BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645331|ref|NP_207502.1| hypothetical protein
[Helicobacter pylori 26695]
(114 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207502.1| (NC_000915) hypothetical protein [Helicoba... 224 1e-58
ref|NP_223365.1| (NC_000921) putative [Helicobacter pylori ... 211 1e-54
ref|NP_281864.1| (NC_002163) putative membrane protein [Cam... 53 6e-07
>ref|NP_207502.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64608 hypothetical protein HP0708 - Helicobacter pylori (strain 26695)
gb|AAD07768.1| (AE000584) H. pylori predicted coding region HP0708 [Helicobacter
pylori 26695]
Length = 114
Score = 224 bits (571), Expect = 1e-58
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MNIKTHSSNEKERFVRIEEDEKKGLFAGTANENSHGLSLMALIGVLVFGGAFLALLAPKI 60
MNIKTHSSNEKERFVRIEEDEKKGLFAGTANENSHGLSLMALIGVLVFGGAFLALLAPKI
Sbjct: 1 MNIKTHSSNEKERFVRIEEDEKKGLFAGTANENSHGLSLMALIGVLVFGGAFLALLAPKI 60
Query: 61 YLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIAF 114
YLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIAF
Sbjct: 61 YLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIAF 114
>ref|NP_223365.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71905 hypothetical protein jhp0647 - Helicobacter pylori (strain J99)
gb|AAD06234.1| (AE001497) putative [Helicobacter pylori J99]
Length = 114
Score = 211 bits (537), Expect = 1e-54
Identities = 108/114 (94%), Positives = 108/114 (94%)
Query: 1 MNIKTHSSNEKERFVRIEEDEKKGLFAGTANENSHGLSLMALIGVLVFGGAFLALLAPKI 60
MNIKTHSSNEKERFVRIEEDEKK LFA NEN HGLSLMALIGVLVFGGAFLALL PKI
Sbjct: 1 MNIKTHSSNEKERFVRIEEDEKKELFAEATNENPHGLSLMALIGVLVFGGAFLALLVPKI 60
Query: 61 YLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIAF 114
YLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIAF
Sbjct: 61 YLSNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYIENSENIGDIAF 114
>ref|NP_281864.1| (NC_002163) putative membrane protein [Campylobacter jejuni]
pir||G81339 probable membrane protein Cj0692c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72966.1| (AL139076) putative membrane protein [Campylobacter jejuni]
Length = 312
Score = 53.1 bits (126), Expect = 6e-07
Identities = 35/101 (34%), Positives = 54/101 (52%), Gaps = 5/101 (4%)
Query: 8 SNEKERFVRIEEDEKKG---LFAGTAN--ENSHGLSLMALIGVLVFGGAFLALLAPKIYL 62
SN+ + + +ED +K L G +N + L+ L+ + L L AP+IY+
Sbjct: 207 SNQAQEKQQNDEDAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYI 266
Query: 63 SNNIYYISRKINTLEDQKRLLLEEQQILKNELEKERFKYYI 103
N IYY+SR+I TL ++ +L EE + LK LE RF+ I
Sbjct: 267 RNQIYYLSREIATLRTEESVLNEENKDLKRRLENMRFQNQI 307
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.316 0.137 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,155,634
Number of Sequences: 1026957
Number of extensions: 2463278
Number of successful extensions: 10932
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10929
Number of HSP's gapped (non-prelim): 3
length of query: 114
length of database: 324,149,939
effective HSP length: 90
effective length of query: 24
effective length of database: 231,723,809
effective search space: 5561371416
effective search space used: 5561371416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)