BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646199|ref|NP_207507.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(114 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207507.1| (NC_000915) conserved hypothetical protein... 232 7e-61
ref|NP_223369.1| (NC_000921) putative [Helicobacter pylori ... 218 8e-57
ref|NP_569165.1| (NC_003383) similar to unknown protein [Li... 89 9e-18
gb|AAM22658.1|AF469112_13 (AF469112) unknown [Helicobacter ... 79 7e-15
gb|AAM22670.1|AF469113_10 (AF469113) unknown [Helicobacter ... 71 3e-12
gb|AAC96088.1| (AF055274) unknown [Helicobacter pylori] 66 6e-11
gb|AAC96091.1| (AF055277) unknown [Helicobacter pylori] 66 6e-11
gb|AAC96089.1| (AF055275) unknown [Helicobacter pylori] 66 8e-11
ref|NP_044346.1| (NC_001756) orf2; putative 27,629 kDa prot... 66 8e-11
gb|AAM22660.1|AF469112_15 (AF469112) unknown [Helicobacter ... 65 1e-10
ref|NP_052247.1| (NC_002110) unknown [Helicobacter pylori] ... 64 4e-10
gb|AAC96090.1| (AF055276) unknown [Helicobacter pylori] 62 2e-09
gb|AAG21346.1|AF275307_2 (AF275307) unknown [Helicobacter p... 61 3e-09
gb|AAF74447.1|AF238307_11 (AF238307) unknown [Bacteroides u... 55 1e-07
ref|NP_561759.1| (NC_003366) conserved hypothetical protein... 54 4e-07
ref|NP_661574.1| (NC_002932) conserved hypothetical protein... 47 4e-05
ref|NP_046426.1| (NC_001880) putative protein [Aquifex aeol... 47 4e-05
ref|NP_395972.1| (NC_003064) AGR_pAT_51p [Agrobacterium tum... 46 9e-05
ref|NP_396317.1| (NC_003064) AGR_pAT_556p [Agrobacterium tu... 46 9e-05
ref|NP_535757.1| (NC_003306) conserved hypothetical protein... 46 9e-05
ref|NP_602010.1| (NC_003450) COG3177:Uncharacterized BCR [C... 45 1e-04
dbj|BAC00213.1| (AP005283) Uncharacterized BCR [Corynebacte... 45 1e-04
ref|NP_617051.1| (NC_003552) conserved hypothetical protein... 45 2e-04
ref|NP_599368.1| (NC_003450) COG3177:Uncharacterized BCR [C... 44 3e-04
dbj|BAB97508.1| (AP005274) Uncharacterized BCR [Corynebacte... 44 3e-04
ref|NP_635608.1| (NC_003902) conserved hypothetical protein... 43 6e-04
ref|NP_104022.1| (NC_002678) hypothetical protein [Mesorhiz... 43 8e-04
ref|NP_396283.1| (NC_003064) AGR_pAT_503p [Agrobacterium tu... 43 8e-04
ref|NP_640590.1| (NC_003919) conserved hypothetical protein... 43 8e-04
ref|NP_646370.1| (NC_003923) conserved hypothetical protein... 42 0.001
ref|NP_372127.1| (NC_002758) conserved hypothetical protein... 42 0.001
gb|AAC26847.1| (AF049611) huntingtin interacting protein HY... 42 0.002
ref|NP_009007.1| (NM_007076) Huntingtin interacting protein... 42 0.002
ref|NP_603868.1| (NC_003454) Huntington interacting Protein... 41 0.003
ref|NP_635450.1| (NC_003902) conserved hypothetical protein... 41 0.003
ref|NP_274435.1| (NC_003112) conserved hypothetical protein... 41 0.003
ref|NP_284351.1| (NC_003116) hypothetical protein [Neisseri... 41 0.003
ref|NP_273506.1| (NC_003112) conserved hypothetical protein... 41 0.003
ref|NP_436394.1| (NC_003037) conserved hypothetical protein... 40 0.004
ref|NP_395839.1| (NC_002608) Vng6349c [Halobacterium sp. NR... 40 0.004
