BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645332|ref|NP_207503.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(300 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207503.1| (NC_000915) conserved hypothetical protein... 601 e-171
ref|NP_223366.1| (NC_000921) putative [Helicobacter pylori ... 573 e-162
ref|NP_290443.1| (NC_002655) orf; conserved hypothetical pr... 540 e-153
ref|NP_358022.1| (NC_003098) Conserved hypothetical protein... 291 6e-78
ref|NP_345000.1| (NC_003028) conserved hypothetical protein... 291 6e-78
ref|NP_373210.1| (NC_002758) conserved hypothetical protein... 280 1e-74
gb|AAL04082.1|AF397166_7 (AF397166) unknown [Streptococcus ... 278 4e-74
ref|NP_472061.1| (NC_003212) conserved hypothetical protein... 262 4e-69
ref|NP_466110.1| (NC_003210) conserved hypothetical protein... 251 7e-66
ref|NP_228469.1| (NC_000853) conserved hypothetical protein... 155 5e-37
ref|NP_560873.1| (NC_003364) conserved hypothetical protein... 150 1e-35
ref|NP_142440.1| (NC_000961) hypothetical protein [Pyrococc... 134 2e-30
ref|NP_214509.1| (NC_000918) hypothetical protein [Aquifex ... 132 4e-30
ref|NP_248661.1| (NC_000909) conserved hypothetical protein... 126 3e-28
ref|NP_633041.1| (NC_003901) conserved protein [Methanosarc... 124 1e-27
ref|NP_148551.1| (NC_000854) hypothetical protein [Aeropyru... 123 3e-27
ref|NP_069297.1| (NC_000917) conserved hypothetical protein... 122 5e-27
ref|NP_619182.1| (NC_003552) conserved hypothetical protein... 122 6e-27
ref|NP_485370.1| (NC_003272) hypothetical protein [Nostoc s... 121 8e-27
ref|NP_614091.1| (NC_003551) Uncharacterized conserved prot... 120 1e-26
ref|NP_341803.1| (NC_002754) Conserved hypothetical protein... 117 1e-25
ref|NP_127249.1| (NC_000868) hypothetical protein [Pyrococc... 117 2e-25
ref|NP_662434.1| (NC_002932) conserved hypothetical protein... 114 1e-24
ref|NP_578188.1| (NC_003413) hypothetical protein [Pyrococc... 105 8e-22
ref|NP_376162.1| (NC_003106) 254aa long conserved hypotheti... 102 7e-21
ref|NP_279402.1| (NC_002607) Vng0300c [Halobacterium sp. NR... 83 4e-15
gb|AAK63179.1| (AY036615) Fjo14 [Flavobacterium johnsoniae] 71 1e-11
>ref|NP_207503.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||E64608 conserved hypothetical protein HP0709 - Helicobacter pylori
(strain 26695)
gb|AAD07762.1| (AE000584) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 300
Score = 601 bits (1549), Expect = e-171
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MRKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHE 60
MRKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHE
Sbjct: 1 MRKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHE 60
Query: 61 IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLT 120
IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLT
Sbjct: 61 IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLT 120
Query: 121 LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPK 180
LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPK
Sbjct: 121 LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPK 180
Query: 181 VVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKK 240
VVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKK
Sbjct: 181 VVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKK 240
Query: 241 QYEGKMPYVASFGDVPEGQPLVYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKKCAK 300
QYEGKMPYVASFGDVPEGQPLVYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKKCAK
Sbjct: 241 QYEGKMPYVASFGDVPEGQPLVYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKKCAK 300
>ref|NP_223366.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71905 hypothetical protein jhp0648 - Helicobacter pylori (strain J99)
gb|AAD06224.1| (AE001497) putative [Helicobacter pylori J99]
Length = 300
Score = 573 bits (1476), Expect = e-162
Identities = 288/300 (96%), Positives = 292/300 (97%)
Query: 1 MRKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHE 60
MRKTISALFLSACIGLSSV+A NALILQTDFSLKDGAVSAMKGVAFSVDS+LKIFDLTHE
Sbjct: 1 MRKTISALFLSACIGLSSVHASNALILQTDFSLKDGAVSAMKGVAFSVDSNLKIFDLTHE 60
Query: 61 IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLT 120
IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGT RKSVVLKTKNGQYFVSPDNGTLT
Sbjct: 61 IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTNRKSVVLKTKNGQYFVSPDNGTLT 120
Query: 121 LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPK 180
LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELP K
Sbjct: 121 LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPIK 180
