFLDSQNSPIVNFKNLSIKLRSLDKSSLTLSVHSQIKSPILEQDMQ 120

Query: 121 QKISQIPLKDLNALLEKMKPTRLNCSLTFNALDEKTLNDNLKCDLTNAENILAYTFFQEG 180
           QKISQIPLKDLNALLEKMKPTRLNCSLTFNALDEKTLNDNLKCDLTNAENILAYTFFQEG
Sbjct: 121 QKISQIPLKDLNALLEKMKPTRLNCSLTFNALDEKTLNDNLKCDLTNAENILAYTFFQEG 180

Query: 181 LMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNLLEAFYHQNK 240
           LMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNLLEAFYHQNK
Sbjct: 181 LMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNLLEAFYHQNK 240

Query: 241 ESLGFFSPYFSLRSQTPSVSYESALASLENYFMALFQSHFKDDTALQQNFKGLLQAFVSM 300
           ESLGFFSPYFSLRSQTPSVSYESALASLENYFMALFQSHFKDDTALQQNFKGLLQAFVSM
Sbjct: 241 ESLGFFSPYFSLRSQTPSVSYESALASLENYFMALFQSHFKDDTALQQNFKGLLQAFVSM 300

Query: 301 AKDKRSQIALNAQAKDNAKLTFNALLESLSVNFFQSYKISHE 342
           AKDKRSQIALNAQAKDNAKLTFNALLESLSVNFFQSYKISHE
Sbjct: 301 AKDKRSQIALNAQAKDNAKLTFNALLESLSVNFFQSYKISHE 342



>ref|NP_223357.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||C71906 hypothetical protein jhp0639 - Helicobacter pylori (strain J99)
 gb|AAD06217.1| (AE001496) putative [Helicobacter pylori J99]
          Length = 342

 Score =  613 bits (1581), Expect = e-175
 Identities = 312/342 (91%), Positives = 326/342 (95%)

Query: 1   MTKKFMSWMVVIGALICMLLGVFIFFTSMSVKKFLSAYLNAYLDQRPHIKGMGIAGTPFE 60
           MTKKFMSWMVVIGALIC+LLGVFIFFTSMSVKK L+AYLNAYL+QRP+I+GMGI G PF+
Sbjct: 1   MTKKFMSWMVVIGALICVLLGVFIFFTSMSVKKSLTAYLNAYLEQRPNIEGMGIIGVPFK 60

Query: 61  CEGFFKIACVSKELSFLDSQNSPIVNFKNLSIKLRSLDKSSLTLSVHSQIKSPILEQDMQ 120
           CEGFFKIACVSKEL FLD QNSPI++FKNL IKL SLDKSSLTLS+HSQI+SPILEQ +Q
Sbjct: 61  CEGFFKIACVSKELRFLDPQNSPIMDFKNLKIKLHSLDKSSLTLSIHSQIQSPILEQSIQ 120

Query: 121 QKISQIPLKDLNALLEKMKPTRLNCSLTFNALDEKTLNDNLKCDLTNAENILAYTFFQEG 180
           QKISQIPLK+LNALLEK KPTRLNCSLTFNALDEKTLNDNLKCDLTNAENILAYTFFQEG
Sbjct: 121 QKISQIPLKNLNALLEKFKPTRLNCSLTFNALDEKTLNDNLKCDLTNAENILAYTFFQEG 180

Query: 181 LMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFSAPKLGVSIQAHHLKNLLEAFYHQNK 240
           LMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRF APKL VSIQA H KN+LE+FY QNK
Sbjct: 181 LMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRFLAPKLSVSIQARHFKNVLESFYQQNK 240

Query: 241 ESLGFFSPYFSLRSQTPSVSYESALASLENYFMALFQSHFKDDTALQQNFKGLLQAFVSM 300
           ESLGFFSPYFSLRSQTPSVSYESALASLENYFMALFQSHFKDDTALQQNFKGLLQAFVSM
Sbjct: 241 ESLGFFSPYFSLRSQTPSVSYESALASLENYFMALFQSHFKDDTALQQNFKGLLQAFVSM 300

Query: 301 AKDKRSQIALNAQAKDNAKLTFNALLESLSVNFFQSYKISHE 342
           AKDKRSQI LNAQAKDN KLTFNALLESLSVNFFQSYKISHE
Sbjct: 301 AKDKRSQIVLNAQAKDNTKLTFNALLESLSVNFFQSYKISHE 342



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,625,112
Number of Sequences: 1026957
Number of extensions: 7205017
Number of successful extensions: 21640
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21638
Number of HSP's gapped (non-prelim): 2
length of query: 342
length of database: 324,149,939
effective HSP length: 122
effective length of query: 220
effective length of database: 198,861,185
effective search space: 43749460700
effective search space used: 43749460700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 98 (42.4 bits)