gb|AAM00873.1|AF486555_4 (AF486555) MloA [Campylobacter jej... 40 0.004
gb|AAM00840.1|AF486549_2 (AF486549) MloA [Campylobacter jej... 40 0.005
gb|AAM00837.1|AF486548_4 (AF486548) MloA [Campylobacter jej... 40 0.005
gb|EAA13788.1| (AAAB01008980) agCP8137 [Anopheles gambiae s... 40 0.005
>ref|NP_207507.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||A64609 conserved hypothetical protein HP0713 - Helicobacter pylori
(strain 26695)
Length = 114
Score = 232 bits (591), Expect = 7e-61
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MPMAIKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLE 60
MPMAIKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLE
Sbjct: 1 MPMAIKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLE 60
Query: 61 QNLIPFVITKEQKEAHIKALDTCNTESLYQLAKVSQEFELTRIQGQMILNKNKP 114
QNLIPFVITKEQKEAHIKALDTCNTESLYQLAKVSQEFELTRIQGQMILNKNKP
Sbjct: 61 QNLIPFVITKEQKEAHIKALDTCNTESLYQLAKVSQEFELTRIQGQMILNKNKP 114
>ref|NP_223369.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71905 hypothetical protein jhp0651 - Helicobacter pylori (strain J99)
gb|AAD06227.1| (AE001497) putative [Helicobacter pylori J99]
Length = 234
Score = 218 bits (556), Expect = 8e-57
Identities = 107/113 (94%), Positives = 111/113 (97%)
Query: 2 PMAIKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQ 61
PMA+KEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGR+LIFYS LEQ
Sbjct: 122 PMAMKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRILIFYSALEQ 181
Query: 62 NLIPFVITKEQKEAHIKALDTCNTESLYQLAKVSQEFELTRIQGQMILNKNKP 114
NLIPFVITKEQKEA+IKALDT NTESLYQLAKVSQEFELTRIQGQM+LNKNKP
Sbjct: 182 NLIPFVITKEQKEAYIKALDTRNTESLYQLAKVSQEFELTRIQGQMVLNKNKP 234
>ref|NP_569165.1| (NC_003383) similar to unknown protein [Listeria innocua]
emb|CAC42006.1| (AL592102) similar to unknown protein [Listeria innocua]
Length = 254
Score = 89.0 bits (219), Expect = 9e-18
Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 7/109 (6%)
Query: 2 PMAIKEWCDNLNYKMKTLQD-------KEEKLKAILEQHILFERIHPFSDGNGRVGRMLI 54
P+ +++W DN+NY++ T ++ K++KL+ ILE HI FERIHPFSDGNGR GRM++
Sbjct: 123 PLLVQQWVDNVNYRLGTHEESLEKEPSKDDKLETILESHIAFERIHPFSDGNGRTGRMVM 182
Query: 55 FYSVLEQNLIPFVITKEQKEAHIKALDTCNTESLYQLAKVSQEFELTRI 103
Y ++E + P +I E+K ++ L + + AK E R+
Sbjct: 183 NYLLMENDFPPLIIKSEEKAVYMTYLANQDVSGFHTFAKQKLAQEKERV 231
>gb|AAM22658.1|AF469112_13 (AF469112) unknown [Helicobacter pylori]
Length = 257
Score = 79.3 bits (194), Expect = 7e-15
Identities = 39/91 (42%), Positives = 55/91 (59%)
Query: 23 EEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKALDT 82
EEK+K I E HI FE IHPFSDGNGR GR L+FY ++ NL PFVI + ++ A+
Sbjct: 157 EEKIKKIAEHHIEFEEIHPFSDGNGRTGRALMFYQTIKANLTPFVIEVSARSEYMHAMRE 216
Query: 83 CNTESLYQLAKVSQEFELTRIQGQMILNKNK 113
+ +L + K Q+ EL +I+ + K +
Sbjct: 217 QDANALVGIIKNCQKIELEKIERYAAILKER 247
>gb|AAM22670.1|AF469113_10 (AF469113) unknown [Helicobacter pylori]
Length = 202
Score = 70.9 bits (172), Expect = 3e-12
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 23 EEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKAL 80
EEK+K I E HI FE IHPFSDGNGR GR L+FY ++ NL PFVI + ++ A+