Query: 181 VVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKK 240
VVEIPYQKAKATKG VKGNIPILDIQYGNVWSNISDKLLNQA IK NDT+CVTIFK SKK
Sbjct: 181 VVEIPYQKAKATKGGVKGNIPILDIQYGNVWSNISDKLLNQAGIKRNDTVCVTIFKNSKK 240
Query: 241 QYEGKMPYVASFGDVPEGQPLVYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKKCAK 300
QYEGKMPYVASFGDVPEGQPLVYLNSLLNVSVALN DNFAQK+QIKSGADWNIDIKKCAK
Sbjct: 241 QYEGKMPYVASFGDVPEGQPLVYLNSLLNVSVALNMDNFAQKHQIKSGADWNIDIKKCAK 300
>ref|NP_290443.1| (NC_002655) orf; conserved hypothetical protein [Escherichia coli
O157:H7 EDL933]
ref|NP_312771.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG59007.1|AE005612_10 (AE005612) orf; conserved hypothetical protein [Escherichia coli
O157:H7 EDL933]
dbj|BAB38167.1| (AP002567) hypothetical protein [Escherichia coli O157:H7]
Length = 300
Score = 540 bits (1392), Expect = e-153
Identities = 264/300 (88%), Positives = 284/300 (94%)
Query: 1 MRKTISALFLSACIGLSSVYADNALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHE 60
M+KT++ LFL C+G SS YADNALILQTDFSLKDGAVSAMKGVAF VD +LKIFDLTHE
Sbjct: 1 MKKTLATLFLLTCLGSSSAYADNALILQTDFSLKDGAVSAMKGVAFGVDHNLKIFDLTHE 60
Query: 61 IPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLT 120
IPPYNIWEGAYRLYQTASYWP+GSVFVSVVDPGVGT RKS+VLKTKNGQYFVSPDNGTLT
Sbjct: 61 IPPYNIWEGAYRLYQTASYWPQGSVFVSVVDPGVGTDRKSIVLKTKNGQYFVSPDNGTLT 120
Query: 121 LVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPK 180
LVA++LGI+SVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELP K
Sbjct: 121 LVAESLGIESVREIDEKANRLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPAK 180
Query: 181 VVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKK 240
VVE+ YQKAKATKGEVKGNIPILDIQYGNVWSNISD+LLNQA IKLNDTLCVTI +GS++
Sbjct: 181 VVELSYQKAKATKGEVKGNIPILDIQYGNVWSNISDELLNQAGIKLNDTLCVTISEGSRQ 240
Query: 241 QYEGKMPYVASFGDVPEGQPLVYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKKCAK 300
+Y GKMPYVASFGDVPEGQP+VYLNSLLNVSVALN DNFAQK+Q+ SGADWNID+KKC K
Sbjct: 241 KYAGKMPYVASFGDVPEGQPMVYLNSLLNVSVALNMDNFAQKHQVASGADWNIDVKKCDK 300
>ref|NP_358022.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAK99232.1| (AE008423) Conserved hypothetical protein [Streptococcus pneumoniae
R6]
Length = 291
Score = 291 bits (745), Expect = 6e-78
Identities = 145/277 (52%), Positives = 197/277 (70%), Gaps = 1/277 (0%)
Query: 22 DNALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWP 81
+N L+LQ+DF L DGAVSAM GVA LKI LTH+I PYNI+EG+YRL+QT YWP
Sbjct: 12 NNLLVLQSDFGLVDGAVSAMIGVALEESPTLKIHHLTHDITPYNIFEGSYRLFQTVDYWP 71
Query: 82 KGSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRL 141
+G+ FVSVVDPGVG+KRKSVV KT QY V+PDNGTL+ + + +GI ++REI E ANR
Sbjct: 72 EGTTFVSVVDPGVGSKRKSVVAKTAKNQYIVTPDNGTLSFIKKHVGIVAIREISEVANRR 131
Query: 142 KGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELP-PKVVEIPYQKAKATKGEVKGNI 200
+ +E SYTFHGRDVYAYTGA+LASG ITFE+VGPEL ++VE+P VKG I
Sbjct: 132 QNTEHSYTFHGRDVYAYTGAKLASGHITFEEVGPELSVDQIVELPVVATIIEDHLVKGAI 191
Query: 201 PILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQP 260
ILD+++G++W++I+ + + + + D VTI+ Y+ ++ Y SF DV GQP
Sbjct: 192 DILDVRFGSLWTSITREEFYKLEPEFGDRFEVTIYHADMLVYQNQVVYGKSFADVRIGQP 251
Query: 261 LVYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKK 297
++Y+NSL + +A+N+ +FA+ Y + G+ W I+IKK
Sbjct: 252 ILYINSLYRLGLAINQGSFAKAYNVGVGSSWTIEIKK 288
>ref|NP_345000.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK74640.1| (AE007360) conserved hypothetical protein [Streptococcus pneumoniae
TIGR4]
Length = 291
Score = 291 bits (745), Expect = 6e-78
Identities = 145/277 (52%), Positives = 197/277 (70%), Gaps = 1/277 (0%)
Query: 22 DNALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWP 81
+N L+LQ+DF L DGAVSAM GVA LKI LTH+I PYNI+EG+YRL+QT YWP
Sbjct: 12 NNLLVLQSDFGLVDGAVSAMIGVALEESPTLKIHHLTHDITPYNIFEGSYRLFQTVDYWP 71
Query: 82 KGSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRL 141
+G+ FVSVVDPGVG+KRKSVV KT QY V+PDNGTL+ + + +GI ++REI E ANR
Sbjct: 72 EGTTFVSVVDPGVGSKRKSVVAKTAKNQYIVTPDNGTLSFIKKHVGIVAIREISEVANRR 131
Query: 142 KGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELP-PKVVEIPYQKAKATKGEVKGNI 200
+ +E SYTFHGRDVYAYTGA+LASG ITFE+VGPEL ++VE+P VKG I
Sbjct: 132 QNTEHSYTFHGRDVYAYTGAKLASGHITFEEVGPELSVEQIVELPVVATIIEDHLVKGAI 191
Query: 201 PILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQP 260
ILD+++G++W++I+ + + + + D VTI+ Y+ ++ Y SF DV GQP
Sbjct: 192 DILDVRFGSLWTSITREEFYKLEPEFGDRFEVTIYHADMLVYQNQVVYGKSFADVRIGQP 251
Query: 261 LVYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKK 297
