BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645334|ref|NP_207505.1| hypothetical protein
[Helicobacter pylori 26695]
(406 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207505.1| (NC_000915) hypothetical protein [Helicoba... 817 0.0
ref|NP_223368.1| (NC_000921) putative [Helicobacter pylori ... 794 0.0
ref|NP_281237.1| (NC_002163) hypothetical protein Cj0015c [... 254 2e-66
gb|AAK16079.1|AF288081_1 (AF288081) YbaA [Photorhabdus lumi... 48 2e-04
ref|NP_406090.1| (NC_003143) conserved hypothetical protein... 44 0.004
>ref|NP_207505.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64608 hypothetical protein HP0711 - Helicobacter pylori (strain 26695)
gb|AAD07769.1| (AE000584) H. pylori predicted coding region HP0711 [Helicobacter
pylori 26695]
Length = 406
Score = 817 bits (2110), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MYAAHPIKPLKAPKLKTQFLRRVFVGASIRRWNDQACPLEFVELDKQAHKAMIAYLLAKD 60
MYAAHPIKPLKAPKLKTQFLRRVFVGASIRRWNDQACPLEFVELDKQAHKAMIAYLLAKD
Sbjct: 1 MYAAHPIKPLKAPKLKTQFLRRVFVGASIRRWNDQACPLEFVELDKQAHKAMIAYLLAKD 60
Query: 61 LKDRGNDLDLDLLIKFFCFEFLERLVLTDIKPPIFYALQQTHSQELASYVVQSLQDEISM 120
LKDRGNDLDLDLLIKFFCFEFLERLVLTDIKPPIFYALQQTHSQELASYVVQSLQDEISM
Sbjct: 61 LKDRGNDLDLDLLIKFFCFEFLERLVLTDIKPPIFYALQQTHSQELASYVVQSLQDEISM 120
Query: 121 YFSLEELKEYLSHRPQILETQILESAHFYASKWEFDIIYHFNPNMYGVKEIKDKIDKQLH 180
YFSLEELKEYLSHRPQILETQILESAHFYASKWEFDIIYHFNPNMYGVKEIKDKIDKQLH
Sbjct: 121 YFSLEELKEYLSHRPQILETQILESAHFYASKWEFDIIYHFNPNMYGVKEIKDKIDKQLH 180
Query: 181 NNEHLFEGLFGEKEDLKKLVSMFGQLRFQKRWSQTPRVPQTSVLGHTLCVALMGYLLSFD 240
NNEHLFEGLFGEKEDLKKLVSMFGQLRFQKRWSQTPRVPQTSVLGHTLCVALMGYLLSFD
Sbjct: 181 NNEHLFEGLFGEKEDLKKLVSMFGQLRFQKRWSQTPRVPQTSVLGHTLCVALMGYLLSFD 240
Query: 241 LKACKSMRINHFLGGLFHDLPEILTRDIITPIKQSVAGLDHCIKEIEKKEMQNKVYSFVS 300
LKACKSMRINHFLGGLFHDLPEILTRDIITPIKQSVAGLDHCIKEIEKKEMQNKVYSFVS
Sbjct: 241 LKACKSMRINHFLGGLFHDLPEILTRDIITPIKQSVAGLDHCIKEIEKKEMQNKVYSFVS 300
Query: 301 LGVQEDLKYFTENEFKNRYKDKSNKIIFTKDAEELFTLYNSDEYLGVCGELLKVCDHLSA 360
LGVQEDLKYFTENEFKNRYKDKSNKIIFTKDAEELFTLYNSDEYLGVCGELLKVCDHLSA
Sbjct: 301 LGVQEDLKYFTENEFKNRYKDKSNKIIFTKDAEELFTLYNSDEYLGVCGELLKVCDHLSA 360
Query: 361 FLEAQISLSHGISSNDLIKGAQNLLELRSQTELLDLDLGKLFRDFK 406
FLEAQISLSHGISSNDLIKGAQNLLELRSQTELLDLDLGKLFRDFK
Sbjct: 361 FLEAQISLSHGISSNDLIKGAQNLLELRSQTELLDLDLGKLFRDFK 406
>ref|NP_223368.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71905 hypothetical protein jhp0650 - Helicobacter pylori (strain J99)
gb|AAD06226.1| (AE001497) putative [Helicobacter pylori J99]
Length = 406
Score = 794 bits (2050), Expect = 0.0
Identities = 391/406 (96%), Positives = 402/406 (98%)
Query: 1 MYAAHPIKPLKAPKLKTQFLRRVFVGASIRRWNDQACPLEFVELDKQAHKAMIAYLLAKD 60
