BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645335|ref|NP_207506.1| hypothetical protein
[Helicobacter pylori 26695]
(124 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207506.1| (NC_000915) hypothetical protein [Helicoba... 253 3e-67
ref|NP_223369.1| (NC_000921) putative [Helicobacter pylori ... 231 8e-61
gb|AAG21350.1|AF275307_6 (AF275307) unknown [Helicobacter p... 113 4e-25
gb|AAM22670.1|AF469113_10 (AF469113) unknown [Helicobacter ... 107 3e-23
gb|AAM22658.1|AF469112_13 (AF469112) unknown [Helicobacter ... 106 4e-23
ref|NP_569165.1| (NC_003383) similar to unknown protein [Li... 78 2e-14
ref|NP_617051.1| (NC_003552) conserved hypothetical protein... 45 1e-04
ref|NP_634630.1| (NC_003901) hypothetical protein [Methanos... 42 0.001
>ref|NP_207506.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64608 hypothetical protein HP0712 - Helicobacter pylori (strain 26695)
gb|AAD07770.1| (AE000584) H. pylori predicted coding region HP0712 [Helicobacter
pylori 26695]
Length = 124
Score = 253 bits (646), Expect = 3e-67
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAETISILTTEYIPREMPQRAFFEVKN 60
MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAETISILTTEYIPREMPQRAFFEVKN
Sbjct: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAETISILTTEYIPREMPQRAFFEVKN 60
Query: 61 YQNMLFFLLENLNKGQSVDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFETTPIFK 120
YQNMLFFLLENLNKGQSVDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFETTPIFK
Sbjct: 61 YQNMLFFLLENLNKGQSVDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFETTPIFK 120
Query: 121 CLWL 124
CLWL
Sbjct: 121 CLWL 124
>ref|NP_223369.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71905 hypothetical protein jhp0651 - Helicobacter pylori (strain J99)
gb|AAD06227.1| (AE001497) putative [Helicobacter pylori J99]
Length = 234
Score = 231 bits (590), Expect = 8e-61
Identities = 115/120 (95%), Positives = 117/120 (96%)
Query: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAETISILTTEYIPREMPQRAFFEVKN 60
MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAE ISILTTEYIPREMPQRAFFEVKN
Sbjct: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAEIISILTTEYIPREMPQRAFFEVKN 60
Query: 61 YQNMLFFLLENLNKGQSVDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFETTPIFK 120
YQNMLFFLLENLNK QS+DSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFETTP F+
Sbjct: 61 YQNMLFFLLENLNKRQSMDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFETTPHFQ 120
>gb|AAG21350.1|AF275307_6 (AF275307) unknown [Helicobacter pylori]
Length = 135
Score = 113 bits (282), Expect = 4e-25
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAETISILTTEYIP-REMPQRAFFEVK 59
MNYKELL+FNDYAMDLTIRMAHH++A+E N L+L +TISIL P + + +E++
Sbjct: 6 MNYKELLKFNDYAMDLTIRMAHHNSAMEGNSLTLGDTISILIDRKTPIKSVRLDEVYEIE 65
Query: 60 NYQNMLFFLLENLNKGQSVDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFET 115
NY+N + F+LE L + + +D I H +LM +LP+ G FK T N I+GA T
Sbjct: 66 NYRNFIPFILEFLERNRDIDEHLICHFHSVLMRNILPDFGKFKNTYNEIIGAKKPT 121
>gb|AAM22670.1|AF469113_10 (AF469113) unknown [Helicobacter pylori]
Length = 202
Score = 107 bits (266), Expect = 3e-23
Identities = 55/116 (47%), Positives = 77/116 (65%), Gaps = 1/116 (0%)
Query: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAETISILTTEYIP-REMPQRAFFEVK 59