++Y+NSL + +A+N+ +FA+ Y + G+ W I+IKK
Sbjct: 252 ILYINSLYRLGLAINQGSFAKAYNVGVGSSWTIEIKK 288
>ref|NP_373210.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_375805.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_647422.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB43784.1| (AP003138) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB58848.1| (AP003366) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB96470.1| (AP004831) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 282
Score = 280 bits (717), Expect = 1e-74
Identities = 137/276 (49%), Positives = 192/276 (68%), Gaps = 1/276 (0%)
Query: 23 NALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPK 82
N L+LQ+DF L DGAVSAM GVA++V +++ +LTH+IPPY+IW +YRLYQT YWPK
Sbjct: 3 NYLVLQSDFGLSDGAVSAMYGVAYTVSDDIRVENLTHDIPPYDIWVASYRLYQTVKYWPK 62
Query: 83 GSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLK 142
G+VFVSVVDPGVG+ R+S+ T +G Y ++PDNG+L+ + GI V EIDE +RL
Sbjct: 63 GTVFVSVVDPGVGSDRRSIACLTYSGHYIITPDNGSLSHIKHYEGIKKVIEIDEVKSRLP 122
Query: 143 GSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPKVVE-IPYQKAKATKGEVKGNIP 201
SE+S+TFHGRDVYAY GARLA+ I FE++G + +E + ++A + V G+I
Sbjct: 123 HSEESHTFHGRDVYAYNGARLAANKIAFERLGQAINVDSIEALEIREATKNEDSVTGSID 182
Query: 202 ILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPL 261
ILDI++G++W+NI L +I + L VTI+ KK Y+ + + SF DV G+PL
Sbjct: 183 ILDIRFGSLWTNIPLAFLKSLEIVHGNNLVVTIYHQDKKVYQNIIKFARSFADVNVGEPL 242
Query: 262 VYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKK 297
VY+NSL+N+ VA+N+D+F+ Y I +G DW I + K
Sbjct: 243 VYVNSLVNIGVAVNQDSFSDLYHIGTGNDWTIHLSK 278
>gb|AAL04082.1|AF397166_7 (AF397166) unknown [Streptococcus mutans]
Length = 281
Score = 278 bits (712), Expect = 4e-74
Identities = 140/278 (50%), Positives = 190/278 (67%), Gaps = 1/278 (0%)
Query: 21 ADNALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYW 80
++N L+LQ+DF L DGAVSAM GVA L I +LTHEI PYNI+E +YRL+QT YW
Sbjct: 2 SNNLLVLQSDFGLVDGAVSAMIGVALQEAPTLGIHNLTHEITPYNIFEASYRLFQTVEYW 61
Query: 81 PKGSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANR 140
P+G+ FVSVVDPGVG+ RKSVV T QY V+PDNGTL+ + + +GI +VREI E NR
Sbjct: 62 PQGTTFVSVVDPGVGSDRKSVVALTSRNQYIVTPDNGTLSYIKKHVGIKAVREISEIENR 121
Query: 141 LKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELP-PKVVEIPYQKAKATKGEVKGN 199
+ +E SYTFHGRDVYA+TGA+LAS I+FE+VGPEL +VE+P + V+G
Sbjct: 122 RRNTELSYTFHGRDVYAFTGAKLASDHISFEEVGPELAIESIVELPVVETVIEDNLVRGA 181
Query: 200 IPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQ 259
+ ILD+++G++W++I+ + K + ND VTI+ Y+ ++ Y SF V GQ
Sbjct: 182 VDILDVRFGSLWTSITREEFYTLKPEFNDRFEVTIYNNDMLVYQNQVTYGKSFAAVRIGQ 241
Query: 260 PLVYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKK 297
P++Y+NSL V VA+N+ +FA Y + G W I+IKK
Sbjct: 242 PIIYINSLYRVGVAINQGSFANAYNVGVGPQWRIEIKK 279
>ref|NP_472061.1| (NC_003212) conserved hypothetical proteins [Listeria innocua]
emb|CAC97958.1| (AL596173) conserved hypothetical proteins [Listeria innocua]
Length = 280
Score = 262 bits (669), Expect = 4e-69
Identities = 128/274 (46%), Positives = 183/274 (66%), Gaps = 1/274 (0%)
Query: 25 LILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84
L+LQ+DF + DGAVSAM GV SV S L+I+DLTH+IP +NIWE +YRL QT YWP+ +
Sbjct: 6 LVLQSDFGISDGAVSAMYGVINSVSSDLQIYDLTHQIPQFNIWEASYRLLQTVPYWPEAT 65
Query: 85 VFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGS 144
+FVS+VDPGVG+KR+SVV+ T++G Y ++PDNGTLT +A I +VR IDE+ NRL S
Sbjct: 66 IFVSIVDPGVGSKRRSVVVLTEDGHYIITPDNGTLTHIAHYGTIKAVRLIDEEKNRLPRS 125
Query: 145 EKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPK-VVEIPYQKAKATKGEVKGNIPIL 203
S+TFHGRD++AYT ARLA+G I+FE +GPE P+ +V + + + G I I+
Sbjct: 126 GASHTFHGRDIFAYTAARLAAGVISFEDIGPEATPESIVSLSLSDSYLEDEQAYGTIDII 185
Query: 204 DIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLVY 263
D +GN+W+NI Q K D++ V I + Y+ + Y SF D+ G+ L+Y
Sbjct: 186 DRPFGNLWTNIRRTDFLQLGAKYGDSIEVLIKHHDRVVYKNFVTYSRSFADLRIGEALIY 245
Query: 264 LNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKK 297
+NSL N+ + +N+ +F Y + +G W + +KK
Sbjct: 246 VNSLDNLGLGINQGSFVDAYSVGTGTSWKVSLKK 279
>ref|NP_466110.1| (NC_003210) conserved hypothetical proteins [Listeria monocytogenes
EGD-e]
emb|CAD00665.1| (AL591983) conserved hypothetical proteins [Listeria monocytogenes]
Length = 280
Score = 251 bits (641), Expect = 7e-66
Identities = 123/274 (44%), Positives = 178/274 (64%), Gaps = 1/274 (0%)
Query: 25 LILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84
L+LQ+DF + DGAVSAM GV SV L+I+DLTH+IP +NIWE +YRL QT +YWP+ +