MYAAHPIKP+KAPKLK+QFLRRVFVGASIRRWNDQACPLEFVELDKQAHKAMIAYLLAKD
Sbjct: 1 MYAAHPIKPIKAPKLKSQFLRRVFVGASIRRWNDQACPLEFVELDKQAHKAMIAYLLAKD 60
Query: 61 LKDRGNDLDLDLLIKFFCFEFLERLVLTDIKPPIFYALQQTHSQELASYVVQSLQDEISM 120
LKDRG DLDLDLLIK+FCFEFLERLVLTDIKPPIFYALQQTHS+ELASYV QSLQDEIS
Sbjct: 61 LKDRGKDLDLDLLIKYFCFEFLERLVLTDIKPPIFYALQQTHSKELASYVAQSLQDEISA 120
Query: 121 YFSLEELKEYLSHRPQILETQILESAHFYASKWEFDIIYHFNPNMYGVKEIKDKIDKQLH 180
YFSLEELKEYLSHRPQILETQILESAHFYASKWEFDIIYHFNPNMYGVKEIKDKIDKQLH
Sbjct: 121 YFSLEELKEYLSHRPQILETQILESAHFYASKWEFDIIYHFNPNMYGVKEIKDKIDKQLH 180
Query: 181 NNEHLFEGLFGEKEDLKKLVSMFGQLRFQKRWSQTPRVPQTSVLGHTLCVALMGYLLSFD 240
NN+HLFEGLFGEKEDLKKLVSMFGQLRFQKRWSQTPRVPQTSVLGHTLCVA+MGYLLSFD
Sbjct: 181 NNDHLFEGLFGEKEDLKKLVSMFGQLRFQKRWSQTPRVPQTSVLGHTLCVAIMGYLLSFD 240
Query: 241 LKACKSMRINHFLGGLFHDLPEILTRDIITPIKQSVAGLDHCIKEIEKKEMQNKVYSFVS 300
LKACKSMRINHFLGGLFHDLPEILTRDIITPIKQSVAGLDHCIKEIEKKEMQNKVYSFVS
Sbjct: 241 LKACKSMRINHFLGGLFHDLPEILTRDIITPIKQSVAGLDHCIKEIEKKEMQNKVYSFVS 300
Query: 301 LGVQEDLKYFTENEFKNRYKDKSNKIIFTKDAEELFTLYNSDEYLGVCGELLKVCDHLSA 360
LGVQEDLKYFTENEFKNRYKDKS++I+FTKDAEELFTLYNSDEYLGVCGELLKVCDHLSA
Sbjct: 301 LGVQEDLKYFTENEFKNRYKDKSHQIVFTKDAEELFTLYNSDEYLGVCGELLKVCDHLSA 360
Query: 361 FLEAQISLSHGISSNDLIKGAQNLLELRSQTELLDLDLGKLFRDFK 406
FLEAQISLSHGISS DLI+GA+NLLELRSQTELLDLDLGKLFRDFK
Sbjct: 361 FLEAQISLSHGISSYDLIQGAKNLLELRSQTELLDLDLGKLFRDFK 406
>ref|NP_281237.1| (NC_002163) hypothetical protein Cj0015c [Campylobacter jejuni]
pir||B81417 hypothetical protein Cj0015c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72508.1| (AL139074) hypothetical protein Cj0015c [Campylobacter jejuni]
Length = 408
Score = 254 bits (648), Expect = 2e-66
Identities = 138/399 (34%), Positives = 232/399 (57%), Gaps = 27/399 (6%)
Query: 15 LKTQFLRRVFVGASIRRWNDQACPLEFVELDKQAHKAMIAYLLAKDLKDRGNDLDLDLLI 74
+ + + +F ASI RWND VELDKQAHK +IAY +AK KD +D+ ++I
Sbjct: 2 INIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFIAKMEKD----VDMRVII 57
Query: 75 KFFCFEFLERLVLTDIKPPIFYALQQTHSQELASYVVQSLQ---DEISMYFSLEELKEYL 131
+ FEFL R+V+TDI+P +++ + + E+ ++V+ ++ ++I L+ + YL
Sbjct: 58 EGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIEDIEDGEFLKRFEAYL 117
Query: 132 SHRPQILETQILESAHFYASKWEFDIIYHFNPNMYGVKEIKDKIDKQLHNNEHLFEGL-F 190
+ E IL++A ++A++WEF+I+Y + + + EIK+K++++L + L
Sbjct: 118 NGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNKVEEELEDYYELIGARKI 177
Query: 191 GEKEDLKKLVSMFGQLRFQKRWSQTPRVPQTSVLGHTLCVALMGYLLSFDLKACKSMRIN 250
+ + K++ + G+LRFQKRW+QTPR+P+T+VLGH L VA++GY S +KAC N
Sbjct: 178 ALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVAILGYFYSLKIKACDKRLEN 237
Query: 251 HFLGGLFHDLPEILTRDIITPIKQSVAGLDHCIKEIEKKEMQNKVYSFVSLGVQEDLKY- 309