M+YKELLEF+DYAMDLTIRMAHH++A+E N L+L +T+SIL P + + E++
Sbjct: 1 MDYKELLEFDDYAMDLTIRMAHHNSAMEGNSLTLGDTMSILIDRKTPIKSVSLDEVHEIE 60
Query: 60 NYQNMLFFLLENLNKGQSVDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFET 115
NY+N + +LE L + + +D I H +LM +LP+ G FKTT N I+GA T
Sbjct: 61 NYRNFVPLILEFLERDKIIDEHLIGHFHSVLMRNILPDFGKFKTTYNEIIGAKKPT 116
>gb|AAM22658.1|AF469112_13 (AF469112) unknown [Helicobacter pylori]
Length = 257
Score = 106 bits (265), Expect = 4e-23
Identities = 55/116 (47%), Positives = 77/116 (65%), Gaps = 1/116 (0%)
Query: 1 MNYKELLEFNDYAMDLTIRMAHHSTAIENNPLSLAETISILTTEYIP-REMPQRAFFEVK 59
M+YKELLEF+DYAMDLTIRMAHH++A+E N L+L +T+SIL P + + E++
Sbjct: 14 MDYKELLEFDDYAMDLTIRMAHHNSAMEGNNLTLGDTMSILIDRKTPIKSVSLDEVHEIE 73
Query: 60 NYQNMLFFLLENLNKGQSVDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFET 115
NY+N + +LE L + + +D I H +LM +LP+ G FKTT N I+GA T
Sbjct: 74 NYRNFVPLILEFLERDKIIDEHLIGHFHSVLMRNILPDFGKFKTTYNEIIGAKKPT 129
>ref|NP_569165.1| (NC_003383) similar to unknown protein [Listeria innocua]
emb|CAC42006.1| (AL592102) similar to unknown protein [Listeria innocua]
Length = 254
Score = 77.8 bits (190), Expect = 2e-14
Identities = 41/122 (33%), Positives = 69/122 (55%), Gaps = 7/122 (5%)
Query: 10 NDYAMDLTIRMAHHSTAIENNPLSLAETISILTTEYI--PREMPQRAFFEVKNYQNMLFF 67
N+Y D+ +R+AHHS+AIE N +SLA+T+SI+ + R +EVKN++ +
Sbjct: 9 NEYLQDVLVRLAHHSSAIEGNTISLADTVSIILHNKVTGKESYDLREIYEVKNHEQAFAY 68
Query: 68 LLENLNKGQSVDSFFIRELHGILMNFLLPNKGAFKTTDNTILGASFET-----TPIFKCL 122
++E + + + I+++H L + L + G FK + N ILGA F+T TP+
Sbjct: 69 VMEEIEALRPISVPTIKQIHAYLTDRLQYDHGEFKASANAILGADFQTASPQETPLLVQQ 128
Query: 123 WL 124
W+
Sbjct: 129 WV 130
>ref|NP_617051.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM05531.1| (AE010900) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 326
Score = 45.1 bits (105), Expect = 1e-04
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 18 IRMAH--HSTAIENNPLSLAETISILTTEYIPREMPQRAFFEVKNYQNMLFFLLENLNKG 75
+R+ H HS AIE N L+L ET +L E R E N + E K
Sbjct: 58 MRLVHTYHSNAIEGNTLTLQETKLVLEEELTIGGKSLREHLEATNNAKAFDRMGELAKKK 117
Query: 76 QSVDSFFIRELHGILMNFLLPNKGAFKTTDNTILGA 111
+++D I+E+H I+ +L + G ++T + I GA
Sbjct: 118 RAIDHVIIQEIHEIVTRGILEDAGRYRTRNIRITGA 153
>ref|NP_634630.1| (NC_003901) hypothetical protein [Methanosarcina mazei Goe1]
gb|AAM32302.1| (AE013505) hypothetical protein [Methanosarcina mazei Goe1]
Length = 359
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 18 IRMAHHSTAIENNPLSLAETISILTTEYIPREMPQRAFFEVKNYQNMLFFLLENLNKGQS 77
I+ HH+T+IE N L+L E ++ + IP + EVKNY ++L + +++L + S
Sbjct: 58 IKQTHHTTSIEGNQLTLEEVSLLIEGKDIPAGEKDKN--EVKNYVDVLEY-IDSLEESTS 114
Query: 78 VDSFFIRELHGILMNFLLPNKGA 100
+ E+H + + +LP A
Sbjct: 115 ITEKIFLEIHRLTVKDILPAASA 137
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,055,317
Number of Sequences: 1026957
Number of extensions: 2628455
Number of successful extensions: 8515
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8504
Number of HSP's gapped (non-prelim): 8
length of query: 124
length of database: 324,149,939
effective HSP length: 100
effective length of query: 24
effective length of database: 221,454,239
effective search space: 5314901736
effective search space used: 5314901736
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 90 (39.3 bits)