Sbjct: 6 LVLQSDFGISDGAVSAMYGVINSVSIDLQIYDLTHQIPQFNIWEASYRLLQTVTYWPEDT 65
Query: 85 VFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGS 144
+FVS+VDPGVG+KR+SV + T++G Y ++PDNGTLT +A I +VR IDE+ NRL S
Sbjct: 66 IFVSIVDPGVGSKRRSVAVLTEDGHYIITPDNGTLTHIAHYGTIKAVRLIDEEKNRLPKS 125
Query: 145 EKSYTFHGRDVYAYTGARLASGAITFEQVGPEL-PPKVVEIPYQKAKATKGEVKGNIPIL 203
S+TFHGRD++AYT ARLA+G I FE +GP P +V + + + G I I+
Sbjct: 126 GASHTFHGRDIFAYTAARLAAGVINFEDIGPAANPDSIVSLSLSDSYLEGDQAFGTIDII 185
Query: 204 DIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLVY 263
D +GN+W+NI + D++ V I + Y+ + Y SF D+ G+ L+Y
Sbjct: 186 DRPFGNLWTNIRRTDFFELGANYGDSIEVLIKHHDRIVYKNFVTYSRSFADLRIGEALIY 245
Query: 264 LNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKK 297
+NSL N+ + +N+ +F Y + +G W + +KK
Sbjct: 246 VNSLDNLGLGINQGSFVDAYSVGTGTSWKVTLKK 279
>ref|NP_228469.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||A72349 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35744.1|AE001739_7 (AE001739) conserved hypothetical protein [Thermotoga maritima]
Length = 263
Score = 155 bits (392), Expect = 5e-37
Identities = 97/265 (36%), Positives = 151/265 (56%), Gaps = 9/265 (3%)
Query: 29 TDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGSVFVS 88
TD+ LK V K V ++ +I D+THE+ P+N+ + ++ LY+ + +P +VF+
Sbjct: 6 TDWGLKSHYVGVAKAVIKRINPSAEIIDITHEVEPFNVRKASHVLYRASLDFPPSTVFLV 65
Query: 89 VVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSY 148
VVD GVGT RK++V+KTKN QYFV+PDNG LT+VA+ G+ +REI+ + K S+
Sbjct: 66 VVDYGVGTSRKAIVMKTKNDQYFVAPDNGVLTVVAEEYGVAEIREIENRELFYK-KNPSF 124
Query: 149 TFHGRDVYAYTGARLASGAITFEQVGPELPPKVVEIPYQKAKATKGEVKGNIPILDIQYG 208
TFHGRD++A A L G + E+VG L V + +K +V G + I+D +G
Sbjct: 125 TFHGRDIFAPVAAHLDMG-LPLERVGDRLLSYEV-LKMRKPVVENEKVIGEVAIVD-TFG 181
Query: 209 NVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLVYLNSLL 268
NV +NI L + + +D + V + G K E K +FGDV G+ LV+ +S
Sbjct: 182 NVSTNIPFDLFLKLSVDFDDVVRVRV--GRK---EFKAAVAKAFGDVDTGELLVHPDSAG 236
Query: 269 NVSVALNRDNFAQKYQIKSGADWNI 293
+ +A+N + +Q +K G + I
Sbjct: 237 FLEIAVNLGDASQVLSVKEGDEIEI 261
>ref|NP_560873.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL65055.1| (AE009942) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 259
Score = 150 bits (380), Expect = 1e-35
Identities = 96/281 (34%), Positives = 158/281 (56%), Gaps = 32/281 (11%)
Query: 25 LILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84
+ L TDF +D V+AMKGV S++ I D+THEIPP ++W GA+ L ++P G+
Sbjct: 3 IALLTDFGTRDYFVAAMKGVILSINPKAVIIDITHEIPPQDVWTGAFVLKSAYKWFPSGT 62
Query: 85 VFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGS 144
+F++VVDPGVGT+R +++KT+ YFV PDNG L+L A+ G+++V +I+ K R+
Sbjct: 63 IFLAVVDPGVGTERLPLIIKTRR-YYFVGPDNGLLSLAAEEDGVEAVYKIEAKLPRI--- 118
Query: 145 EKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPKVVEIPYQ---KAKATKGEVKGNI- 200
S TFHGRDV+A A L+ G + P+++ +P + K + V+ N+
Sbjct: 119 --STTFHGRDVFAPAAAYLSLG----------IEPRLLGVPVKSWIKLEFPAPRVEDNVI 166
Query: 201 ---PILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPE 257
I ++GNV+++ ++ A + DTLC F+ + + K +V ++G
Sbjct: 167 HARAIYVDRFGNVYTSAREEAFQIA--QYGDTLC---FEAEGRIIKAK--FVETYGRARA 219
Query: 258 GQPLVYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKKC 298
G+ + +NS + +A+ N A Y +K G D + I+KC
Sbjct: 220 GETVALINSEGYLELAVAMGNAASTYGLKPGLD--LKIRKC 258
>ref|NP_142440.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||H71157 hypothetical protein PH0463 - Pyrococcus horikoshii
dbj|BAA29549.1| (AP000002) 256aa long hypothetical protein [Pyrococcus horikoshii]
Length = 256
Score = 134 bits (336), Expect = 2e-30
Identities = 87/271 (32%), Positives = 146/271 (53%), Gaps = 21/271 (7%)
Query: 25 LILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84
+ L TDF LK V MK ++ + KI D+TH + ++I EG++ + Q Y PKG+
Sbjct: 2 ITLTTDFGLKGPYVGEMKVAMLRINPNAKIVDVTHSVTRHSILEGSFVMEQVVKYSPKGT 61
Query: 85 VFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVRE-IDEKANRLKG 143
V V V+DPGVGT+R+++V+ + QY V PDNG TL + + + SV E I +K + G
Sbjct: 62 VHVGVIDPGVGTERRAIVI--EGDQYLVVPDNGLATLPLKHIKVKSVYEIIPDKIRKFTG 119
Query: 144 SEKSYTFHGRDVYAYTGARLASGAITFEQVGPELP-PKVVEIPYQKAKATKGEVKGNIPI 202
E S TFHGRD++ GA + G I E+ G E+P +V++ + K +G++ I
Sbjct: 120 WEISSTFHGRDIFGPAGALIEKG-IHPEEFGREIPVDSIVKLNVEPRK------EGDVWI 172
Query: 203 LDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLV 262
L + Y + + N+ L N K + + L + ++PY+ ++G V +G+ L
Sbjct: 173 LKVIYIDDFGNVILNLENYEKPRTVELL----------DFNLRLPYLETYGLVEKGEMLA 222
Query: 263 YLNSLLNVSVALNRDNFAQKYQIKSGADWNI 293
S + +A+N + A++ +K G + +
Sbjct: 223 LPGSHDYLEIAVNMGSAAERLNVKVGDELRV 253