Sbjct: 144 EEKIKKIAEHHIEFEEIHPFSDGNGRTGRALMFYQTIKANLTPFVIEVSARSEYMHAM 201
>gb|AAC96088.1| (AF055274) unknown [Helicobacter pylori]
Length = 223
Score = 66.2 bits (160), Expect = 6e-11
Identities = 32/81 (39%), Positives = 52/81 (63%), Gaps = 6/81 (7%)
Query: 2 PMAIKEWCDNL--NYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVL 59
P ++ NL NY+ ++ E L+ I++ H+ FE+IHPFSDGNGRVGR+++F L
Sbjct: 121 PQLVESELTNLVKNYQ----RNLEVSLENIIDFHVAFEKIHPFSDGNGRVGRLVMFKECL 176
Query: 60 EQNLIPFVITKEQKEAHIKAL 80
+ N++PF+I E K + + +
Sbjct: 177 KNNIMPFIIENEHKAFYYRGI 197
>gb|AAC96091.1| (AF055277) unknown [Helicobacter pylori]
Length = 199
Score = 66.2 bits (160), Expect = 6e-11
Identities = 32/81 (39%), Positives = 52/81 (63%), Gaps = 6/81 (7%)
Query: 2 PMAIKEWCDNL--NYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVL 59
P ++ NL NY+ ++ E L+ I++ H+ FE+IHPFSDGNGRVGR+++F L
Sbjct: 121 PQLVESELTNLVKNYQ----RNLEVSLENIIDFHVAFEKIHPFSDGNGRVGRLVMFKECL 176
Query: 60 EQNLIPFVITKEQKEAHIKAL 80
+ N++PF+I E K + + +
Sbjct: 177 KNNIMPFIIENEHKAFYYRGI 197
>gb|AAC96089.1| (AF055275) unknown [Helicobacter pylori]
Length = 205
Score = 65.9 bits (159), Expect = 8e-11
Identities = 27/58 (46%), Positives = 42/58 (71%)
Query: 23 EEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKAL 80
E L+ I++ H+ FE+IHPFSDGNGRVGR+++F L+ N++PF+I E K + + +
Sbjct: 140 EVSLENIIDFHVAFEKIHPFSDGNGRVGRLVMFKECLKNNIMPFIIENEHKAFYYRGI 197
>ref|NP_044346.1| (NC_001756) orf2; putative 27,629 kDa protein [Helicobacter pylori]
pir||T45067 hypothetical protein [imported] - Helicobacter pylori plasmid
pHPM180
gb|AAA20889.1| (U12689) orf2; putative 27,629 kDa protein [Helicobacter pylori]
Length = 236
Score = 65.9 bits (159), Expect = 8e-11
Identities = 27/58 (46%), Positives = 42/58 (71%)
Query: 23 EEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKAL 80
E L+ I++ H+ FE+IHPFSDGNGRVGR+++F L+ N++PF+I E K + + +
Sbjct: 148 EVSLENIIDFHVAFEKIHPFSDGNGRVGRLVMFKECLKNNIMPFIIENEHKAFYYRGI 205
>gb|AAM22660.1|AF469112_15 (AF469112) unknown [Helicobacter pylori]
Length = 235
Score = 65.1 bits (157), Expect = 1e-10
Identities = 32/81 (39%), Positives = 52/81 (63%), Gaps = 6/81 (7%)
Query: 2 PMAIKEWCDNL--NYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVL 59
P ++ NL NY+ ++ E L+ I++ H+ FE+IHPFSDGNGRVGR+++F L
Sbjct: 128 PQLVESELTNLVKNYQ----RNLEVSLENIIDFHVDFEKIHPFSDGNGRVGRLVMFKECL 183
Query: 60 EQNLIPFVITKEQKEAHIKAL 80
+ N++PF+I E K + + +
Sbjct: 184 KNNIMPFIIENEHKAFYYRGI 204
>ref|NP_052247.1| (NC_002110) unknown [Helicobacter pylori]
gb|AAC13496.1| (AF056496) unknown [Helicobacter pylori]
Length = 252
Score = 63.5 bits (153), Expect = 4e-10
Identities = 30/79 (37%), Positives = 49/79 (61%), Gaps = 2/79 (2%)
Query: 2 PMAIKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQ 61
P +++ NL + +L L+ I++ H+ FE+IHPFSDGNGRVGR+++F L
Sbjct: 145 PQLVEKELTNLLQRYHSLT--ATSLENIIDFHVDFEKIHPFSDGNGRVGRLVMFKECLRN 202
Query: 62 NLIPFVITKEQKEAHIKAL 80
N++PF+I E K + + +
Sbjct: 203 NIMPFIIENEHKAFYYRGI 221
>gb|AAC96090.1| (AF055276) unknown [Helicobacter pylori]
Length = 170
