BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645325|ref|NP_207496.1| hypothetical protein
[Helicobacter pylori 26695]
         (158 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207496.1|  (NC_000915) hypothetical protein [Helicoba...   310  5e-84
ref|NP_223360.1|  (NC_000921) putative [Helicobacter pylori ...   285  2e-76

>ref|NP_207496.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64607 hypothetical protein HP0702 - Helicobacter pylori (strain 26695)
 gb|AAD07758.1| (AE000583) H. pylori predicted coding region HP0702 [Helicobacter
           pylori 26695]
          Length = 158

 Score =  310 bits (793), Expect = 5e-84
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MMRFFSFFYFLFYFLGVSLQALSPLEDQEFLISYRLKIVDSRVMGEEYSVSKPIVSRIKT 60
           MMRFFSFFYFLFYFLGVSLQALSPLEDQEFLISYRLKIVDSRVMGEEYSVSKPIVSRIKT
Sbjct: 1   MMRFFSFFYFLFYFLGVSLQALSPLEDQEFLISYRLKIVDSRVMGEEYSVSKPIVSRIKT 60

Query: 61  APYVLDYHCSIITRNLPNLKNPLLPIKLERFLLEIALKKEKERVIDCILKSQVAITHYDH 120
           APYVLDYHCSIITRNLPNLKNPLLPIKLERFLLEIALKKEKERVIDCILKSQVAITHYDH
Sbjct: 61  APYVLDYHCSIITRNLPNLKNPLLPIKLERFLLEIALKKEKERVIDCILKSQVAITHYDH 120

Query: 121 SYKNGTTTTSILALKALSVRASLVGDALFLDIFRKEEE 158
           SYKNGTTTTSILALKALSVRASLVGDALFLDIFRKEEE
Sbjct: 121 SYKNGTTTTSILALKALSVRASLVGDALFLDIFRKEEE 158



>ref|NP_223360.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71906 hypothetical protein jhp0642 - Helicobacter pylori (strain J99)
 gb|AAD06220.1| (AE001496) putative [Helicobacter pylori J99]
          Length = 157

 Score =  285 bits (728), Expect = 2e-76
 Identities = 146/157 (92%), Positives = 150/157 (94%)

Query: 2   MRFFSFFYFLFYFLGVSLQALSPLEDQEFLISYRLKIVDSRVMGEEYSVSKPIVSRIKTA 61
           MRFFSF YFLFYFLGVSL ALSPLE+QEFLISYRLKIVDSRVMGEEYSVSKPIVSRIKTA
Sbjct: 1   MRFFSFCYFLFYFLGVSLHALSPLEEQEFLISYRLKIVDSRVMGEEYSVSKPIVSRIKTA 60

Query: 62  PYVLDYHCSIITRNLPNLKNPLLPIKLERFLLEIALKKEKERVIDCILKSQVAITHYDHS 121
           PYVLDYHCSIITRNLP+LKNPLL IKLERFLLEIALKKEKERVIDC+LKSQVAITHYDHS
Sbjct: 61  PYVLDYHCSIITRNLPDLKNPLLQIKLERFLLEIALKKEKERVIDCLLKSQVAITHYDHS 120

Query: 122 YKNGTTTTSILALKALSVRASLVGDALFLDIFRKEEE 158
           YKNGTTTTSIL LKALSV+ASL GD L LDIFRKEEE
Sbjct: 121 YKNGTTTTSILNLKALSVKASLEGDMLSLDIFRKEEE 157



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.326    0.141    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,211,274
Number of Sequences: 1026957
Number of extensions: 3399292
Number of successful extensions: 10606
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10604
Number of HSP's gapped (non-prelim): 2
length of query: 158
length of database: 324,149,939
effective HSP length: 111
effective length of query: 47
effective length of database: 210,157,712
effective search space: 9877412464
effective search space used: 9877412464
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 92 (40.0 bits)