>ref|NP_214509.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
pir||H70488 conserved hypothetical protein aq_2196 - Aquifex aeolicus
gb|AAC07908.1| (AE000777) hypothetical protein [Aquifex aeolicus]
Length = 251
Score = 132 bits (333), Expect = 4e-30
Identities = 77/191 (40%), Positives = 118/191 (61%), Gaps = 6/191 (3%)
Query: 24 ALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKG 83
A++L TDF KDG V A+KGV S++ ++I DL+HE+ +N+ EGA L SY+P+
Sbjct: 2 AIVLLTDFGTKDGFVGAVKGVILSINPSVQIVDLSHEVDSFNVLEGALLLKAHYSYFPEK 61
Query: 84 SVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKG 143
SVFV VVDPGVG++RK +++KT+ +FV PDNG LV + V EI K +
Sbjct: 62 SVFVGVVDPGVGSERKGIIVKTEK-YFFVGPDNGLFDLVIKEAKDFEVYEI--KNEKFTL 118
Query: 144 SEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPKVVEIPYQKAKATKGEVKGNIPIL 203
+K+ TFHGRDV+A A L+ G + E++GP + + ++ + + K K ++G I
Sbjct: 119 PKKNNTFHGRDVFAPVAAYLSKG-VKPEEIGPRIEYR-EKLKFPEPKREKDFIEGEIIYF 176
Query: 204 DIQYGNVWSNI 214
D ++GN +N+
Sbjct: 177 D-KFGNAITNV 186
>ref|NP_248661.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q59045|YG51_METJA Hypothetical protein MJ1651
pir||A64506 hypothetical protein MJ1651 - Methanococcus jannaschii
gb|AAB99672.1| (U67605) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 263
Score = 126 bits (317), Expect = 3e-28
Identities = 84/214 (39%), Positives = 121/214 (56%), Gaps = 27/214 (12%)
Query: 25 LILQTDFSLKDGAVSAMKGVAFSV----DSHLKIFDLTHEIPPYNIWEGAYRLYQTASYW 80
+ L TDF +G V AMKG ++ + KI D++HEI P+NI+ GAY L Y+
Sbjct: 13 ITLTTDFGTNEGYVGAMKGRILNILKKYNKDAKIIDISHEIKPFNIYHGAYVLLTAIPYF 72
Query: 81 PKGSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANR 140
P SV V+V+DP VG++RKS+V++TK+G Y V PDNG T VA+ LGI + +IDE+ +
Sbjct: 73 PP-SVHVAVIDPTVGSERKSIVIETKSGYYLVGPDNGLFTYVAEKLGIKRIIKIDEERYK 131
Query: 141 LKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPKVVEIPYQKAKATKGEVKGNI 200
S TFHGRDVYA GA + I G EL ++V+I E K +
Sbjct: 132 -----PSSTFHGRDVYAVVGAEI---LINNGYDGEEL-DEMVKI---------DETKKRV 173
Query: 201 PILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTI 234
+D ++GN+ +NI ++ K DT+ + I
Sbjct: 174 IHID-RFGNIITNIKK---DEVTFKYYDTIMIKI 203
>ref|NP_633041.1| (NC_003901) conserved protein [Methanosarcina mazei Goe1]
gb|AAM30713.1| (AE013328) conserved protein [Methanosarcina mazei Goe1]
Length = 262
Score = 124 bits (312), Expect = 1e-27
Identities = 89/254 (35%), Positives = 135/254 (53%), Gaps = 19/254 (7%)
Query: 39 SAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTKR 98
+AMK V ++ +I D+TH I +I EGA+ LY Y+P SV V VVDPGVGT R
Sbjct: 16 AAMKAVILGINPEAQIVDVTHSIRQASIREGAFALYSLVPYFPAKSVHVGVVDPGVGTSR 75
Query: 99 KSVVLKT---KNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDV 155
+++ LK Q+FV PDNG + A+ LG V EI + L SE S TFHGRD+
Sbjct: 76 RALALKAGPEGEEQFFVGPDNGLMIPAARRLGDMEVYEITNREIML-NSEISATFHGRDI 134
Query: 156 YAYTGARLASGAITFEQVGPELPPKVVEIPYQKAKATKGEVKGNIPILDIQYGNVWSNIS 215
+A GARL+ G + E VG + V + ++ + G + D +GNV +NI
Sbjct: 135 FAPVGARLSKG-MPIETVGNRV-SDFVNLDFENYGVDGQFLVGEVVYTD-NFGNVITNIP 191
Query: 216 DKLLNQAKIKLNDTLCVTIFKGSKKQYEG-KMPYVASFGDVPEGQPLVYLNSLLNVSVAL 274
+ A +K GS+ + G K+ +V ++G V +G L+ + S + +A+
Sbjct: 192 E----DAVLKFRTF-------GSQVEVNGRKVFFVQTYGFVGQGDALILIGSHGFLEIAI 240
Query: 275 NRDNFAQKYQIKSG 288
N+ N A ++ ++SG
Sbjct: 241 NKGNAALQFGLRSG 254
>ref|NP_148551.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||G72461 hypothetical protein APE2338 - Aeropyrum pernix (strain K1)
dbj|BAA81351.1| (AP000064) 316aa long hypothetical protein [Aeropyrum pernix]
Length = 316
Score = 123 bits (308), Expect = 3e-27
Identities = 89/271 (32%), Positives = 141/271 (51%), Gaps = 25/271 (9%)
Query: 41 MKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTKRKS 100
M+ V S+ L+I D+ H IP ++ GAY + T + PKGSV V+VVDPGVGT R +
Sbjct: 23 MRAVIKSISRELQIIDIDHSIPSFSPLAGAYVVAHTYQWLPKGSVIVAVVDPGVGTSRYA 82
Query: 101 VVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEK-------------ANRLKGSEKS 147
+ ++T+N F+ PDNG L A + GI V + EK A +K S
Sbjct: 83 LAVETEN-YVFIGPDNGVLYPAAASDGIKRVYALREKDVNSLARMKTSSTAGTVKPWSIS 141
Query: 148 YTFHGRDVYAYTGARLASGAITFEQVGPELPP---KVVEIPYQKAKATKGEVKGNIPILD 204
TFHGRDV+A GA +A+G + E++G E+ P K I + + K + + +D
Sbjct: 142 RTFHGRDVFAPAGALIAAGHASLEELGDEIEPERMKRASIDHVE-KLGPSTFRATVVYID 200
Query: 205 IQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLVYL 264
++GNV +I K K+ +N +L ++ G+ + +FGD G+ + Y
Sbjct: 201 -KFGNVALSIRPK-----KLGINLSLYKSVVLGTHTT-SNTIRMGKTFGDANPGELVAYE 253
Query: 265 NSLLNVSVALNRDNFAQKYQIKSGADWNIDI 295