Score = 61.6 bits (148), Expect = 2e-09
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Query: 2 PMAIKEWCDNL--NYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVL 59
P ++ NL NY+ ++ E L+ I++ H+ F++IH FSDGNGRVGR+++F L
Sbjct: 67 PQLVESELTNLVKNYQ----RNLEVSLENIIDFHVAFQKIHHFSDGNGRVGRLVMFKECL 122
Query: 60 EQNLIPFVITKEQKEAHIKAL 80
+ N++PF+I E K + + +
Sbjct: 123 KNNIMPFIIENEHKAFYYRGI 143
>gb|AAG21346.1|AF275307_2 (AF275307) unknown [Helicobacter pylori]
Length = 234
Score = 60.8 bits (146), Expect = 3e-09
Identities = 25/55 (45%), Positives = 40/55 (72%)
Query: 26 LKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKAL 80
L+ I++ H+ FE+IHPFSDGNGRVGR+++F L+ N++ F+I E K + + +
Sbjct: 150 LENIIDFHVAFEKIHPFSDGNGRVGRLVMFKECLKNNIMLFIIENEHKAFYYRGI 204
>gb|AAF74447.1|AF238307_11 (AF238307) unknown [Bacteroides uniformis]
Length = 269
Score = 55.1 bits (131), Expect = 1e-07
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 1 MPMAIKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLE 60
+P + E C L K K + E+ + H+ IHP+ DGNGR R+L+ Y
Sbjct: 147 VPAKVDELCAILQEKQKKMGTLREQYELSFNAHLNLVTIHPWVDGNGRTARLLMNYIQFC 206
Query: 61 QNLIPFVITKEQKEAHIKALDTCNTESLYQ 90
+L P I KE +E +I +L C E Q
Sbjct: 207 YHLFPTKIFKEDREEYILSLRQCQNEETNQ 236
>ref|NP_561759.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80549.1| (AP003188) conserved hypothetical protein [Clostridium perfringens]
Length = 137
Score = 53.5 bits (127), Expect = 4e-07
Identities = 29/83 (34%), Positives = 44/83 (52%), Gaps = 1/83 (1%)
Query: 10 DNLNYKMKTLQD-KEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVI 68
D LN + + KE L+ I + H++FERIHPF DGNGR+GR + +L+ L +
Sbjct: 37 DKLNVLINRFNNLKEATLEEIAKFHLVFERIHPFQDGNGRIGRFIFLKQLLDNRLPLKYM 96
Query: 69 TKEQKEAHIKALDTCNTESLYQL 91
E + KAL +++ L
Sbjct: 97 NGESSTEYKKALGESTNDNVRPL 119
>ref|NP_661574.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM71916.1| (AE012840) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 342
Score = 47.0 bits (110), Expect = 4e-05
Identities = 28/67 (41%), Positives = 39/67 (57%), Gaps = 7/67 (10%)
Query: 26 LKAILEQHILFERIHPFSDGNGRVGRMLIFY-----SVLEQNLIPF-VITKEQKEAHIKA 79
LKA L H+ FE IHPF DGNGR+GR+LI + +L + L+ + K +E + +
Sbjct: 158 LKAALA-HVQFETIHPFLDGNGRIGRLLIAFILHHDGILSRPLLYLSLYFKRHRETYYRL 216
Query: 80 LDTCNTE 86
LD TE
Sbjct: 217 LDRVRTE 223
>ref|NP_046426.1| (NC_001880) putative protein [Aquifex aeolicus]
sp|O66426|YZ38_AQUAE Hypothetical protein AA38
gb|AAC07978.1| (AE000667) putative protein [Aquifex aeolicus]
Length = 320
Score = 47.0 bits (110), Expect = 4e-05
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKALDTCNTESLYQLA 92
H LFE IHPF DGNGRVGR+L+ ++E L+ + +E +I AL ++ +
Sbjct: 145 HTLFEVIHPFPDGNGRVGRILLNAILVENGLLN--VAFRNREKYISALREAEEGAIVVVE 202
Query: 93 KVSQ 96
K+S+
Sbjct: 203 KLSR 206
>ref|NP_395972.1| (NC_003064) AGR_pAT_51p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_535415.1| (NC_003306) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (Dupont)] [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK90413.1| (AE007876) AGR_pAT_51p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL45731.1| (AE008929) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 393