+F LFHDLPE LTRDII+P+K + GL I + E K + ++ FV G++ + Y
Sbjct: 238 NFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMKLINERILPFVPEGLRAEFSYI 297
Query: 310 ------------FTENEFKNR-YKDKSNKIIFTKDAEELFTLYNSDEYLGVCGELLKVCD 356
F +NEF+NR YK+ ++ + +N +E+ + G+ LK CD
Sbjct: 298 LGIREGRNGESNFVKNEFENRTYKNAKIEL-----CSGSLSSFNENEFGAIDGKALKYCD 352
Query: 357 HLSAFLEAQISLSHGISSNDLIKGAQNLLELRSQTELLD 395
++A++EA +S+S+G+ S +L G + E + +D
Sbjct: 353 KIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTID 391
>gb|AAK16079.1|AF288081_1 (AF288081) YbaA [Photorhabdus luminescens]
Length = 192
Score = 48.1 bits (113), Expect = 2e-04
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 38/203 (18%)
Query: 207 RFQKRWSQTPRVPQTSVLGHTLCVALMGYLL-SFDLKACKSMRINHFLG-GLFHDLPEIL 264
R KRWS V SVL H+ V L+ YL + ++ KS+ + L HD E+L
Sbjct: 16 RLIKRWSLMHSVQPESVLEHSAVVTLLSYLAGNIAIQQGKSVDLATMLAHACLHDAAEVL 75
Query: 265 TRDIITPIKQSVAGLDHCIKEIEKKEMQNKVYSFVSLGVQEDLKYFTENEFKNRYKDKSN 324
D++TP+K++ A L + EF+ K +
Sbjct: 76 CSDVVTPVKKANAVL--------------------------------QREFERLEKAAED 103
Query: 325 KIIFTKDAEELFTLYNSDEYLGVCGELLKVCDHLSAFLEAQISLS--HGISSNDLIKGAQ 382
K+I T AE + + G L+K CD SA+++ ++ ++ +GI D + +
Sbjct: 104 KLIQTLPAELQDAVAIAFAPGGYEQSLVKACDTYSAYIKCKLKVATGNGIEFQDALSKME 163
Query: 383 NLL-ELRSQTELLDLDLGKLFRD 404
++ +++S +D L K F D
Sbjct: 164 RVVAQVKSDFPEIDA-LDKWFGD 185
>ref|NP_406090.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC91361.1| (AJ414152) conserved hypothetical protein [Yersinia pestis]
Length = 197
Score = 43.5 bits (101), Expect = 0.004
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 205 QLRFQKRWSQTPRVPQTSVLGHTLCVALMGYLLSFDLKACKSMRINHFLGG-------LF 257
+L+ RW V +V H+L VA + + L+ K+ + N L ++
Sbjct: 10 RLKLINRWPLMRNVRTENVSEHSLQVAFVAHALAI----IKNRKFNGNLNAERIALLAMY 65
Query: 258 HDLPEILTRDIITPIKQSVAGLDHCIKEIEKKEMQNKVYSFVSLGVQEDLKYFTENEFKN 317
HD E++T D+ TPIK + H K+IE K Q K+ + +Q D + + +
Sbjct: 66 HDASEVITGDLPTPIKYHNPKIAHEYKKIE-KVAQQKLIEMLPKELQHDFRCLLDEHY-- 122
Query: 318 RYKDKSNKIIFTKDA 332
Y ++ ++ DA
Sbjct: 123 -YSEEEKALVKQADA 136
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.323 0.140 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,493,145
Number of Sequences: 1026957
Number of extensions: 10462885
Number of successful extensions: 29043
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29033
Number of HSP's gapped (non-prelim): 7
length of query: 406
length of database: 324,149,939
effective HSP length: 123
effective length of query: 283
effective length of database: 197,834,228
effective search space: 55987086524
effective search space used: 55987086524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 98 (42.4 bits)