NS ++ +A+NR N A+K ++ A I++
Sbjct: 254 NSFGHLEIAVNRGNAAKKLGLELEARVEIEL 284
>ref|NP_069297.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||E69307 conserved hypothetical protein AF0461 - Archaeoglobus fulgidus
gb|AAB90776.1| (AE001073) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 251
Score = 122 bits (306), Expect = 5e-27
Identities = 86/267 (32%), Positives = 139/267 (51%), Gaps = 29/267 (10%)
Query: 27 LQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGSVF 86
L TDF D MKGV S+ +I D+TH + P NI +GA+ LY + Y+ + +V
Sbjct: 6 LLTDFG--DFYPGVMKGVILSLAPEARIVDITHSVEPQNILQGAFLLYHSFRYF-RNAVH 62
Query: 87 VSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEK 146
V+VVDPGVG++R+++V++ KN +FV PDNG L A GI + I E+ + L G E
Sbjct: 63 VAVVDPGVGSERRALVIEGKN-HFFVGPDNGILYPSAVEDGIKAAYSIKEEISELVG-EL 120
Query: 147 SYTFHGRDVYAYTGARLASGAIT-FEQVGPELPPKVVEIPYQKAKATKGEVKGNIPILDI 205
S TFHGRD++A A + G T FE++ E ++ ++ +V+ + +D
Sbjct: 121 SSTFHGRDIFAPAAAMVVRGDYTYFEEINKE---ELEKLELFDCSIQGNKVRCRVVYVD- 176
Query: 206 QYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEG-KMPYVASFGDVPEGQPLVYL 264
++GNV +N+ + KG + G + P+V ++ DV G+PL +
Sbjct: 177 RFGNVVTNLRE------------------VKGKGFYFRGVEFPFVKTYSDVDVGKPLSLI 218
Query: 265 NSLLNVSVALNRDNFAQKYQIKSGADW 291
S + +++ + A+ IK G W
Sbjct: 219 GSFGTLELSVREGSAAEMLGIKRGGGW 245
>ref|NP_619182.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07662.1| (AE011150) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 262
Score = 122 bits (305), Expect = 6e-27
Identities = 91/270 (33%), Positives = 140/270 (51%), Gaps = 21/270 (7%)
Query: 23 NALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPK 82
+ + L TDF D ++MK V ++ ++I D+TH I I EGA+ LY Y+
Sbjct: 2 SVISLTTDFG--DLYPASMKAVILGINPEVRIVDITHSIRQAGIREGAFALYSLVPYFSA 59
Query: 83 GSVFVSVVDPGVGTKRKSVVLKTKN---GQYFVSPDNGTLTLVAQTLGIDSVREIDEKAN 139
SV V V+DPGVGT R+++ +K + Q+FV PDNG L A+ LG V EI K
Sbjct: 60 KSVHVGVIDPGVGTSRRALAVKAGSKGEEQFFVGPDNGLLIPAARRLGEMEVYEITNKDL 119
Query: 140 RLKGSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPKVVEIPYQKAKATKGEVKGN 199
LK S S TFHGRD++A GARL+ G + + VG + V++ + + G
Sbjct: 120 MLK-SGVSATFHGRDIFAPVGARLSKG-MPIDVVGNRI-SDFVDLDFGNFGVDGPFLVGE 176
Query: 200 IPILDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEG-KMPYVASFGDVPEG 258
+ D +GNV +NI + D + GSK + G K+ +V ++G V +
Sbjct: 177 VVFSD-GFGNVITNIPE-----------DAVLKFCTFGSKVEVNGRKVSFVRTYGFVGQE 224
Query: 259 QPLVYLNSLLNVSVALNRDNFAQKYQIKSG 288
+ L + S + +A+N+ N A ++ +KSG
Sbjct: 225 EALALIGSHGFLEIAINKGNAALQFGLKSG 254
>ref|NP_485370.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB73284.1| (AP003585) ORF_ID:all1327~hypothetical protein [Nostoc sp. PCC
7120]
Length = 266
Score = 121 bits (304), Expect = 8e-27
Identities = 86/263 (32%), Positives = 138/263 (51%), Gaps = 20/263 (7%)
Query: 25 LILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84
L L +DF +D VS MKGV ++ L++ DLTH+IPP NI + L Y+P+G+
Sbjct: 11 LTLLSDFGDRDVYVSVMKGVIAQINPKLQVVDLTHQIPPQNIAAARFCLMNACPYFPEGT 70
Query: 85 VFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGS 144
V ++VVDPGVG++R+++ ++ +G + V PDNG + V +V E+ + +
Sbjct: 71 VHIAVVDPGVGSRRRAIAVEFADG-FLVGPDNGIFSGVLSQSPAMAVVEL-TNSQYWRTP 128
Query: 145 EKSYTFHGRDVYAYTGARLASGAITFEQVGPEL-PPKVVEIPYQKAKATKGEVKGNIPIL 203
E S TFHGRD++A GA LASG ++ + +G E+ P +V++ + T G+I +
Sbjct: 129 EPSKTFHGRDIFAPVGAHLASG-VSLQHLGQEIEPASLVQMNMKNCTQTATGWSGSIQYI 187
Query: 204 DIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKM-PYVASFGDVPEGQPLV 262
D +GN+ SNI + K CV Q G M P ++ +V G+
Sbjct: 188 D-YFGNLVSNIPGDCIQGKK------WCV--------QVSGLMIPGCDTYSNVKLGEATA 232
Query: 263 YLNSLLNVSVALNRDNFAQKYQI 285
+ S V +A+N + + QI
Sbjct: 233 LIGSHGWVEIAINSGDAHSQLQI 255
>ref|NP_614091.1| (NC_003551) Uncharacterized conserved protein [Methanopyrus
kandleri AV19]
gb|AAM02021.1| (AE010372) Uncharacterized conserved protein [Methanopyrus kandleri
AV19]
Length = 261
Score = 120 bits (302), Expect = 1e-26
Identities = 80/258 (31%), Positives = 139/258 (53%), Gaps = 13/258 (5%)
Query: 25 LILQTDFSLKDGAVSAMKGVAFSVDSH-LKIFDLTHEIPPYNIWEGAYRLYQTASYWPKG 83
+ L TDF L + +K V + + + I D+THE+P ++ G+Y + ++P G
Sbjct: 2 ITLTTDFGLGSPYPAQVKAVILRIAAPGVDIVDVTHEVPAQDVVAGSYVMSVACPWFPPG 61
Query: 84 SVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKG 143
SV V VVDPGVGT+R++V+L+ + G + V PDNG L +A+ LG VR + +
Sbjct: 62 SVHVGVVDPGVGTERRAVLLEAERGDFLVGPDNGLLIPLAEELG-GIVRAFRILEDEVSD 120
Query: 144 SEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPKVVEIPYQKAKATKGEVKGNIPIL 203
E S TFHGRDV+A AR+ASG P P ++VE P + + G V+ + +