Score = 45.8 bits (107), Expect = 9e-05
Identities = 21/57 (36%), Positives = 35/57 (60%), Gaps = 3/57 (5%)
Query: 1 MPMAIKEWCDNLNYKMKTLQDKEEKLKAILEQ---HILFERIHPFSDGNGRVGRMLI 54
+P + E L+ + + D + +L A+++ H+ FE IHPF DGNGR+GR+L+
Sbjct: 176 VPPPVTEMAGCLDAFERFMHDDQSRLPALIKAGLLHVQFETIHPFLDGNGRIGRLLV 232
>ref|NP_396317.1| (NC_003064) AGR_pAT_556p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK90758.1| (AE007907) AGR_pAT_556p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 393
Score = 45.8 bits (107), Expect = 9e-05
Identities = 21/57 (36%), Positives = 35/57 (60%), Gaps = 3/57 (5%)
Query: 1 MPMAIKEWCDNLNYKMKTLQDKEEKLKAILEQ---HILFERIHPFSDGNGRVGRMLI 54
+P + E L+ + + D + +L A+++ H+ FE IHPF DGNGR+GR+L+
Sbjct: 176 VPPPVTEMAGCLDAFERFMHDDQSRLPALIKAGLLHVQFETIHPFLDGNGRIGRLLV 232
>ref|NP_535757.1| (NC_003306) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (Dupont)] [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL46073.1| (AE008960) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 322
Score = 45.8 bits (107), Expect = 9e-05
Identities = 21/57 (36%), Positives = 35/57 (60%), Gaps = 3/57 (5%)
Query: 1 MPMAIKEWCDNLNYKMKTLQDKEEKLKAILEQ---HILFERIHPFSDGNGRVGRMLI 54
+P + E L+ + + D + +L A+++ H+ FE IHPF DGNGR+GR+L+
Sbjct: 105 VPPPVTEMAGCLDAFERFMHDDQSRLPALIKAGLLHVQFETIHPFLDGNGRIGRLLV 161
>ref|NP_602010.1| (NC_003450) COG3177:Uncharacterized BCR [Corynebacterium
glutamicum]
Length = 454
Score = 45.4 bits (106), Expect = 1e-04
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 19 LQDKE----EKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKE 74
L+ KE EK+ H F IHPF+DGNGRV R L + + +P VI ++Q+
Sbjct: 194 LESKEFLAAEKVIQAAYAHYAFVCIHPFADGNGRVARALASVFLYKDPGVPLVIYQDQRR 253
Query: 75 AHIKALDTCN 84
+I AL+ +
Sbjct: 254 DYIHALEAAD 263
>dbj|BAC00213.1| (AP005283) Uncharacterized BCR [Corynebacterium glutamicum ATCC
13032]
Length = 361
Score = 45.4 bits (106), Expect = 1e-04
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 19 LQDKE----EKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKE 74
L+ KE EK+ H F IHPF+DGNGRV R L + + +P VI ++Q+
Sbjct: 101 LESKEFLAAEKVIQAAYAHYAFVCIHPFADGNGRVARALASVFLYKDPGVPLVIYQDQRR 160
Query: 75 AHIKALDTCN 84
+I AL+ +
Sbjct: 161 DYIHALEAAD 170
>ref|NP_617051.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM05531.1| (AE010900) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 326
Score = 44.7 bits (104), Expect = 2e-04
Identities = 24/76 (31%), Positives = 39/76 (50%)
Query: 17 KTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAH 76
K + K+ ++ H F IHPFSDGNGR R+L ++ ++ P V+ KE +
Sbjct: 173 KIAESKKHPIETASFLHHRFVEIHPFSDGNGRAARLLTNLYLIARDYPPVVLKKEDWGKY 232
Query: 77 IKALDTCNTESLYQLA 92
K+L ++ +L A
Sbjct: 233 YKSLRAADSGNLEPFA 248
>ref|NP_599368.1| (NC_003450) COG3177:Uncharacterized BCR [Corynebacterium
glutamicum]
Length = 254
Score = 43.9 bits (102), Expect = 3e-04
Identities = 18/34 (52%), Positives = 23/34 (66%)
Query: 21 DKEEKLKAILEQHILFERIHPFSDGNGRVGRMLI 54
++E L I+ H +FE IHPF DGNGR GR L+
Sbjct: 55 EEESNLVGIMMSHFMFESIHPFYDGNGRTGRYLL 88
>dbj|BAB97508.1| (AP005274) Uncharacterized BCR [Corynebacterium glutamicum ATCC
13032]
Length = 317
Score = 43.9 bits (102), Expect = 3e-04
Identities = 18/34 (52%), Positives = 23/34 (66%)
Query: 21 DKEEKLKAILEQHILFERIHPFSDGNGRVGRMLI 54
++E L I+ H +FE IHPF DGNGR GR L+
Sbjct: 118 EEESNLVGIMMSHFMFESIHPFYDGNGRTGRYLL 151
>ref|NP_635608.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM39532.1| (AE012117) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 387
Score = 43.1 bits (100), Expect = 6e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLI 64
H FE IHPF+DGNGR GR+L ++EQ L+
Sbjct: 197 HYQFEAIHPFTDGNGRTGRVLNLLMLIEQGLL 228
>ref|NP_104022.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB49808.1| (AP003000) hypothetical protein [Mesorhizobium loti]
Length = 263
Score = 42.7 bits (99), Expect = 8e-04
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1 MPMAIKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLE 60
+P ++ +C L T Q E + +++ IHPF+DGNGR R+L+ +
Sbjct: 142 VPALMERFCQWLGTARNTPQTAFEAHRRLVD-------IHPFNDGNGRTARLLMNLVLAR 194
Query: 61 QNLIPFVITKEQKEAHIKALDT 82
P I E + A+I AL+T
Sbjct: 195 AGYPPVAIRPEDRPAYIAALET 216
>ref|NP_396283.1| (NC_003064) AGR_pAT_503p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_535722.1| (NC_003306) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (Dupont)] [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK90724.1| (AE007904) AGR_pAT_503p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL46038.1| (AE008956) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 368
Score = 42.7 bits (99), Expect = 8e-04
Identities = 27/62 (43%), Positives = 33/62 (52%), Gaps = 14/62 (22%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNL-------IPFVITKEQK------EAHIKA 79
H+ FE IHPF DGNGR+GR L S L QN+ + F I K +K E H +
Sbjct: 199 HLYFESIHPFEDGNGRIGRALAEKS-LAQNIGQPSLISLAFTIEKSRKAYYSELERHQRT 257
Query: 80 LD 81
LD
Sbjct: 258 LD 259
>ref|NP_640590.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM35126.1| (AE011648) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 389
Score = 42.7 bits (99), Expect = 8e-04
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 33 HILFERIHPFSDGNGRVGRMLI 54
H+ FE IHPFSDGNGR+GR+LI
Sbjct: 211 HVQFETIHPFSDGNGRLGRLLI 232
>ref|NP_646370.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB95418.1| (AP004827) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 406
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 29 ILEQHILFERIHPFSDGNGRVGRMLI 54
I+ H LFE IHPF DGNGRVGR +I
Sbjct: 225 IMASHYLFEYIHPFYDGNGRVGRFII 250
>ref|NP_372127.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374716.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42695.1| (AP003134) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57765.1| (AP003362) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 406
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 29 ILEQHILFERIHPFSDGNGRVGRMLI 54
I+ H LFE IHPF DGNGRVGR +I
Sbjct: 225 IMASHYLFEYIHPFYDGNGRVGRFII 250