Sbjct: 121 WEVSATFHGRDVFAPAAARVASGESPERFCEPLDPEELVEPPIAEPEVDDGHVRAQVWFV 180
Query: 204 DIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLVY 263
D +GN+ +N+ ++ L +T+ + + S + +E + +V ++G+ G +V
Sbjct: 181 D-DFGNIITNVL-----YDEVDLPETVTIRV---SGESFEAR--HVHTYGEADSGDLVVL 229
Query: 264 LNSLLNVSVALNRDNFAQ 281
+S ++ +A+ + A+
Sbjct: 230 RSSSDHLEIAVVEGSAAE 247
>ref|NP_341803.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK40593.1| (AE006661) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 281
Score = 117 bits (294), Expect = 1e-25
Identities = 80/267 (29%), Positives = 134/267 (49%), Gaps = 12/267 (4%)
Query: 23 NALILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPK 82
N + + TDF L D M+ V ++ KI ++ P+N+ GAY LY + Y+P+
Sbjct: 9 NQIAILTDFGLNDNYNGVMEAVIKKINPEAKITYISGNSKPFNLIAGAYLLYTSYKYFPR 68
Query: 83 GSVFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLK 142
++F+ V+DPGVGT R+ +++KTKN F+ PDNG L + I + EI + L
Sbjct: 69 NTIFLVVIDPGVGTSRRPLIIKTKN-YVFIGPDNGVLYPAITSEEIVKIIEIKNEKLYL- 126
Query: 143 GSEKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPKVVEIPYQKAKATKGEVKGNIPI 202
S TFHGRD+++ A ++ G + + G ++ + + K +K E+ G +
Sbjct: 127 AKTISNTFHGRDIFSVAAAFISIG-VEIDTFGNQVRYEDLTKLNFTYKPSKSEICGKVLY 185
Query: 203 LDIQYGNVWSNI-SDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPL 261
+D +GNV ++I + LLN K N + V K K +V +FG E + L
Sbjct: 186 ID-HFGNVATSIPKEVLLNNFKYDENIEIKVNNSK-------HKCRFVKTFGYGMENELL 237
Query: 262 VYLNSLLNVSVALNRDNFAQKYQIKSG 288
+Y N V + +N+ + K ++ G
Sbjct: 238 IYFNGYFLVEIGINKGSAKDKLNVREG 264
>ref|NP_127249.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||A75005 hypothetical protein PAB1317 - Pyrococcus abyssi (strain Orsay)
emb|CAB50479.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
Length = 256
Score = 117 bits (292), Expect = 2e-25
Identities = 81/271 (29%), Positives = 140/271 (50%), Gaps = 21/271 (7%)
Query: 25 LILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84
+ L TDF L+ V MK V+ KI D+TH + ++I EG++ + Q Y P+G+
Sbjct: 2 ITLITDFGLRGPYVGEMKVAMLKVNPDAKIVDVTHSVTRHSIIEGSFVMEQVVKYSPEGT 61
Query: 85 VFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVRE-IDEKANRLKG 143
V V V+DPGVGT+R+++V++ + QY V PDNG TL + + E I ++ + G
Sbjct: 62 VHVGVIDPGVGTERRAIVVEGE--QYLVVPDNGLATLPLKHIKPKKAYEIIPQEIKKFTG 119
Query: 144 SEKSYTFHGRDVYAYTGARLASGAITFEQVGPELP-PKVVEIPYQKAKATKGEVKGNIPI 202
S TFHGRD++ A + G ++ E+ G E+P +V++ + K ++ I
Sbjct: 120 WRISSTFHGRDLFGPAAALIDKG-VSPEEFGREIPLDSLVKLNLESRKV------NDVWI 172
Query: 203 LDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLV 262
L + Y + + N+ L + K + L + K+PY+ ++G V EG+ L
Sbjct: 173 LKVIYVDDFGNVILNLEGYERPKFVELL----------DFNLKLPYLDTYGLVGEGEMLA 222
Query: 263 YLNSLLNVSVALNRDNFAQKYQIKSGADWNI 293
S + +A+NR + A++ +K G + +
Sbjct: 223 LPGSHDYLEIAVNRGSAAERLGVKVGDELRV 253
>ref|NP_662434.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72776.1| (AE012910) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 265
Score = 114 bits (286), Expect = 1e-24
Identities = 81/277 (29%), Positives = 140/277 (50%), Gaps = 31/277 (11%)
Query: 29 TDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGSVFVS 88
TDF L+D V MKGV ++ ++ DLTH I N+ + A+ L ++ SY+P ++FV
Sbjct: 11 TDFGLEDAFVGVMKGVIATICREAQVIDLTHAISAQNVRQAAFHLDRSISYFPAETIFVC 70
Query: 89 VVDPGVGTKRKSVVLKTKNGQY-FVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKS 147
VVDPGVGT R+++ ++ G Y F++PDNG LT V + E+ A +L + S
Sbjct: 71 VVDPGVGTARRAIGVEA--GPYRFIAPDNGLLTPVFERWADAKCHELTNPAYQL--ANPS 126
Query: 148 YTFHGRDVYAYTGARLASGAITFEQVGPELPPKVVEIPYQKAKATKGEVKGNIPILDIQY 207
TFHGRD+++ A LA+G +P A T+ E+ N P
Sbjct: 127 ATFHGRDLFSPAAAHLATG----------VPLNAFGSAIDVANCTRIELWQNKP---CDN 173
Query: 208 GNVWS-------NISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQP 260
G VW+ + + + + L+D T+ G+ + +P + ++G+V +G+P
Sbjct: 174 GKVWTGEVIATDHFGNLITSFEASMLSDGEDWTVKAGNAE----PLPILRTYGEVEQGKP 229
Query: 261 LVYLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKK 297
L Y+ S + +A+ N + +++ G ++++K
Sbjct: 230 LAYIGSSGMIEIAIR--NGSASAELRVGGGDEVELRK 264
>ref|NP_578188.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL80583.1| (AE010168) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 257
Score = 105 bits (261), Expect = 8e-22
Identities = 76/275 (27%), Positives = 140/275 (50%), Gaps = 21/275 (7%)
Query: 25 LILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84
+ + TDF LK V MK ++ + ++ D+TH I ++I EG++ + Q Y P+G+
Sbjct: 2 ITITTDFGLKGPYVGEMKVAMLKLNPNARLVDVTHSITRHSILEGSFVMEQVVKYSPQGT 61