>gb|AAC26847.1| (AF049611) huntingtin interacting protein HYPE [Homo sapiens]
Length = 184
Score = 41.6 bits (96), Expect = 0.002
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKALDTCN 84
H IHPF DGNGR R+L+ +++ P I KEQ+ + L+ N
Sbjct: 82 HYKLVYIHPFIDGNGRTSRLLMNLILMQAGYPPITIRKEQRSDYYHVLEAAN 133
>ref|NP_009007.1| (NM_007076) Huntingtin interacting protein E; huntingtin interactor
protein E [Homo sapiens]
gb|AAH01342.1|AAH01342 (BC001342) Unknown (protein for MGC:5623) [Homo sapiens]
Length = 449
Score = 41.6 bits (96), Expect = 0.002
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKALDTCN 84
H IHPF DGNGR R+L+ +++ P I KEQ+ + L+ N
Sbjct: 347 HYKLVYIHPFIDGNGRTSRLLMNLILMQAGYPPITIRKEQRSDYYHVLEAAN 398
>ref|NP_603868.1| (NC_003454) Huntington interacting Protein HYPE [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95167.1| (AE010604) hypothetical cytosolic protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 330
Score = 40.8 bits (94), Expect = 0.003
Identities = 36/121 (29%), Positives = 57/121 (46%), Gaps = 12/121 (9%)
Query: 1 MPMAIKEWCDNLNYKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRM---LI--- 54
+P I E +NL +K KE L H FE IHPF DGNGR+GR+ LI
Sbjct: 143 LPEYIPELINNLFLWLKN--SKEHPLIKAAVFHYEFEFIHPFQDGNGRIGRLWHSLILSK 200
Query: 55 FYSVLEQNLIPFVITKEQKEAHIKA----LDTCNTESLYQLAKVSQEFELTRIQGQMILN 110
+ + I ++ K QKE +I D +TE + + ++ E + ++ + + +
Sbjct: 201 WKKIFAWLPIESLVQKYQKEYYISINNSNRDGESTEFILFMLRIINETLIELVENKKMTD 260
Query: 111 K 111
K
Sbjct: 261 K 261
>ref|NP_635450.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM39374.1| (AE012099) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 382
Score = 40.8 bits (94), Expect = 0.003
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLIP 65
H FE IHPF DGNGR+GR+LI + L+P
Sbjct: 209 HAQFETIHPFLDGNGRIGRLLIAALLEHWQLLP 241
>ref|NP_274435.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||A81086 conserved hypothetical protein NMB1423 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41784.1| (AE002491) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 375
Score = 40.8 bits (94), Expect = 0.003
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVI 68
H FE IHPF+DGNGR GR+L ++E+ L+ I
Sbjct: 190 HYQFEAIHPFTDGNGRTGRILNSLLLIEKGLLDLPI 225
>ref|NP_284351.1| (NC_003116) hypothetical protein [Neisseria meningitidis Z2491]
pir||G81857 hypothetical protein NMA1635 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84863.1| (AL162756) hypothetical protein [Neisseria meningitidis Z2491]
Length = 375
Score = 40.8 bits (94), Expect = 0.003
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVI 68
H FE IHPF+DGNGR GR+L ++E+ L+ I
Sbjct: 190 HYQFEAIHPFTDGNGRTGRILNSLLLIEKGLLDLPI 225
>ref|NP_273506.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||D81196 conserved hypothetical protein NMB0459 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF40896.1| (AE002402) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 369
Score = 40.8 bits (94), Expect = 0.003
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVI 68
H FE IHPF+DGNGR GR+L ++E+ L+ I
Sbjct: 190 HYQFEAIHPFTDGNGRTGRILNSLLLIEKGLLDLPI 225
>ref|NP_436394.1| (NC_003037) conserved hypothetical protein [Sinorhizobium meliloti]
gb|AAK65806.1| (AE007300) conserved hypothetical protein [Sinorhizobium meliloti]
Length = 406
Score = 40.4 bits (93), Expect = 0.004
Identities = 16/22 (72%), Positives = 19/22 (85%)
Query: 33 HILFERIHPFSDGNGRVGRMLI 54
H+ FE IHPF DGNGR+GR+LI
Sbjct: 224 HVQFETIHPFLDGNGRLGRLLI 245
>ref|NP_395839.1| (NC_002608) Vng6349c [Halobacterium sp. NRC-1]
gb|AAG20974.1| (AE005164) Vng6349c [Halobacterium sp. NRC-1]
Length = 424
Score = 40.4 bits (93), Expect = 0.004
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLI 64
H FE IHP+ DGNGR+GR+LI + + +L+
Sbjct: 249 HYQFETIHPYGDGNGRLGRLLITLQLYDADLL 280
>gb|AAM00873.1|AF486555_4 (AF486555) MloA [Campylobacter jejuni]
Length = 356
Score = 40.4 bits (93), Expect = 0.004
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 2 PMAIKEWCDNLN-YKMKTLQDKEEKLKAILEQHILFERIHPFSDGNGRVGRMLIFYSVLE 60
P I+E NL Y D+ + L + H FE IHPF DGNGR GR++ ++
Sbjct: 151 PNDIQELMGNLELYINDDSLDEFDFLVKMAIIHYQFESIHPFYDGNGRTGRIINILYLVY 210
Query: 61 QNLIPFVITKEQKEAHIKALDTCNTESLYQ-LAKVSQEFELTR 102
+ L+ F I ++ A N + Y+ L KV E ++ +
Sbjct: 211 KGLLDFPI------LYLSAYIVKNKDEYYKLLQKVRDEGDILK 247
>gb|AAM00840.1|AF486549_2 (AF486549) MloA [Campylobacter jejuni]
Length = 356
Score = 40.0 bits (92), Expect = 0.005
Identities = 24/71 (33%), Positives = 37/71 (51%), Gaps = 7/71 (9%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKALDTCNTESLYQ-L 91
H FE IHPF DGNGR GR++ ++ + L+ F I ++ A N + Y+ L
Sbjct: 183 HYQFESIHPFYDGNGRTGRIINILYLVYKGLLDFPI------LYLSAYIVKNKDEYYKLL 236
Query: 92 AKVSQEFELTR 102
KV E ++ +
Sbjct: 237 QKVRDEGDILK 247
>gb|AAM00837.1|AF486548_4 (AF486548) MloA [Campylobacter jejuni]
Length = 356
Score = 40.0 bits (92), Expect = 0.005
Identities = 24/71 (33%), Positives = 37/71 (51%), Gaps = 7/71 (9%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKALDTCNTESLYQ-L 91
H FE IHPF DGNGR GR++ ++ + L+ F I ++ A N + Y+ L
Sbjct: 183 HYQFESIHPFYDGNGRTGRIINILYLVYKGLLDFPI------LYLSAYIVKNKDEYYKLL 236
Query: 92 AKVSQEFELTR 102
KV E ++ +
Sbjct: 237 QKVRDEGDILK 247
>gb|EAA13788.1| (AAAB01008980) agCP8137 [Anopheles gambiae str. PEST]
Length = 567
Score = 40.0 bits (92), Expect = 0.005
Identities = 18/52 (34%), Positives = 26/52 (49%)
Query: 33 HILFERIHPFSDGNGRVGRMLIFYSVLEQNLIPFVITKEQKEAHIKALDTCN 84
H IHPFSDGNGR R+L+ ++ P +I K+ + + L N
Sbjct: 446 HYKLVHIHPFSDGNGRTSRLLMNTLLMRAGYPPVIIQKQHRHKYYNFLQLAN 497
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,752,906
Number of Sequences: 1026957
Number of extensions: 2343378
Number of successful extensions: 7491
Number of sequences better than 1.0e-02: 44
Number of HSP's better than 0.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7445
Number of HSP's gapped (non-prelim): 46
length of query: 114
length of database: 324,149,939
effective HSP length: 90
effective length of query: 24
effective length of database: 231,723,809
effective search space: 5561371416
effective search space used: 5561371416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)