Query: 85 VFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREID-EKANRLKG 143
V + V+DPGVGT R++++++ + Q+ V PDNG TL + + EID +K +
Sbjct: 62 VHLGVIDPGVGTNRRAIIIEGE--QWLVVPDNGLATLPMKHIKPRRAYEIDMKKIKKYVT 119
Query: 144 SEKSYTFHGRDVYAYTGARLASGAITFEQVGPELP-PKVVEIPYQKAKATKGEVKGNIPI 202
E S TFHGRD++ A + G E E+P +V + + +G++ I
Sbjct: 120 WEISSTFHGRDLFGPAAALIDKGVDPLE-FSNEIPLESIVRLNITPRR------EGDVWI 172
Query: 203 LDIQYGNVWSNISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLV 262
L + Y + + N+ +LN + + + FK + +PY+ ++G V G+ L
Sbjct: 173 LKVIYVDDFGNV---ILNLEGYEKPKEVVLPDFKLT-------LPYLDTYGQVKPGEMLA 222
Query: 263 YLNSLLNVSVALNRDNFAQKYQIKSGADWNIDIKK 297
S + +A+N+ + A +IK G + + +++
Sbjct: 223 LPGSHGYLEIAVNQGSAADVLKIKVGDEIRVILRR 257
>ref|NP_376162.1| (NC_003106) 254aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65271.1| (AP000982) 254aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 254
Score = 102 bits (253), Expect = 7e-21
Identities = 78/263 (29%), Positives = 130/263 (48%), Gaps = 27/263 (10%)
Query: 41 MKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTKRKS 100
M+GV ++ ++ I +T +NI+ GAY LY Y+ KG++F+ V+DPGVGT+RK+
Sbjct: 1 MEGVIRKINPNVDITYITPNAKEFNIYAGAYLLYTAYRYFKKGTIFLVVIDPGVGTERKA 60
Query: 101 VVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG 160
+++KTKN YF+ PDNG L + I+ V I+ L S TFHGRD+++
Sbjct: 61 LLIKTKN-YYFIGPDNGVLYPSVEEDKIEKVIYINNPKLYL-SKNISNTFHGRDIFSVAA 118
Query: 161 ARLASGAITFEQVGPELPPKVVEIPYQKAKATKGEVK--------GNIPILDIQYGNVWS 212
A L+ + G E+ +E K E++ G I +D +GNV +
Sbjct: 119 AYLSLN-VDINVFGSEINKNEIE----KLSFLSNEMREDKNIIYCGKILYID-HFGNVAT 172
Query: 213 NISDKLLNQAKIKLNDTLCVTIFKGSKKQYEGKMPYVASFGDVPEGQPLVYLNSLLNVSV 272
+I K K L +KG+ E ++ V +FG+ + + L+Y N + +
Sbjct: 173 SIRIKATKNFKYLLK-------YKGN----EYELFAVKTFGEGEQNKLLLYNNGYGFLEI 221
Query: 273 ALNRDNFAQKYQIKSGADWNIDI 295
+N+ N + K G D +++
Sbjct: 222 GINKGNASIVINAKEGEDICLEV 244
>ref|NP_279402.1| (NC_002607) Vng0300c [Halobacterium sp. NRC-1]
gb|AAG18882.1| (AE004991) Vng0300c [Halobacterium sp. NRC-1]
Length = 239
Score = 82.8 bits (203), Expect = 4e-15
Identities = 73/256 (28%), Positives = 121/256 (46%), Gaps = 32/256 (12%)
Query: 41 MKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGSVFVSVVDPGVGTKRKS 100
MKGV + ++ D+ H++P ++ A+ L + Y+P +V ++VVDPGVGT R +
Sbjct: 1 MKGVVLQT-TDARLVDIAHDLPRQDVRAAAFWLREVVPYFPP-AVHLAVVDPGVGTDRSA 58
Query: 101 VVLKTKNGQYFVSPDNGTLTLVAQTLGIDS----VREIDEKANRLKGSEKSYTFHGRDVY 156
VV++ V+PDNG A+ + D+ V EID + S TFHGRDV+
Sbjct: 59 VVVRA-GSHAIVAPDNGVAVPAARRIAGDAADIDVFEIDVE------DPASATFHGRDVF 111
Query: 157 AYTGARL-ASGAITFEQVGPELPPKV--VEIPYQKAKATKGEVKGNIPILDIQYGNVWSN 213
A A + G TF+Q PE P + + T G G + +D +GN +N
Sbjct: 112 APAAADIHERGVDTFDQY-PEYEPTADYERVSFPAPAVTDGGAAGTVIAVD-GFGNAITN 169
Query: 214 ISDKLLNQAKIKLNDTLCVTIFKGSKKQYEG-KMPYVASFGDVPEGQPLVYLNSLLNVSV 272
+ +++ ++ DT+ + +G P S+ GQ L+ + S NV +
Sbjct: 170 LPGEIVAD---RVGDTV----------EVDGVATPVRRSYAHTDPGQRLLTVGSHGNVEL 216
Query: 273 ALNRDNFAQKYQIKSG 288
A+NR + + +G
Sbjct: 217 AVNRGRGDDAFGVSAG 232
>gb|AAK63179.1| (AY036615) Fjo14 [Flavobacterium johnsoniae]
Length = 276
Score = 71.2 bits (173), Expect = 1e-11
Identities = 51/192 (26%), Positives = 93/192 (47%), Gaps = 10/192 (5%)
Query: 25 LILQTDFSLKDGAVSAMKGVAFSVDSHLKIFDLTHEIPPYNIWEGAYRLYQTASYWPKGS 84
+ L TD+ LKD V ++KG S +I D++H+I P+N E +Y + + +PKG+
Sbjct: 5 ITLTTDYGLKDHFVGSLKGKIISELPDARIIDISHDIDPFNTAEASYVIGASYLSFPKGT 64
Query: 85 VFVSVVDPGVGTKRKSVVLKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGS 144
+ + VD + + + ++ N +F+ DNG L+++ Q + + EI+ +R
Sbjct: 65 IHLIGVDIERNKENQHIAMQW-NDHFFICADNGILSMLTQKIVPQKIVEINIH-DRFPAE 122
Query: 145 EKSYTFHGRDVYAYTGARLASGAITFEQVGPELPPKVVEIPYQKAKATKG-EVKGNIPIL 203
F D++ +A G + +G E+P Q A G +KG + +
Sbjct: 123 -----FSDLDIFIQVACHIAKGGL-LNVIGKEIPTVKEVTELQAVVAADGNSLKGYVIYI 176
Query: 204 DIQYGNVWSNIS 215
D +GN+ +NIS
Sbjct: 177 D-HFGNIVTNIS 187
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.316 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,933,982
Number of Sequences: 1026957
Number of extensions: 8113576
Number of successful extensions: 16833
Number of sequences better than 1.0e-02: 27
Number of HSP's better than 0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16756
Number of HSP's gapped (non-prelim): 27
length of query: 300
length of database: 324,149,939
effective HSP length: 120
effective length of query: 180
effective length of database: 200,915,099
effective search space: 36164717820
effective search space used: 36164717820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 97 (42.0 bits)